-
1
-
-
40749095606
-
IdentiWcation and characterization of NBS-LRR genes in the model plant Medicago truncatula
-
Ameline-Torregrosa C, Wang BB, O'Bleness MS, Deshpande S, Zhu H, Roe B, Young ND, Cannon SB (2008) IdentiWcation and characterization of NBS-LRR genes in the model plant Medicago truncatula. Plant Physiol 146:5-21
-
(2008)
Plant Physiol
, vol.146
, pp. 5-21
-
-
Ameline-Torregrosa, C.1
Wang, B.B.2
O'bleness, M.S.3
Deshpande, S.4
Zhu, H.5
Roe, B.6
Young, N.D.7
Cannon, S.B.8
-
2
-
-
0029197507
-
The value of prior knowledge in discovering motifs with MEME
-
Bailey TL, Elkan C (2005) The value of prior knowledge in discovering motifs with MEME. Proc Int Conf Intell Syst Mol Biol 3:21-29
-
(2005)
Proc Int Conf Intell Syst Mol Biol
, vol.3
, pp. 21-29
-
-
Bailey, T.L.1
Elkan, C.2
-
4
-
-
20344407697
-
Evolution of DNA sequence nonhomologies among maize inbreds
-
Brunner S, Fengler K, Morgante M, Tingey S, Rafalski A (2005) Evolution of DNA sequence nonhomologies among maize inbreds. Plant Cell 17:343-360
-
(2005)
Plant Cell
, vol.17
, pp. 343-360
-
-
Brunner, S.1
Fengler, K.2
Morgante, M.3
Tingey, S.4
Rafalski, A.5
-
5
-
-
77649190691
-
Strong positive selection drives rapid diversiWcation of R-genes in Arabidopsis relatives
-
Chen Q, Han Z, Jiang H, Tian D, Yang S (2010) Strong positive selection drives rapid diversiWcation of R-genes in Arabidopsis relatives. J Mol Evol 70:137-148
-
(2010)
J Mol Evol
, vol.70
, pp. 137-148
-
-
Chen, Q.1
Han, Z.2
Jiang, H.3
Tian, D.4
Yang, S.5
-
6
-
-
0035859020
-
Plant pathogens and integrated defence responses to infection
-
Dangl JL, Jones JD (2001) Plant pathogens and integrated defence responses to infection. Nature 411:826-833
-
(2001)
Nature
, vol.411
, pp. 826-833
-
-
Dangl, J.L.1
Jones, J.D.2
-
7
-
-
0033101488
-
IdentiWcation of regions in alleles of the Xax rust resistance gene L that determine diVerences in gene-for-gene speciWcity
-
Ellis JG, Lawrence GJ, Luck JE, Dodds PN (1999) IdentiWcation of regions in alleles of the Xax rust resistance gene L that determine diVerences in gene-for-gene speciWcity. Plant Cell 11:495-506
-
(1999)
Plant Cell
, vol.11
, pp. 495-506
-
-
Ellis, J.G.1
Lawrence, G.J.2
Luck, J.E.3
Dodds, P.N.4
-
8
-
-
46249105777
-
Natural selection shapes genome-wide patterns of copy-number polymorphism in Drosophila melanogaster
-
Emerson JJ, Cardoso-Moreira M, Borevitz JO, Long M (2008) Natural selection shapes genome-wide patterns of copy-number polymorphism in Drosophila melanogaster. Science 320:1629-1631
-
(2008)
Science
, vol.320
, pp. 1629-1631
-
-
Emerson, J.J.1
Cardoso-Moreira, M.2
Borevitz, J.O.3
Long, M.4
-
9
-
-
0036213939
-
Evolutionary dynamics of grass genomes
-
Gaut BS (2002) Evolutionary dynamics of grass genomes. New Phytol 154:15-28
-
(2002)
New Phytol
, vol.154
, pp. 15-28
-
-
Gaut, B.S.1
-
12
-
-
41149146663
-
The nuclear genome of Brachypodium distachyon: Analysis of BAC end sequences
-
Huo N, Lazo GR, Vogel JP, You FM, Ma Y, Hayden DM, Coleman-Derr D, Hill TA, Dvorak J, Anderson OD, Luo MC, Gu YQ (2008) The nuclear genome of Brachypodium distachyon: analysis of BAC end sequences. Funct Integr Genom 8:135-147
-
(2008)
Funct Integr Genom
, vol.8
, pp. 135-147
-
-
Huo, N.1
Lazo, G.R.2
Vogel, J.P.3
You, F.M.4
Ma, Y.5
Hayden, D.M.6
Coleman-Derr, D.7
Hill, T.A.8
Dvorak, J.9
Anderson, O.D.10
Luo, M.C.11
Gu, Y.Q.12
-
13
-
-
33751100626
-
The plant immune system
-
Jones JD, Dangl JL (2006) The plant immune system. Nature 444:323-329
-
(2006)
Nature
, vol.444
, pp. 323-329
-
-
Jones, J.D.1
Dangl, J.L.2
-
14
-
-
33750831582
-
Annotation, submission and screening of repetitive elements in Repbase: Repbase-Submitter and Censor
-
Kohany O, Gentles AJ, Hankus L, Jurka J (2006) Annotation, submission and screening of repetitive elements in Repbase: Repbase-Submitter and Censor. BMC Bioinform 7:474
-
(2006)
BMC Bioinform
, vol.7
, pp. 474
-
-
Kohany, O.1
Gentles, A.J.2
Hankus, L.3
Jurka, J.4
-
15
-
-
14744270315
-
Multiple genetic processes result in heterogeneous rates of evolution within the major cluster disease resistance genes in lettuce
-
Kuang H, Woo SS, Meyers BC, Nevo E, Michelmor RW (2004) Multiple genetic processes result in heterogeneous rates of evolution within the major cluster disease resistance genes in lettuce. Plant Cell 16:2870-2894
-
(2004)
Plant Cell
, vol.16
, pp. 2870-2894
-
-
Kuang, H.1
Woo, S.S.2
Meyers, B.C.3
Nevo, E.4
Michelmor, R.W.5
-
16
-
-
0242354129
-
The origin of new genes: Glimpses from the young and old
-
Long M, Betrán E, Thornton K, Wang W (2003) The origin of new genes: glimpses from the young and old. Nat Rev Genet 4:865-875
-
(2003)
Nat Rev Genet
, vol.4
, pp. 865-875
-
-
Long, M.1
Betrán, E.2
Thornton, K.3
Wang, W.4
-
17
-
-
0026356891
-
Predicting coiled coils from protein sequences
-
Lupas A, Van Dyke M, Stock J (1991) Predicting coiled coils from protein sequences. Science 252:1162-1164
-
(1991)
Science
, vol.252
, pp. 1162-1164
-
-
Lupas, A.1
Van Dyke, M.2
Stock, J.3
-
18
-
-
0025289181
-
The analysis of population survey data on DNA sequence variation
-
Lynch M, Crease TJ (1990) The analysis of population survey data on DNA sequence variation. Mol Biol Evol 7:377-394
-
(1990)
Mol Biol Evol
, vol.7
, pp. 377-394
-
-
Lynch, M.1
Crease, T.J.2
-
19
-
-
0037197985
-
A single domestication for maize shown by multilocus microsatellite genotyping
-
Matsuoka Y, Vigouroux Y, Goodman MM, Sanche GJ, Buckler E, Doebley J (2002) A single domestication for maize shown by multilocus microsatellite genotyping. Proc Natl Acad Sci USA 99:6080-6084
-
(2002)
Proc Natl Acad Sci USA
, vol.99
, pp. 6080-6084
-
-
Matsuoka, Y.1
Vigouroux, Y.2
Goodman, M.M.3
Sanche, G.J.4
Buckler, E.5
Doebley, J.6
-
20
-
-
40849086403
-
Molecular diversity at the plant- pathogen interface
-
McDowell JM, Simon SA (2008) Molecular diversity at the plant- pathogen interface. Dev Comp Immunol 32:736-744
-
(2008)
Dev Comp Immunol
, vol.32
, pp. 736-744
-
-
McDowell, J.M.1
Simon, S.A.2
-
22
-
-
0037390933
-
Genome-wide analysis of NBS-LRR-encoding genes in Arabidopsis
-
Meyers BC, Kozik A, Griego A, Kuang H, Michelmore RW (2003) Genome-wide analysis of NBS-LRR-encoding genes in Arabidopsis. Plant Cell 15:809-834
-
(2003)
Plant Cell
, vol.15
, pp. 809-834
-
-
Meyers, B.C.1
Kozik, A.2
Griego, A.3
Kuang, H.4
Michelmore, R.W.5
-
23
-
-
0022507362
-
Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions
-
Nei M, Gojobori T (1986) Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions. Mol Biol Evol 3:418-426
-
(1986)
Mol Biol Evol
, vol.3
, pp. 418-426
-
-
Nei, M.1
Gojobori, T.2
-
24
-
-
58449137410
-
The Sorghum bicolor genome and the diversiWcation of grasses
-
Paterson AH, Bowers JE, Bruggmann R, Dubchak I et al (2009) The Sorghum bicolor genome and the diversiWcation of grasses. Nature 457:551-556
-
(2009)
Nature
, vol.457
, pp. 551-556
-
-
Paterson, A.H.1
Bowers, J.E.2
Bruggmann, R.3
Dubchak, I.4
-
25
-
-
67449161515
-
Genome-wide analysis of Carica papaya reveals a small NBS resistance gene family
-
Porter BW, Paidi M, Ming R, Alam M, Nishijima WT, Zhu YJ (2009) Genome-wide analysis of Carica papaya reveals a small NBS resistance gene family. Mol Genet Genom 281:266-609
-
(2009)
Mol Genet Genom
, vol.281
, pp. 266-609
-
-
Porter, B.W.1
Paidi, M.2
Ming, R.3
Alam, M.4
Nishijima, W.T.5
Zhu, Y.J.6
-
26
-
-
70449382810
-
Coevolution between a family of parasite virulence eVectors and a class of LINE-1 retrotransposons
-
Sacristán S, Vigouroux M, Pedersen C, Skamnioti P, Thordal-Christensen H, Micali C, Brown JK, Ridout CJ (2009) Coevolution between a family of parasite virulence eVectors and a class of LINE-1 retrotransposons. PLOS One 4:e7463
-
(2009)
PLOS One
, vol.4
-
-
Sacristán, S.1
Vigouroux, M.2
Pedersen, C.3
Skamnioti, P.4
Thordal-Christensen, H.5
Micali, C.6
Brown, J.K.7
Ridout, C.J.8
-
27
-
-
0037155804
-
Monitoring the switch from housekeeping to pathogen defense metabolism in Arabidopsis thaliana using cDNA arrays
-
Scheideler M, Schlaich NL, Fellenberg K, Beissbarth T, Hauser NC, Vingron M, Slusarenko AJ, Hoheisel JD (2002) Monitoring the switch from housekeeping to pathogen defense metabolism in Arabidopsis thaliana using cDNA arrays. J Biol Chem 277:10555-10561
-
(2002)
J Biol Chem
, vol.277
, pp. 10555-10561
-
-
Scheideler, M.1
Schlaich, N.L.2
Fellenberg, K.3
Beissbarth, T.4
Hauser, N.C.5
Vingron, M.6
Slusarenko, A.J.7
Hoheisel, J.D.8
-
28
-
-
70450202132
-
The B73 maize genome: Complexity, diversity, and dynamics
-
Schnable PS, Ware D, Fulton RS, Stein JC, Wei F et al (2009) The B73 maize genome: complexity, diversity, and dynamics. Science 326:1112-1115
-
(2009)
Science
, vol.326
, pp. 1112-1115
-
-
Schnable, P.S.1
Ware, D.2
Fulton, R.S.3
Stein, J.C.4
Wei, F.5
-
29
-
-
52449132063
-
Insertion DNA promotes ectopic recombination during meiosis in Arabidopsis
-
Sun X, Zhang Y, Yang S, Chen JQ, Hohn B, Tian D (2008) Insertion DNA promotes ectopic recombination during meiosis in Arabidopsis. Mol Biol Evol 25:2079-2083
-
(2008)
Mol Biol Evol
, vol.25
, pp. 2079-2083
-
-
Sun, X.1
Zhang, Y.2
Yang, S.3
Chen, J.Q.4
Hohn, B.5
Tian, D.6
-
30
-
-
34547781750
-
MEGA4: Molecular evolutionary genetics analysis (MEGA) software version 4.0
-
Tamura K, Dudley J, Nei M, Kumar S (2007) MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol Biol Evol 24:1596-1599
-
(2007)
Mol Biol Evol
, vol.24
, pp. 1596-1599
-
-
Tamura, K.1
Dudley, J.2
Nei, M.3
Kumar, S.4
-
31
-
-
0027968068
-
CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-speciWc gap penalties and weight matrix choice
-
Thompson JD, Higgins DG, Gibson TJ (1994) CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-speciWc gap penalties and weight matrix choice. Nucleic Acids Res 22:4673-4680
-
(1994)
Nucleic Acids Res
, vol.22
, pp. 4673-4680
-
-
Thompson, J.D.1
Higgins, D.G.2
Gibson, T.J.3
-
32
-
-
0037653656
-
Fitness costs of R-gene-mediated resistance in Arabidopsis thaliana
-
Tian D, Traw MB, Chen JQ, Kreitman M, Bergelson J (2003) Fitness costs of R-gene-mediated resistance in Arabidopsis thaliana. Nature 423:74-77
-
(2003)
Nature
, vol.423
, pp. 74-77
-
-
Tian, D.1
Traw, M.B.2
Chen, J.Q.3
Kreitman, M.4
Bergelson, J.5
-
33
-
-
33845215653
-
Remarkable variation in maize ge- nome structure inferred from haplotype diversity at the bz locus
-
Wang QH, Dooner H (2006) Remarkable variation in maize ge- nome structure inferred from haplotype diversity at the bz locus. Proc Natl Acad Sci USA 103:17644-17649
-
(2006)
Proc Natl Acad Sci USA
, vol.103
, pp. 17644-17649
-
-
Wang, Q.H.1
Dooner, H.2
-
34
-
-
33747465505
-
High rate of chimeric gene origination by retroposition in plant genomes
-
Wang W, Zheng H, Fan C, Li J, Shi J et al (2006) High rate of chimeric gene origination by retroposition in plant genomes. Plant Cell 18:1791-1802
-
(2006)
Plant Cell
, vol.18
, pp. 1791-1802
-
-
Wang, W.1
Zheng, H.2
Fan, C.3
Li, J.4
Shi, J.5
-
35
-
-
0036742516
-
Genetic and molecular characterization of the maize rp3 rust resistance locus
-
Webb CA, Richter TE, Collins NC, Nicolas M, Trick HN, Pryor T, Hulbert SH (2002) Genetic and molecular characterization of the maize rp3 rust resistance locus. Genetics 162:381-394
-
(2002)
Genetics
, vol.162
, pp. 381-394
-
-
Webb, C.A.1
Richter, T.E.2
Collins, N.C.3
Nicolas, M.4
Trick, H.N.5
Pryor, T.6
Hulbert, S.H.7
-
36
-
-
33748532213
-
Genome-wide investigation on the genetic variations of rice disease resistance genes
-
Yang S, Feng Z, Zhang X, Jiang K, Jin X, Hang Y, Chen JQ, Tian D (2006) Genome-wide investigation on the genetic variations of rice disease resistance genes. Plant Mol Biol 62:181-193
-
(2006)
Plant Mol Biol
, vol.62
, pp. 181-193
-
-
Yang, S.1
Feng, Z.2
Zhang, X.3
Jiang, K.4
Jin, X.5
Hang, Y.6
Chen, J.Q.7
Tian, D.8
-
37
-
-
49749103942
-
Recent duplication dominates the expansion of the NBS-encoding genes in two woody species
-
Yang S, Zhang X, Yue J, Tian D, Chen JQ (2008) Recent duplication dominates the expansion of the NBS-encoding genes in two woody species. Mol Genet Genom 280:187-198
-
(2008)
Mol Genet Genom
, vol.280
, pp. 187-198
-
-
Yang, S.1
Zhang, X.2
Yue, J.3
Tian, D.4
Chen, J.Q.5
-
38
-
-
64949176033
-
Genetic signature of rice domestication shown by a variety of genes
-
Zhang Y, Wang J, Zhang X, Chen JQ, Tian D, Yang S (2009) Genetic signature of rice domestication shown by a variety of genes. J Mol Evol 68:393-402
-
(2009)
J Mol Evol
, vol.68
, pp. 393-402
-
-
Zhang, Y.1
Wang, J.2
Zhang, X.3
Chen, J.Q.4
Tian, D.5
Yang, S.6
-
39
-
-
3042575125
-
Genome-wide identiWcation of NBS genes in rice reveals signiWcant expansion of divergent non-TIR NBS Genes
-
Zhou T, Wang Y, Chen JQ, Araki H, Jing Z, Jiang K, Shen J, Tian D (2004) Genome-wide identiWcation of NBS genes in rice reveals signiWcant expansion of divergent non-TIR NBS Genes. Mol Genet Genom 271:402-415
-
(2004)
Mol Genet Genom
, vol.271
, pp. 402-415
-
-
Zhou, T.1
Wang, Y.2
Chen, J.Q.3
Araki, H.4
Jing, Z.5
Jiang, K.6
Shen, J.7
Tian, D.8
|