메뉴 건너뛰기




Volumn 132, Issue 15, 2010, Pages

Fluctuations in gene regulatory networks as Gaussian colored noise

Author keywords

[No Author keywords available]

Indexed keywords

COLORED NOISE; FINITE CORRELATION TIME; GAUSSIANS; GENE REGULATORY NETWORKS; ITO INTEGRAL; LANGEVIN EQUATION; MOLECULAR COMPONENTS; MOLECULAR CONCENTRATION; REGULATORY NETWORK; STABLE EQUILIBRIUM; TOGGLE SWITCH;

EID: 77951669406     PISSN: 00219606     EISSN: None     Source Type: Journal    
DOI: 10.1063/1.3385468     Document Type: Article
Times cited : (19)

References (33)
  • 4
    • 0034688174 scopus 로고    scopus 로고
    • Construction of a genetic toggle switch in Escherichia coli
    • DOI 10.1038/35002131
    • T. S. Gardner, C. R. Cantor, and J. J. Collins, Nature (London) NATUAS 0028-0836 403, 339 (2000). 10.1038/35002131 (Pubitemid 30062394)
    • (2000) Nature , vol.403 , Issue.6767 , pp. 339-342
    • Gardner, T.S.1    Cantor, C.R.2    Collins, J.J.3
  • 5
    • 0034688173 scopus 로고    scopus 로고
    • A synthetic oscillatory network of transcriptional regulators
    • DOI 10.1038/35002125
    • M. B. Elowitz and S. Leibler, Nature (London) NATUAS 0028-0836 403, 335 (2000). 10.1038/35002125 (Pubitemid 30062393)
    • (2000) Nature , vol.403 , Issue.6767 , pp. 335-338
    • Elowitz, M.B.1    Leibier, S.2
  • 6
    • 0038241770 scopus 로고    scopus 로고
    • Development of genetic circuitry exhibiting toggle switch or oscillatory behavior in Escherichia coli
    • DOI 10.1016/S0092-8674(03)00346-5
    • M. R. Atkinson, M. A. Savageau, J. T. Myers, and A. J. Ninfa, Cell CELLB5 0092-8674 113, 597 (2003). 10.1016/S0092-8674(03)00346-5 (Pubitemid 36694185)
    • (2003) Cell , vol.113 , Issue.5 , pp. 597-607
    • Atkinson, M.R.1    Savageau, M.A.2    Myers, J.T.3    Ninfa, A.J.4
  • 7
    • 0037078982 scopus 로고    scopus 로고
    • Control, exploitation and tolerance of intracellular noise
    • DOI 10.1038/nature01258
    • C. V. Rao, D. M. Wolf, and A. P. Arkin, Nature (London) NATUAS 0028-0836 420, 231 (2002). 10.1038/nature01258 (Pubitemid 35340135)
    • (2002) Nature , vol.420 , Issue.6912 , pp. 231-237
    • Rao, C.V.1    Wolf, D.M.2    Arkin, A.P.3
  • 8
    • 38349185928 scopus 로고    scopus 로고
    • SCIEAS 0036-8075, 10.1126/science.1144331
    • J. M. Pedraza and J. Paulsson, Science SCIEAS 0036-8075 319, 339 (2008). 10.1126/science.1144331
    • (2008) Science , vol.319 , pp. 339
    • Pedraza, J.M.1    Paulsson, J.2
  • 9
    • 0034212551 scopus 로고    scopus 로고
    • Engineering stability in gene networks by autoregulation
    • DOI 10.1038/35014651
    • A. Becskei and L. Serrano, Nature (London) NATUAS 0028-0836 405, 590 (2000). 10.1038/35014651 (Pubitemid 30367734)
    • (2000) Nature , vol.405 , Issue.6786 , pp. 590-593
    • Becskel, A.1    Serrano, L.2
  • 12
    • 0034696445 scopus 로고    scopus 로고
    • How to make a biological switch
    • DOI 10.1006/jtbi.2000.1068
    • J. L. Cherry and F. R. Adler, J. Theor. Biol. JTBIAP 0022-5193 203, 117 (2000). 10.1006/jtbi.2000.1068 (Pubitemid 30662944)
    • (2000) Journal of Theoretical Biology , vol.203 , Issue.2 , pp. 117-133
    • Cherry, J.L.1    Adler, F.R.2
  • 13
    • 2342464752 scopus 로고    scopus 로고
    • PRLTAO 0031-9007 10.1103/PhysRevLett.92.128101
    • P. B. Warren and P. R. ten Wolde, Phys. Rev. Lett. PRLTAO 0031-9007 92, 128101 (2004) 10.1103/PhysRevLett.92.128101;
    • (2004) Phys. Rev. Lett. , vol.92 , pp. 128101
    • Warren, P.B.1    Ten Wolde, P.R.2
  • 14
    • 17444408518 scopus 로고    scopus 로고
    • Chemical models of genetic toggle switches
    • DOI 10.1021/jp045523y
    • P. B. Warren and P. R. ten Wolde, J. Phys. Chem. B JPCBFK 1089-5647 109, 6812 (2005). 10.1021/jp045523y (Pubitemid 40538450)
    • (2005) Journal of Physical Chemistry B , vol.109 , Issue.14 , pp. 6812-6823
    • Warren, P.B.1    Ten Wolde, P.R.2
  • 17
    • 33645429016 scopus 로고
    • JCPSA6 0021-9606, 10.1021/j100540a008
    • D. T. Gillespie, J. Chem. Phys. JCPSA6 0021-9606 81, 2340 (1977). 10.1021/j100540a008
    • (1977) J. Chem. Phys. , vol.81 , pp. 2340
    • Gillespie, D.T.1
  • 20
    • 2942657194 scopus 로고    scopus 로고
    • Intrinsic and external noise in an auto-regulatory genetic network
    • DOI 10.1016/j.jtbi.2004.03.011, PII S0022519304001122
    • Y. Tao, J. Theor. Biol. JTBIAP 0022-5193 229, 147 (2004) 10.1016/j.jtbi.2004.03.011; (Pubitemid 38780936)
    • (2004) Journal of Theoretical Biology , vol.229 , Issue.2 , pp. 147-156
    • Tao, Y.1
  • 21
    • 5644239681 scopus 로고    scopus 로고
    • Intrinsic noise, gene regulation and steady-state statistics in a two-gene network
    • DOI 10.1016/j.jtbi.2004.07.012, PII S0022519304003339
    • Y. Tao, J. Theor. Biol. JTBIAP 0022-5193 231, 563 (2004) 10.1016/j.jtbi.2004.07.012 (Pubitemid 39369988)
    • (2004) Journal of Theoretical Biology , vol.231 , Issue.4 , pp. 563-568
    • Tao, Y.1
  • 22
    • 33646975343 scopus 로고    scopus 로고
    • Stochastic fluctuations in gene expression far from equilibrium: Ω expansion and linear noise approximation
    • DOI 10.1063/1.1870874, 124108
    • Y. Tao, Y. Jia, and T. G. Dewey, J. Chem. Phys. JCPSA6 0021-9606 122, 124108 (2005). 10.1063/1.1870874 (Pubitemid 40537452)
    • (2005) Journal of Chemical Physics , vol.122 , Issue.12 , pp. 1-6
    • Tao, Y.1    Jia, Y.2    Dewey, T.G.3
  • 23
    • 22244464603 scopus 로고
    • PLRAAN 1050-2947 10.1103/PhysRevA.35.4464
    • P. Jung and P. Hänggi, Phys. Rev. A PLRAAN 1050-2947 35, 4464 (1987) 10.1103/PhysRevA.35.4464;
    • (1987) Phys. Rev. A , vol.35 , pp. 4464
    • Jung, P.1    Hänggi, P.2
  • 24
    • 29444434816 scopus 로고
    • JOBPDE 0740-3224 10.1364/JOSAB.5.000979
    • P. Jung and P. Hänggi, J. Opt. Soc. Am. B JOBPDE 0740-3224 5, 979 (1988). 10.1364/JOSAB.5.000979
    • (1988) J. Opt. Soc. Am. B , vol.5 , pp. 979
    • Jung, P.1    Hänggi, P.2
  • 25
    • 43249118966 scopus 로고    scopus 로고
    • Colored extrinsic fluctuations and stochastic gene expression
    • DOI 10.1038/msb.2008.31, PII MSB200831
    • V. Shahrezaei, J. F. Ollivier, and P. S. Swain, Mol. Syst. Biol. MSBOC3 1744-4292 4, 196 (2008). 10.1038/msb.2008.31 (Pubitemid 351655226)
    • (2008) Molecular Systems Biology , vol.4 , pp. 196
    • Shahrezaei, V.1    Ollivier, J.F.2    Swain, P.S.3
  • 27
    • 36149005118 scopus 로고
    • PRVAAH 0096-8250 10.1103/PhysRev.36.823
    • G. E. Uhlenbeck and L. S. Ornstein, Phys. Rev. PRVAAH 0096-8250 36, 823 (1930) 10.1103/PhysRev.36.823;
    • (1930) Phys. Rev. , vol.36 , pp. 823
    • Uhlenbeck, G.E.1    Ornstein, L.S.2
  • 28
    • 36149027699 scopus 로고
    • RMPHAT 0034-6861 10.1103/RevModPhys.17.323
    • M. C. Wang and G. E. Uhlenbeck, Rev. Mod. Phys. RMPHAT 0034-6861 17, 323 (1945). 10.1103/RevModPhys.17.323
    • (1945) Rev. Mod. Phys. , vol.17 , pp. 323
    • Wang, M.C.1    Uhlenbeck, G.E.2
  • 30
    • 77951676949 scopus 로고    scopus 로고
    • note
    • The kmax value was set as 2 ln 2≃1.4 in Ref., this corresponds to a mean protein number 600 when Β=0 and leads to the increase in mean protein number as the Hill coefficient Β increases. Our setting, kmax =3 which is the same as that given in Ref., leads to the decrease of mean protein number as Β increases. However, different settings do not change the picture obtained in this work.
  • 31
  • 32
    • 6244306095 scopus 로고
    • PLEEE8 1063-651X, 10.1103/PhysRevE.52.3228
    • L. Cao, D. J. Wu, and S. Z. Ke, Phys. Rev. E PLEEE8 1063-651X 52, 3228 (1995). 10.1103/PhysRevE.52.3228
    • (1995) Phys. Rev. e , vol.52 , pp. 3228
    • Cao, L.1    Wu, D.J.2    Ke, S.Z.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.