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Volumn 98, Issue 1, 2010, Pages 77-83

Pseudonocardia rhizophila sp. nov., a novel actinomycete isolated from a rhizosphere soil

Author keywords

16S rRNA gene; Pseudonocardia rhizophila sp. nov.; Rhizosphere

Indexed keywords

DIAMINO ACID; GENOMIC DNA; RNA 16S;

EID: 77951666233     PISSN: 00036072     EISSN: None     Source Type: Journal    
DOI: 10.1007/s10482-010-9431-7     Document Type: Article
Times cited : (21)

References (39)
  • 1
    • 0030613453 scopus 로고    scopus 로고
    • Effects of photoperiod on growth of and denitrification by Pseudomonas chlororaphis in the root zone of Glyceria maxima, studied in a gnotobiotic microcosm
    • DOI 10.1023/A:1004212814097
    • PLE Bodelier AG Wijlhuizen CWPM Blom HJ Laanbroek 1997 Effects of photoperiod on growth of and denitrification by Pseudomonas chlororaphis in the root zone of Glyceria maxima, studied in a gnotobiotic microcosm Plant Soil 190 91 103 10.1023/A:1004212814097 1:CAS:528:DyaK2sXkvFyjtL4%3D (Pubitemid 27275193)
    • (1997) Plant and Soil , vol.190 , Issue.1 , pp. 91-103
    • Bodelier, P.L.E.1    Wijlhuizen, A.G.2    Blom, C.W.P.M.3    Laanbroek, H.J.4
  • 3
    • 0019306204 scopus 로고
    • Lipids in the classification and identification of coryneform bacteria containing peptidoglycans based on 2,4-diaminobutyric acid
    • MD Collins D Jones 1980 Lipids in the classification and identification of coryneform bacteria containing peptidoglycans based on 2,4-diaminobutyric acid J Appl Bacteriol 48 459 470 1:CAS:528:DyaL3cXltFShtbY%3D (Pubitemid 10014746)
    • (1980) Journal of Applied Bacteriology , vol.48 , Issue.3 , pp. 459-470
    • Collins, M.D.1    Jones, D.2
  • 5
    • 85055223076 scopus 로고    scopus 로고
    • G.M. Cragg D.G.I. Kingston D.J. Newman (eds) et al. Taylor & Francis Boca Raton
    • Cragg GM, Kingston DGI, Newman DJ et al (eds) (2005) Anticancer agents from natural products. Taylor & Francis, Boca Raton
    • (2005) Anticancer Agents from Natural Products
  • 7
    • 0024358339 scopus 로고
    • Fluorometric deoxyribonucleic acid-deoxyribonucleic acid hybridization in microdilution wells as an alternative to membrane filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains
    • T Ezaki Y Hashimoto E Yabuuchi 1989 Fluorometric deoxyribonucleic acid-deoxyribonucleic acid hybridization in microdilution wells as an alternative to membrane filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains Int J Syst Bacteriol 39 224 229 10.1099/00207713-39-3-224 (Pubitemid 19175038)
    • (1989) International Journal of Systematic Bacteriology , vol.39 , Issue.3 , pp. 224-229
    • Ezaki, T.1    Hashimoto, Y.2    Yabuuchi, E.3
  • 8
    • 0000461280 scopus 로고
    • Confidence limits on phylogenies: An approach using the bootstrap
    • 10.2307/2408678
    • J Felsenstein 1985 Confidence limits on phylogenies: an approach using the bootstrap Evolution 39 783 789 10.2307/2408678
    • (1985) Evolution , vol.39 , pp. 783-789
    • Felsenstein, J.1
  • 9
    • 84959747425 scopus 로고
    • Toward defining the course of evolution: Minimum change for a specific tree topology
    • 10.2307/2412116
    • WM Fitch 1971 Toward defining the course of evolution: minimum change for a specific tree topology Syst Zool 20 406 416 10.2307/2412116
    • (1971) Syst Zool , vol.20 , pp. 406-416
    • Fitch, W.M.1
  • 10
    • 0035071613 scopus 로고    scopus 로고
    • A novel thermostable xylanase from Thermomonospora sp.: Influence of additives on thermostability
    • DOI 10.1016/S0960-8524(01)00029-3, PII S0960852401000293
    • SP George A Ahmad MB Rao 2001 A novel thermostable xylanase from Thermomonospora sp.: influence of additives on thermostability Bioresour Technol 78 221 224 10.1016/S0960-8524(01)00029-3 1:CAS:528:DC%2BD3MXjt12qsLs%3D 11341679 (Pubitemid 32288813)
    • (2001) Bioresource Technology , vol.78 , Issue.3 , pp. 221-224
    • George, S.P.1    Ahmad, A.2    Rao, M.B.3
  • 11
    • 0015949126 scopus 로고
    • Nocardia coeliaca, Nocardia autotrophica, and the nocardin strain
    • 10.1099/00207713-24-1-54
    • RE Gordon DA Barnett JE Handerhan CHN Pang 1974 Nocardia coeliaca, Nocardia autotrophica, and the nocardin strain Int J Syst Bacteriol 24 54 63 10.1099/00207713-24-1-54
    • (1974) Int J Syst Bacteriol , vol.24 , pp. 54-63
    • Gordon, R.E.1    Barnett, D.A.2    Handerhan, J.E.3    Pang, C.H.N.4
  • 12
    • 0000631895 scopus 로고
    • Über die isolierte färbung der schizomyceten in schnitt- und trockenpräparaten
    • HC Gram 1884 Über die isolierte Färbung der Schizomyceten in Schnitt- und Trockenpräparaten Fortschritte der Medizin 2 185 189
    • (1884) Fortschritte der Medizin , vol.2 , pp. 185-189
    • Gram, H.C.1
  • 13
    • 0021077093 scopus 로고
    • A rapid analysis for chemical grouping of aerobic actinomycetes
    • T Hasegawa M Takizawa S Tanida 1983 A rapid analysis for chemical grouping of aerobic actinomycetes J Gen Microbiol 29 319 322 10.2323/jgam.29.319 1:CAS:528:DyaL3sXmtV2isrw%3D (Pubitemid 14176930)
    • (1983) Journal of General and Applied Microbiology , vol.29 , Issue.4 , pp. 319-322
    • Hasegawa, T.1    Takizawa, M.2    Tanida, S.3
  • 15
    • 34250956819 scopus 로고
    • Beiträge zur Morphologie und Systematic der thermophilen Actinomyceten
    • 10.1007/BF00407588
    • A Henssen 1957 Beiträge zur Morphologie und Systematic der thermophilen Actinomyceten Arch Mikrobiol 26 377 414 10.1007/BF00407588
    • (1957) Arch Mikrobiol , vol.26 , pp. 377-414
    • Henssen, A.1
  • 16
    • 0035989580 scopus 로고    scopus 로고
    • Proposal to combine the genera Actinobispora and Pseudonocardia in an emended genus Pseudonocardia, and description of Pseudonocardia zijingensis sp. nov
    • DOI 10.1099/ijs.0.01977-0
    • Y Huang L Wang Z Lu L Hong Z Liu GYA Tan M Goodfellow 2002 Proposal to combine the genera Actinobispora and Pseudonocardia in an emended genus Pseudonocardia, and description of Pseudonocardia zijingensis sp. nov Int J Syst Evol Microbiol 52 977 982 10.1099/ijs.0.01977-0 1:CAS:528:DC%2BD38XkslCru7k%3D 12054266 (Pubitemid 34591228)
    • (2002) International Journal of Systematic and Evolutionary Microbiology , vol.52 , Issue.3 , pp. 977-982
    • Huang, Y.1    Wang, L.2    Lu, Z.3    Hong, L.4    Liu, Z.5    Tan, G.Y.A.6    Goodfellow, M.7
  • 18
    • 0019296687 scopus 로고
    • A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences
    • DOI 10.1007/BF01731581
    • M Kimura 1980 A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequence J Mol Evol 16 111 120 10.1007/BF01731581 1:CAS:528:DyaL3MXmtFSktg%3D%3D 7463489 (Pubitemid 11166431)
    • (1980) Journal of Molecular Evolution , vol.16 , Issue.2 , pp. 111-120
    • Kimura, M.1
  • 19
    • 0002044672 scopus 로고
    • Chemical composition as a criterion in the classification of aerobic actinomycetes
    • 10.1099/00207713-20-4-435 1:CAS:528:DyaE3sXltFaqur0%3D
    • MP Lechevalier H Lechevalier 1970 Chemical composition as a criterion in the classification of aerobic actinomycetes Int J Syst Bacteriol 20 435 443 10.1099/00207713-20-4-435 1:CAS:528:DyaE3sXltFaqur0%3D
    • (1970) Int J Syst Bacteriol , vol.20 , pp. 435-443
    • Lechevalier, M.P.1    Lechevalier, H.2
  • 21
    • 0025644974 scopus 로고
    • Substrate flow in the rhizosphere
    • 10.1007/BF00011685 1:CAS:528:DyaK3MXotVCjtQ%3D%3D
    • JM Lynch JM Whipps 1990 Substrate flow in the rhizosphere Plant Soil 129 1 10 10.1007/BF00011685 1:CAS:528:DyaK3MXotVCjtQ%3D%3D
    • (1990) Plant Soil , vol.129 , pp. 1-10
    • Lynch, J.M.1    Whipps, J.M.2
  • 22
    • 0034891425 scopus 로고    scopus 로고
    • Natural products as immunosuppressive agents
    • DOI 10.1039/b001720p
    • J Mann 2001 Natural products as immunosuppressive agents Nat Prod Rep 18 417 430 10.1039/b001720p 1:CAS:528:DC%2BD3MXltlyqsbs%3D 11548050 (Pubitemid 32773841)
    • (2001) Natural Product Reports , vol.18 , Issue.4 , pp. 417-430
    • Mann, J.1
  • 23
    • 0042531881 scopus 로고    scopus 로고
    • Chandrananimycins A ∼ C: Production of novel anticancer antibiotics from a marine Actinomadura sp. isolate M048 by variation of medium composition and growth conditions
    • RP Maskey FC Li S Qin HH Fiebig H Latsch 2003 Chandrananimycins A∼C: production of novel anticancer antibiotics from a marine Actinomadura sp. isolate M048 by variation of medium composition and growth conditions J Antibiot 56 622 629 1:CAS:528:DC%2BD3sXlvFCguro%3D 14513905 (Pubitemid 36975220)
    • (2003) Journal of Antibiotics , vol.56 , Issue.7 , pp. 622-629
    • Maskey, R.P.1    Li, F.C.2    Qin, S.3    Fiebig, H.H.4    Laatsch, H.5
  • 24
    • 0028294264 scopus 로고
    • The phylogenetic position of Pseudoamycolata halophobica (Akimov et al. 1989) and a proposal to reclassify it as Pseudonocardia halophobica
    • HP McVeigh J Munro TM Embley 1994 The phylogenetic position of Pseudoamycolata halophobica (Akimov et al. 1989) and a proposal to reclassify it as Pseudonocardia halophobica Int J Syst Bacteriol 44 300 302 10.1099/00207713-44-2-300 1:CAS:528:DyaK2cXlsFeitbk%3D 8186094 (Pubitemid 24116299)
    • (1994) International Journal of Systematic Bacteriology , vol.44 , Issue.2 , pp. 300-302
    • McVeigh, H.P.1    Munro, J.2    Embley, T.M.3
  • 25
    • 0000198211 scopus 로고
    • Precise measurement of the G+C content of deoxyribonucleic acid by high-performance liquid chromatography
    • 10.1099/00207713-39-2-159 1:CAS:528:DyaL1MXltFWku7o%3D
    • M Mesbah U Premachandran WB Whitman 1989 Precise measurement of the G+C content of deoxyribonucleic acid by high-performance liquid chromatography Int J Syst Bacteriol 39 159 167 10.1099/00207713-39-2-159 1:CAS:528: DyaL1MXltFWku7o%3D
    • (1989) Int J Syst Bacteriol , vol.39 , pp. 159-167
    • Mesbah, M.1    Premachandran, U.2    Whitman, W.B.3
  • 26
    • 0018393563 scopus 로고
    • Fatty acid and polar lipid composition in the classification of Cellulomonas, Oerskovia and related taxa
    • DE Minnikin MD Collins M Goodfellow 1979 Fatty acid and polar lipid composition in the classification of Cellulomonas, Oerskovia and related taxa J Appl Bacteriol 47 87 95 1:CAS:528:DyaE1MXlsFCiu7w%3D (Pubitemid 9239553)
    • (1979) Journal of Applied Bacteriology , vol.47 , Issue.1 , pp. 87-95
    • Minnikin, D.E.1    Collins, M.D.2    Goodfellow, M.3
  • 27
    • 0037009182 scopus 로고    scopus 로고
    • Production and partial characterisation of xylanase from Streptomyces sp. strain AMT-3 isolated from Brazilian cerrado soil
    • DOI 10.1016/S0141-0229(02)00150-3, PII S0141022902001503
    • RP Nascimento RRR Coelho S Marques L Alves FM Girio EPS Bon MT Amaral-Collaco 2002 Production and partial characterization of xylanase from Streptomyces sp. strain AMT-3 isolated from Brazilian cerrado soil Enzyme Microb Technol 31 549 555 10.1016/S0141-0229(02)00150-3 1:CAS:528:DC%2BD38XlvVWgsb4%3D (Pubitemid 34879085)
    • (2002) Enzyme and Microbial Technology , vol.31 , Issue.4 , pp. 549-555
    • Nascimento, R.P.1    Coelho, R.R.R.2    Marques, S.3    Alves, L.4    Girio, F.M.5    Bon, E.P.S.6    Amaral-Collaco, M.T.7
  • 28
    • 55849085032 scopus 로고    scopus 로고
    • Pseudonocardia carboxydivorans sp. nov., a carbon monoxide-oxidizing actinomycete, and an emended description of the genus Pseudonocardia
    • 10.1099/ijs.0.65765-0 1:CAS:528:DC%2BD1MXjvVOitQ%3D%3D 18984679
    • SW Park ST Park JE Lee YM Kim 2008 Pseudonocardia carboxydivorans sp. nov., a carbon monoxide-oxidizing actinomycete, and an emended description of the genus Pseudonocardia Int J Syst Evol Microbiol 58 2475 2478 10.1099/ijs.0.65765-0 1:CAS:528:DC%2BD1MXjvVOitQ%3D%3D 18984679
    • (2008) Int J Syst Evol Microbiol , vol.58 , pp. 2475-2478
    • Park, S.W.1    Park, S.T.2    Lee, J.E.3    Kim, Y.M.4
  • 29
    • 0031744640 scopus 로고    scopus 로고
    • Pseudonocardia asaccharolytica sp. nov. and Pseudonocardia sulfidoxydans sp. nov., two new dimethyl disulfide-degrading actinomycetes and emended description of the genus Pseudonocardia
    • K Reichert A Lipski S Pradella E Stackebrandt K Altendorf 1998 Pseudonocardia asacccharolytica sp. nov. and Pseudonocardia sulfidoxydans sp. nov., two new dimethyl disulfide-degrading actinomycetes and emended description of the genus Pseudonocardia Int J Syst Bacteriol 48 441 449 10.1099/00207713-48-2-441 1:CAS:528:DyaK1cXkt1aitb4%3D 9731282 (Pubitemid 28272398)
    • (1998) International Journal of Systematic Bacteriology , vol.48 , Issue.2 , pp. 441-449
    • Reichert, K.1    Lipski, A.2    Pradella, S.3    Stackebrandt, E.4    Altendorf, K.5
  • 30
    • 0023375195 scopus 로고
    • The neighbor-joining method: A new method for reconstructing phylogenetic tree
    • 1:STN:280:DyaL1c7ovFSjsA%3D%3D 3447015
    • N Saitou M Nei 1987 The neighbor-joining method: a new method for reconstructing phylogenetic tree Mol Biol Evol 4 406 425 1:STN:280: DyaL1c7ovFSjsA%3D%3D 3447015
    • (1987) Mol Biol Evol , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 31
    • 0001023407 scopus 로고
    • Methods for characterization of Streptomyces species
    • 10.1099/00207713-16-3-313
    • EB Shirling D Gottlieb 1966 Methods for characterization of Streptomyces species Int J Syst Bacteriol 16 313 340 10.1099/00207713-16-3-313
    • (1966) Int J Syst Bacteriol , vol.16 , pp. 313-340
    • Shirling, E.B.1    Gottlieb, D.2
  • 32
    • 0000612080 scopus 로고
    • Phenotypic characterization
    • P. Gerhardt R.G.E. Murray W.A. Wood N.R. Krieg (eds). American Society for Microbiology Washington, DC
    • Smibert RM, Krieg NR (1994) Phenotypic characterization. In: Gerhardt P, Murray RGE, Wood WA, Krieg NR (eds) Methods for general and molecular bacteriology. American Society for Microbiology, Washington, DC, pp 607-654
    • (1994) Methods for General and Molecular Bacteriology , pp. 607-654
    • Smibert, R.M.1    Krieg, N.R.2
  • 33
    • 0028028182 scopus 로고
    • Taxonomic note: A place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology
    • E Stackebrandt BM Goebel 1994 Taxonomic note: a place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology Int J Syst Bacteriol 44 846 849 10.1099/00207713-44-4-846 1:CAS:528:DyaK2MXitFCnsb4%3D (Pubitemid 24315169)
    • (1994) International Journal of Systematic Bacteriology , vol.44 , Issue.4 , pp. 846-849
    • Stackebrandt, E.1    Goebel, B.M.2
  • 34
    • 0020638681 scopus 로고
    • Analysis of bacterial menaquinone mixtures by high performance liquid chromatography
    • J Tamaoka Y Katayama-Fujimura H Kuraishi 1983 Analysis of bacterial menaquinone mixtures by high performance liquid chromatography J Appl Bacteriol 300 31 36 (Pubitemid 13082739)
    • (1983) Journal of Applied Bacteriology , vol.54 , Issue.1 , pp. 31-36
    • Tamaoka, J.1    Katayama Fujimura, Y.2    Kuraishi, H.3
  • 35
    • 34547781750 scopus 로고    scopus 로고
    • MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0
    • DOI 10.1093/molbev/msm092
    • K Tamura J Dudley M Nei S Kumar 2007 MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0 Mol Biol Evol 24 1596 1599 10.1093/molbev/msm092 1:CAS:528:DC%2BD2sXpsVGrsL8%3D 17488738 (Pubitemid 47236692)
    • (2007) Molecular Biology and Evolution , vol.24 , Issue.8 , pp. 1596-1599
    • Tamura, K.1    Dudley, J.2    Nei, M.3    Kumar, S.4
  • 36
    • 70349314793 scopus 로고    scopus 로고
    • Zhihengliuella alba sp. nov., and emended description of the genus Zhihengliuella
    • 10.1099/ijs.0.007344-0 19567565
    • SK Tang Y Wang Y Chen K Lou LL Cao LH Xu WJ Li 2009 Zhihengliuella alba sp. nov., and emended description of the genus Zhihengliuella Int J Syst Evol Microbiol 59 2025 2032 10.1099/ijs.0.007344-0 19567565
    • (2009) Int J Syst Evol Microbiol , vol.59 , pp. 2025-2032
    • Tang, S.K.1    Wang, Y.2    Chen, Y.3    Lou, K.4    Cao, L.L.5    Xu, L.H.6    Li, W.J.7
  • 37
    • 0031574072 scopus 로고    scopus 로고
    • The CLUSTAL X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
    • DOI 10.1093/nar/25.24.4876
    • JD Thompson TJ Gibson F Plewniak F Jeanmougin DG Higgins 1997 The Clustal-X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools Nucleic Acids Res 25 4876 4882 10.1093/nar/25.24.4876 1:CAS:528:DyaK1cXntFyntQ%3D%3D 9396791 (Pubitemid 28022245)
    • (1997) Nucleic Acids Research , vol.25 , Issue.24 , pp. 4876-4882
    • Thompson, J.D.1    Gibson, T.J.2    Plewniak, F.3    Jeanmougin, F.4    Higgins, D.G.5
  • 38
    • 0002025216 scopus 로고
    • A taxonomic approach to selective isolation of streptomycetes from soil
    • L. Ortiz-Ortiz L.F. Bojalil V. Yakoleff (eds). Academic Press Orlando
    • Vickers JC, Williams ST, Ross GW (1984) A taxonomic approach to selective isolation of streptomycetes from soil. In: Ortiz-Ortiz L, Bojalil LF, Yakoleff V (eds) Biological, biochemical and biomedical aspects of actinomycetes. Academic Press, Orlando, pp 553-561
    • (1984) Biological, Biochemical and Biomedical Aspects of Actinomycetes , pp. 553-561
    • Vickers, J.C.1    Williams, S.T.2    Ross, G.W.3
  • 39
    • 0028220240 scopus 로고
    • A phylogenetic analysis of the family Pseudonocardiaceae and the genera Actinokineospora and Saccharothrix with 16S rRNA sequences and a proposal to combine the genera Amycolata and Pseudonocardia in an emended genus Pseudonocardia
    • S Warwick T Bowen HP McVeigh TM Embley 1994 A phylogenetic analysis of the family Pseudonocardiaceae and the genera Actinokineospora and Saccharothrix with 16S rRNA sequences and a proposal to combine the genera Amycolata and Pseudonocardia in an emended genus Pseudonocardia Int J Syst Bacteriol 44 293 299 10.1099/00207713-44-2-293 1:CAS:528:DyaK2cXlslCqtrg%3D 8186093 (Pubitemid 24116298)
    • (1994) International Journal of Systematic Bacteriology , vol.44 , Issue.2 , pp. 293-299
    • Warwick, S.1    Bowen, T.2    McVeigh, H.3    Embley, T.M.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.