-
1
-
-
4744344737
-
Automation of NMR structure determination of proteins
-
DOI 10.1016/j.sbi.2004.09.003, PII S0959440X04001435
-
Altieri AS, Byrd RA (2004) Automation of NMR structure determination of proteins. Curr Opin Struct Biol 14(5):547-553 (Pubitemid 39311817)
-
(2004)
Current Opinion in Structural Biology
, vol.14
, Issue.5
, pp. 547-553
-
-
Altieri, A.S.1
Byrd, R.A.2
-
2
-
-
52049125539
-
Structure-based protein NMR assignments using native structural ensembles
-
Apaydin M, Conitzer V, Donald B (2008) Structure-based protein NMR assignments using native structural ensembles. J Biomol NMR 40:263-276
-
(2008)
J Biomol NMR
, vol.40
, pp. 263-276
-
-
Apaydin, M.1
Conitzer, V.2
Donald, B.3
-
3
-
-
0033677333
-
The NOESY jigsaw: Automated protein secondary structure and main-chain assignment from sparse, unassigned NMR data
-
Bailey-Kellogg C, Widge A, Kelley JJ, Berardi MJ, Bushweller JH, Donald BR (2000) The NOESY jigsaw: automated protein secondary structure and main-chain assignment from sparse, unassigned NMR data. J Comput Biol 7:537-558
-
(2000)
J Comput Biol
, vol.7
, pp. 537-558
-
-
Bailey-Kellogg, C.1
Widge, A.2
Kelley, J.J.3
Berardi, M.J.4
Bushweller, J.H.5
Donald, B.R.6
-
4
-
-
4344648451
-
Automated analysis of protein NMR assignments and structures
-
PMID: 15303826
-
Baran MC, Huang YJ, Moseley HNB, Montelione GT (2004) Automated analysis of protein NMR assignments and structures. Chem Rev 104(8):3541-3556, PMID: 15303826
-
(2004)
Chem Rev
, vol.104
, Issue.8
, pp. 3541-3556
-
-
Baran, M.C.1
Huang, Y.J.2
Hnb, M.3
Montelione, G.T.4
-
5
-
-
0000714031
-
Automated sequence-specific NMR assignment of homologous proteins using the program GARANT
-
Bartels C, Billeter M, Güntert P, Wüthrich K (1996) Automated sequence-specific NMR assignment of homologous proteins using the program GARANT. J Biomol NMR 7:207-213 (Pubitemid 126709559)
-
(1996)
Journal of Biomolecular NMR
, vol.7
, Issue.3
, pp. 207-213
-
-
Bartels, C.1
Billeter, M.2
Guntert, P.3
Wuthrich, K.4
-
6
-
-
25844506708
-
Weak alignment NMR: A hawk-eyed view of biomolecular structure
-
DOI 10.1016/j.sbi.2005.08.006, PII S0959440X05001545, Carbohydrates and Glycoconjugates/Biophysical Methods
-
Bax A, Grishaev A (2005) Weak alignment NMR: a hawk-eyed view of biomolecular structure. Curr Opin in Struct Biol 15:563-570 (Pubitemid 41393488)
-
(2005)
Current Opinion in Structural Biology
, vol.15
, Issue.5
, pp. 563-570
-
-
Bax, A.1
Grishaev, A.2
-
7
-
-
55649119346
-
Solution NMR structure determination of proteins revisited
-
Billeter M, Wagner G, Wüthrich K (2008) Solution NMR structure determination of proteins revisited. J Biomol NMR 42(3): 155-158
-
(2008)
J Biomol NMR
, vol.42
, Issue.3
, pp. 155-158
-
-
Billeter, M.1
Wagner, G.2
Wüthrich, K.3
-
8
-
-
36748998784
-
HADDOCK versus HADDOCK: New features and performance of HADDOCK2.0 on the CAPRI targets
-
DOI 10.1002/prot.21723
-
de Vries SJ, van Dijk ADJ, Krzeminski M, van Dijk M, Thureau A, Hsu V, Wassenaar T, Bonvin AMJJ (2007) HADDOCK versus HADDOCK: new features and performance of HADDOCK2.0 on the CAPRI targets. Proteins 69(4):726-733 (Pubitemid 350210131)
-
(2007)
Proteins: Structure, Function and Genetics
, vol.69
, Issue.4
, pp. 726-733
-
-
De Vries, S.J.1
Van Dijk, A.D.J.2
Krzeminski, M.3
Van Dijk, M.4
Thureau, A.5
Hsu, V.6
Wassenaar, T.7
Bonvin, A.M.J.J.8
-
9
-
-
48549113136
-
Nuclear overhauser effects and the assignment of the proton NMR spectra of proteins
-
Dobson CM, Howarth MA, Redfield C (1984) Nuclear overhauser effects and the assignment of the proton NMR spectra of proteins. FEBS Lett 176:307-312
-
(1984)
FEBS Lett
, vol.176
, pp. 307-312
-
-
Dobson, C.M.1
Howarth, M.A.2
Redfield, C.3
-
10
-
-
0037442962
-
HADDOCK: A protein-protein docking approach based on biochemical or biophysical information
-
DOI 10.1021/ja026939x
-
Dominguez C, Boelens R, Bonvin AMJJ (2003) HADDOCK: a protein-protein docking approach based on biochemical or biophysical information. J Am Chem Soc 125(7):1731-1737 (Pubitemid 36232568)
-
(2003)
Journal of the American Chemical Society
, vol.125
, Issue.7
, pp. 1731-1737
-
-
Dominguez, C.1
Boelens, R.2
Bonvin, A.M.J.J.3
-
12
-
-
0031019983
-
Solution structure of the 30 kDa N-terminal domain of enzyme I of the Escherichia coli phosphoenolpyruvate:sugar phosphotransferase system by multidimensional NMR
-
DOI 10.1021/bi962924y
-
Garrett DS, Seok YJ, Liao DI, Peterkofsky A, Gronenborn AM, Clore GM (1997a) Solution structure of the 30 kda N-terminal domain of enzyme I of the Escherichia coli phosphoenolpyruvate:sugar phosphotransferase system by multidimensional NMR. Biochemistry 36:2517-2530 (Pubitemid 27106644)
-
(1997)
Biochemistry
, vol.36
, Issue.9
, pp. 2517-2530
-
-
Garrett, D.S.1
Seok, Y.-J.2
Liao, D.-I.3
Peterkofsky, A.4
Gronenborn, A.M.5
Clore, G.M.6
-
13
-
-
0030936560
-
Identification by NMR of the binding surface for the histidine- containing phosphocarrier protein HPr on the N-terminal domain of enzyme I of the Escherichia coli phosphotransferase system
-
DOI 10.1021/bi970221q
-
Garrett DS, Seok YJ, Peterkofsky A, Clore GM, Gronenborn AM (1997b) Identification by NMR of the binding surface for the histidine-containing phosphocarrier protein hpr on the N-terminal domain of enzyme I of the Escherichia coli phosphotransferase system. Biochemistry 36:4393-4398 (Pubitemid 27180285)
-
(1997)
Biochemistry
, vol.36
, Issue.15
, pp. 4393-4398
-
-
Garrett, D.S.1
Seok, Y.-J.2
Peterkofsky, A.3
Clore, G.M.4
Gronenborn, A.M.5
-
14
-
-
0032939176
-
Solution structure of the 40,000 M(r) phosphoryl transfer complex between the N-terminal domain of enzyme I and HPr
-
DOI 10.1038/5854
-
Garrett DS, Seok YJ, Peterkofsky A, Gronenborn AM, Clore GM (1999) Solution structure of the 40,000 Mr phosphoryl transfer complex between the N-terminal domain of enzyme I and HPr. Nat Struct Mol Biol 6:166-173 (Pubitemid 29069780)
-
(1999)
Nature Structural Biology
, vol.6
, Issue.2
, pp. 166-173
-
-
Garrett, D.S.1
Seok, Y.-J.2
Peterkofsky, A.3
Gronenborn, A.M.4
Marius Clore, G.5
-
15
-
-
58849162221
-
Automated structure determination from NMR spectra
-
Güntert P (2009) Automated structure determination from NMR spectra. Eur Biophys J 38(2):129-143
-
(2009)
Eur Biophys J
, vol.38
, Issue.2
, pp. 129-143
-
-
Güntert, P.1
-
16
-
-
1842486886
-
Automated structure determination of proteins by NMR spectroscopy
-
Gronwald W, Kalbitzer HR (2004) Automated structure determination of proteins by NMR spectroscopy. Prog Nucl Magn Reson Spectrosc 44(1-2):33-96
-
(2004)
Prog Nucl Magn Reson Spectrosc
, vol.44
, Issue.1-2
, pp. 33-96
-
-
Gronwald, W.1
Kalbitzer, H.R.2
-
17
-
-
0032174614
-
CAMRA: Chemical shift based computer aided protein NMR assignments
-
Gronwald W, Willard L, Jellard T, Boyko RF, Rajarathnam K, Wishart DS, Sönnichsen FD, Sykes BD (1998) CAMRA: chemical shift based computer aided protein NMR assignments. J Biomol NMR 12:395-405 (Pubitemid 128511305)
-
(1998)
Journal of Biomolecular NMR
, vol.12
, Issue.3
, pp. 395-405
-
-
Gronwald, W.1
Willard, L.2
Jellard, T.3
Boyko, R.F.4
Rajarathnam, K.5
Wishart, D.S.6
Sonnichsen, F.D.7
Sykes, B.D.8
-
18
-
-
0036962374
-
Assignment strategy for proteins with known structure
-
Hus JC, Prompers JJ, Brüschweiler R (2002) Assignment strategy for proteins with known structure. J Magn Reson 157:119-123
-
(2002)
J Magn Reson
, vol.157
, pp. 119-123
-
-
Hus, J.C.1
Prompers, J.J.2
Brüschweiler, R.3
-
19
-
-
0027340388
-
The 2.0-A resolution structure of Escherichia coli histidine-containing phosphocarrier protein HPr. A redetermination
-
Jia Z, Quail JW, Waygood EB, Delbaere LT (1993) The 2.0-A resolution structure of Escherichia coli histidine-containing phosphocarrier protein HPr. A redetermination. J Biol Chem 268(30):22490-22501 (Pubitemid 23318300)
-
(1993)
Journal of Biological Chemistry
, vol.268
, Issue.30
, pp. 22490-22501
-
-
Jia, Z.1
Quail, J.W.2
Waygood, E.B.3
Delbaere, L.T.J.4
-
20
-
-
4644234334
-
Mars - Robust automatic backbone assignment of proteins
-
DOI 10.1023/B:JNMR.0000042954.99056.ad
-
Jung YS, Zweckstetter M (2004) Mars-robust automatic backbone assignment of proteins. J Biomol NMR 30:11-23 (Pubitemid 39295128)
-
(2004)
Journal of Biomolecular NMR
, vol.30
, Issue.1
, pp. 11-23
-
-
Jung, Y.-S.1
Zweckstetter, M.2
-
21
-
-
0029881007
-
MOLMOL: A program for display and analysis of macromolecular structures
-
DOI 10.1016/0263-7855(96)00009-4
-
Koradi R, Billeter M, Wüthrich K (1996) MOLMOL: a program for display and analysis of macromolecular structures. J Mol Graph 14:51-55, 29-32 (Pubitemid 26152976)
-
(1996)
Journal of Molecular Graphics
, vol.14
, Issue.1
, pp. 51-55
-
-
Koradi, R.1
Billeter, M.2
Wuthrich, K.3
-
22
-
-
1842555458
-
An expectation/maximization nuclear vector replacement algorithm for automated NMR resonance assignments
-
DOI 10.1023/B:JNMR.0000019247.89110.e6
-
Langmead CJ, Donald BR (2004) An expectation/maximization nuclear vector replacement algorithm for automated NMR resonance assignments. J Biomol NMR 29:111-138 (Pubitemid 38444475)
-
(2004)
Journal of Biomolecular NMR
, vol.29
, Issue.2
, pp. 111-138
-
-
Langmead, C.J.1
Donald, B.R.2
-
23
-
-
3142588772
-
A polynomial-time nuclear vector replacement algorithm for automated NMR resonance assignments
-
DOI 10.1089/1066527041410436
-
Langmead CJ, Yan A, Lilien R, Wang L, Donald BR (2004) A polynomial-time nuclear vector replacement algorithm for automated NMR resonance assignments. J Comput Biol 11:277-298 (Pubitemid 38901664)
-
(2004)
Journal of Computational Biology
, vol.11
, Issue.2-3
, pp. 277-298
-
-
Langmead, C.J.1
Yan, A.2
Lilien, R.3
Wang, L.4
Donald, B.R.5
-
24
-
-
0030586030
-
The first step in sugar transport: Crystal structure of the amino terminal domain of enzyme I of the E. coli PEP: Sugar phosphotransferase system and a model of the phosphotransfer complex with HPr
-
DOI 10.1016/S0969-2126(96)00092-5
-
Liao DI, Silverton E, Seok YJ, Lee BR, Peterkofsky A, Davies DR (1996) The first step in sugar transport: crystal structure of the amino terminal domain of ensyme I of the E. coli PEP: sugar phosphotransferase system and a model of the phosphotransfer complex with HPr. Structure 4:861-872 (Pubitemid 26312369)
-
(1996)
Structure
, vol.4
, Issue.7
, pp. 861-872
-
-
Liao, D.-I.1
Silverton, E.2
Seok, Y.-J.3
Lee, B.R.4
Peterkofsky, A.5
Davies, D.R.6
-
25
-
-
0033145058
-
Order Matrix Analysis of Residual Dipolar Couplings Using Singular Value Decomposition
-
Losonczi JA, Andrec M, Fischer MW, Prestegard JH (1999) Order matrix analysis of residual dipolar couplings using singular value decomposition. J Magn Reson 138:334-342 (Pubitemid 129608294)
-
(1999)
Journal of Magnetic Resonance
, vol.138
, Issue.2
, pp. 334-342
-
-
Losonczi, J.A.1
Andrec, M.2
Fischer, M.W.F.3
Prestegard, J.H.4
-
26
-
-
0038703404
-
PROSHIFT: Protein chemical shift prediction using artificial neural networks
-
DOI 10.1023/A:1023060720156
-
Meiler J (2003) PROSHIFT: protein chemical shift prediction using artificial neural networks. J Biomol NMR 26:25-37 (Pubitemid 36553450)
-
(2003)
Journal of Biomolecular NMR
, vol.26
, Issue.1
, pp. 25-37
-
-
Meiler, J.1
-
27
-
-
0032857781
-
Automated analysis of NMR assignments and structures for proteins
-
DOI 10.1016/S0959-440X(99)00019-6
-
Moseley HN, Montelione GT (1999) Automated analysis of NMR assignments and structures for proteins. Curr Opin Struct Biol 9(5):635-642 (Pubitemid 29460592)
-
(1999)
Current Opinion in Structural Biology
, vol.9
, Issue.5
, pp. 635-642
-
-
Moseley, H.N.1
Montelione, G.T.2
-
28
-
-
0038407231
-
15N chemical shifts
-
DOI 10.1023/A:1023812930288
-
Neal S, Nip AM, Zhang H, Wishart DS (2003) Rapid and accurate calculation of protein 1H, 13C and 15N chemical shifts. J Biomol NMR 26:215-240 (Pubitemid 36758442)
-
(2003)
Journal of Biomolecular NMR
, vol.26
, Issue.3
, pp. 215-240
-
-
Neal, S.1
Nip, A.M.2
Zhang, H.3
Wishart, D.S.4
-
29
-
-
1542347916
-
15N-Labeled Paramagnetic Proteins
-
DOI 10.1021/ja039339m
-
Pintacuda G, Keniry MA, Huber T, Park AY, Dixon NE, Otting G (2004) Fast structure-based assignment of 15N HSQC spectra of selectively 15N-labeled paramagnetic proteins. J Am Chem Soc 126:2963-2970 (Pubitemid 38314301)
-
(2004)
Journal of the American Chemical Society
, vol.126
, Issue.9
, pp. 2963-2970
-
-
Pintacuda, G.1
Keniry, M.A.2
Huber, T.3
Park, A.Y.4
Dixon, N.E.5
Otting, G.6
-
30
-
-
33645724050
-
Stereospecific assignments of protein NMR resonances based on the tertiary structure and 2D/3D NOE data
-
Pristovsek P, Franzoni L (2006) Stereospecific assignments of protein NMR resonances based on the tertiary structure and 2D/3D NOE data. J Comput Chem 27:791-797
-
(2006)
J Comput Chem
, vol.27
, pp. 791-797
-
-
Pristovsek, P.1
Franzoni, L.2
-
31
-
-
0036462495
-
Semiautomatic sequence-specific assignment of proteins based on the tertiary structure-the program st2nmr
-
DOI 10.1002/jcc.10011
-
Pristovsek P, Rüterjans H, Jerala R (2002) Semiautomatic sequencespecific assignment of proteins based on the tertiary structure-the program st2nmr. J Comput Chem 23:335-340 (Pubitemid 34137473)
-
(2002)
Journal of Computational Chemistry
, vol.23
, Issue.3
, pp. 335-340
-
-
Pristovek, P.1
Ruterjans, H.2
Jerala, R.3
-
32
-
-
35848958773
-
Combined chemical shift changes and amino acid specific chemical shift mapping of protein-protein interactions
-
DOI 10.1007/s10858-007-9197-z
-
Schumann FH, Riepl H, Maurer T, Gronwald W, Neidig KP, Kalbitzer HR (2007) Combined chemical shift changes and amino acid specific chemical shift mapping of protein-protein interactions. J Biomol NMR 39(4):275-289 (Pubitemid 350055750)
-
(2007)
Journal of Biomolecular NMR
, vol.39
, Issue.4
, pp. 275-289
-
-
Schumann, F.H.1
Riepl, H.2
Maurer, T.3
Gronwald, W.4
Neidig, K.-P.5
Kalbitzer, H.R.6
-
33
-
-
0035079181
-
A refined solution structure of hen lysozyme determined using residual dipolar coupling data
-
DOI 10.1110/ps.43301
-
Schwalbe H, Grimshaw SB, Spencer A, Buck M, Boyd J, Dobson CM, Redfield C, Smith LJ (2001) A refined solution structure of hen lysozyme determined using residual dipolar coupling data. Protein Sci 10:677-688 (Pubitemid 32240493)
-
(2001)
Protein Science
, vol.10
, Issue.4
, pp. 677-688
-
-
Schwalbe, H.1
Grimshaw, S.B.2
Spencer, A.3
Buck, M.4
Boyd, J.5
Dobson, C.M.6
Redfield, C.7
Smith, L.J.8
-
34
-
-
34547179849
-
Protein backbone chemical shifts predicted from searching a database for torsion angle and sequence homology
-
DOI 10.1007/s10858-007-9166-6
-
Shen Y, Bax A (2007) Protein backbone chemical shifts predicted from searching a database for torsion angle and sequence homology. J Biomol NMR 38:289-302 (Pubitemid 47108511)
-
(2007)
Journal of Biomolecular NMR
, vol.38
, Issue.4
, pp. 289-302
-
-
Shen, Y.1
Bax, A.2
-
35
-
-
60149087377
-
NOEnet - Use of NOE networks for NMR resonance assignment of proteins with known 3D structure
-
Stratmann D, van Heijenoort C, Guittet E (2009) NOEnet - Use of NOE networks for NMR resonance assignment of proteins with known 3D structure. Bioinformatics 25(4):474-481
-
(2009)
Bioinformatics
, vol.25
, Issue.4
, pp. 474-481
-
-
Stratmann, D.1
Van Heijenoort, C.2
Guittet, E.3
-
36
-
-
0000695363
-
High-resolution structure (1.33 A) of a HEW lysozyme tetragonal crystal grown in the APCF apparatus. Data and structural comparison with a crystal grown under microgravity from spaceHab-01 mission
-
Vaney MC, Maignan S, Riés-Kautt M, Ducruix A (1996) Highresolution structure (1.33 Å) of a hew lysozyme tetragonal crystal grown in the APCF apparatus. data and structural comparison with a crystal grown under microgravity from SpaceHab-01 mission. Acta Crystallogr D Biol Crystallogr 52:505-517 (Pubitemid 126516233)
-
(1996)
Acta Crystallographica Section D: Biological Crystallography
, vol.52
, Issue.3
, pp. 505-517
-
-
Vaney, M.C.1
Maignan, S.2
Ries-Kautt, M.3
Ducruix, A.4
-
37
-
-
0028905499
-
Highresolution structure of the phosphorylated form of the histidinecontaining phosphocarrier protein HPr from Escherichia coli determined by restrained molecular dynamics from NMR-NOE data
-
van Nuland NA, Boelens R, Scheek RM, Robillard GT (1995) Highresolution structure of the phosphorylated form of the histidinecontaining phosphocarrier protein HPr from Escherichia coli determined by restrained molecular dynamics from NMR-NOE data. J Mol Biol 246(1):180-193
-
(1995)
J Mol Biol
, vol.246
, Issue.1
, pp. 180-193
-
-
Van Nuland, N.A.1
Boelens, R.2
Scheek, R.M.3
Robillard, G.T.4
-
38
-
-
0033626264
-
13C assignments of native hen egg- white lysozyme [1]
-
DOI 10.1023/A:1008359624072
-
Wang Y, Bjorndahl TC, Wishart DS (2000) Complete 1H and noncarbonylic 13C assignments of native hen egg-white lysozyme. J Biomol NMR 17:83-84 (Pubitemid 30434841)
-
(2000)
Journal of Biomolecular NMR
, vol.17
, Issue.1
, pp. 83-84
-
-
Wang, Y.1
Bjorndahl, T.C.2
Wishart, D.S.3
-
39
-
-
61549100580
-
Automated protein structure calculation from NMR data
-
Williamson M, Craven C (2009) Automated protein structure calculation from NMR data. J Biomol NMR
-
(2009)
J Biomol NMR
-
-
Williamson, M.1
Craven, C.2
-
41
-
-
46249086182
-
Contact replacement for NMR resonance assignment
-
DOI 10.1093/bioinformatics/btn167
-
Xiong F, Pandurangan G, Bailey-Kellogg C (2008) Contact replacement for NMR resonance assignment. Bioinformatics 24: i205-i213 (Pubitemid 351911675)
-
(2008)
Bioinformatics
, vol.24
, Issue.13
-
-
Xiong, F.1
Pandurangan, G.2
Bailey-Kellogg, C.3
-
42
-
-
0035544152
-
Automated prediction of 15N, 13Calpha, 13Cbeta and 13C' chemical shifts in proteins using a density functional database
-
Xu XP, Case DA (2001) Automated prediction of 15N, 13Calpha, 13Cbeta and 13C' chemical shifts in proteins using a density functional database. J Biomol NMR 21:321-333
-
(2001)
J Biomol NMR
, vol.21
, pp. 321-333
-
-
Xu, X.P.1
Case, D.A.2
|