-
1
-
-
0020712468
-
The effect of high-pressure upon proteins and other biomolecules
-
Weber G., and Drickamer H.G. The effect of high-pressure upon proteins and other biomolecules. Q. Rev. Biophys. 16 (1983) 89-112
-
(1983)
Q. Rev. Biophys.
, vol.16
, pp. 89-112
-
-
Weber, G.1
Drickamer, H.G.2
-
2
-
-
0000580978
-
Proteins and pressure
-
Frauenfelder H., Alberding N.A., Ansari A., Braunstein D., Cowen B.R., Hong M.K., Ihen I.E.T., Johnson J.B., and Luck S. Proteins and pressure. J. Phys. Chem. 94 (1990) 1024-1037
-
(1990)
J. Phys. Chem.
, vol.94
, pp. 1024-1037
-
-
Frauenfelder, H.1
Alberding, N.A.2
Ansari, A.3
Braunstein, D.4
Cowen, B.R.5
Hong, M.K.6
Ihen, I.E.T.7
Johnson, J.B.8
Luck, S.9
-
3
-
-
0023055734
-
Pressure dissociation and conformational drift of the β dimer of tryptophan synthase
-
Silva J.L., Miles E.W., and Weber G. Pressure dissociation and conformational drift of the β dimer of tryptophan synthase. Biochemistry 25 (1986) 5780-5786
-
(1986)
Biochemistry
, vol.25
, pp. 5780-5786
-
-
Silva, J.L.1
Miles, E.W.2
Weber, G.3
-
4
-
-
0028220701
-
Proteins under pressure: the influence of high hydrostatic pressure on structure, function and assembly of proteins and protein complexes
-
Gross M., and Jaenicke R. Proteins under pressure: the influence of high hydrostatic pressure on structure, function and assembly of proteins and protein complexes. Eur. J. Biochem. 221 (1994) 617-630
-
(1994)
Eur. J. Biochem.
, vol.221
, pp. 617-630
-
-
Gross, M.1
Jaenicke, R.2
-
5
-
-
0028226052
-
High-pressure NMR-spectroscopy of proteins and membranes
-
Jonas J., and Jonas A. High-pressure NMR-spectroscopy of proteins and membranes. Annu. Rev. Biophys. Biomol. Struct. 23 (1994) 287-318
-
(1994)
Annu. Rev. Biophys. Biomol. Struct.
, vol.23
, pp. 287-318
-
-
Jonas, J.1
Jonas, A.2
-
6
-
-
3342936435
-
High-pressure NMR spectroscopy for characterizing folding intermediates and denatured states of proteins
-
Kamatari Y.O., Kitahara R., Yamada H., Yokoyama S., and Akasaka K. High-pressure NMR spectroscopy for characterizing folding intermediates and denatured states of proteins. Methods (S. Diego, Calif.) 34 1 (2004, September) 133-143
-
(2004)
Methods (S. Diego, Calif.)
, vol.34
, Issue.1
, pp. 133-143
-
-
Kamatari, Y.O.1
Kitahara, R.2
Yamada, H.3
Yokoyama, S.4
Akasaka, K.5
-
7
-
-
0028217082
-
Pressure stabilization of proteins from extreme thermophiles
-
Hei D.J., and Clark D.S. Pressure stabilization of proteins from extreme thermophiles. Appl. Environ. Microbiol. 60 (1994) 932-939
-
(1994)
Appl. Environ. Microbiol.
, vol.60
, pp. 932-939
-
-
Hei, D.J.1
Clark, D.S.2
-
8
-
-
0029832690
-
Pressure effects on enzyme activity and stability at high temperatures
-
Michels P.C., Hei D., and Clark D.S. Pressure effects on enzyme activity and stability at high temperatures. Adv. Protein Chem. 48 (1996) 341-376
-
(1996)
Adv. Protein Chem.
, vol.48
, pp. 341-376
-
-
Michels, P.C.1
Hei, D.2
Clark, D.S.3
-
9
-
-
36849150819
-
Thermodynamics of unfolding
-
Kauzmann W. Thermodynamics of unfolding. Nature 325 (1987) 763-764
-
(1987)
Nature
, vol.325
, pp. 763-764
-
-
Kauzmann, W.1
-
10
-
-
0037171151
-
Pressure effects on intra- and intermolecular interactions within proteins
-
Boonyaratanakornkit B.B., Park C.B., and Clark D.S. Pressure effects on intra- and intermolecular interactions within proteins. Biochim. Biophys. Acta 1595 (2002) 235-249
-
(2002)
Biochim. Biophys. Acta
, vol.1595
, pp. 235-249
-
-
Boonyaratanakornkit, B.B.1
Park, C.B.2
Clark, D.S.3
-
11
-
-
0015820466
-
Pressure denaturation of metmyoglobin
-
Zipp A., and Kauzmann W. Pressure denaturation of metmyoglobin. Biochemistry 12 (1973) 4217-4227
-
(1973)
Biochemistry
, vol.12
, pp. 4217-4227
-
-
Zipp, A.1
Kauzmann, W.2
-
12
-
-
0031789585
-
Probing the contribution of internal cavities to the volume change of protein unfolding under pressure
-
Frye K.J., and Royer C.A. Probing the contribution of internal cavities to the volume change of protein unfolding under pressure. Protein Sci. 7 (1998) 2217-2222
-
(1998)
Protein Sci.
, vol.7
, pp. 2217-2222
-
-
Frye, K.J.1
Royer, C.A.2
-
13
-
-
0032539604
-
The pressure dependence of hydrophobic interactions is consistent with the observed pressure denaturation of proteins
-
Hummer G., Garde S., García A.E., Paulaitis M.E., and Pratt L.R. The pressure dependence of hydrophobic interactions is consistent with the observed pressure denaturation of proteins. PNAS 95 (1998) 1552-1555
-
(1998)
PNAS
, vol.95
, pp. 1552-1555
-
-
Hummer, G.1
Garde, S.2
García, A.E.3
Paulaitis, M.E.4
Pratt, L.R.5
-
14
-
-
0031097214
-
Monte Carlo study of the effect of the effect of pressure on hydrophobic association
-
Payne V.A., Matubayasi N., Murphy L.R., and Levy R.M. Monte Carlo study of the effect of the effect of pressure on hydrophobic association. J. Phys. Chem., B 101 (1997) 2054-2060
-
(1997)
J. Phys. Chem., B
, vol.101
, pp. 2054-2060
-
-
Payne, V.A.1
Matubayasi, N.2
Murphy, L.R.3
Levy, R.M.4
-
15
-
-
0025186451
-
Structural characterization of a partly folded apomyoglobin intermediate
-
Hughson F.M., Wright P.E., and Baldwin R.L. Structural characterization of a partly folded apomyoglobin intermediate. Science 249 (1990) 1544-1548
-
(1990)
Science
, vol.249
, pp. 1544-1548
-
-
Hughson, F.M.1
Wright, P.E.2
Baldwin, R.L.3
-
16
-
-
0026281093
-
Experimental studies of pathways of protein folding, protein conformation
-
Baldwin R.L. Experimental studies of pathways of protein folding, protein conformation. Cibu Found. Symp. 161 (1991) 190-221
-
(1991)
Cibu Found. Symp.
, vol.161
, pp. 190-221
-
-
Baldwin, R.L.1
-
17
-
-
0027749370
-
Formation of a molten globule intermediate early in the kinetic folding pathway of apomyoglobin
-
Jennings P.A., and Wright P.E. Formation of a molten globule intermediate early in the kinetic folding pathway of apomyoglobin. Science 262 (1993) 892-896
-
(1993)
Science
, vol.262
, pp. 892-896
-
-
Jennings, P.A.1
Wright, P.E.2
-
18
-
-
0028264083
-
Kinetic-study on myoglobin refolding monitored by 5 optical probe stopped-flow methods
-
Chiba K., Ikai A., Kawamurakonishi Y., and Kihara H. Kinetic-study on myoglobin refolding monitored by 5 optical probe stopped-flow methods. Proteins 19 (1994) 110-119
-
(1994)
Proteins
, vol.19
, pp. 110-119
-
-
Chiba, K.1
Ikai, A.2
Kawamurakonishi, Y.3
Kihara, H.4
-
20
-
-
0036291143
-
High pressure NMR reveals that apomyoglobin is an equilibrium mixture from the native to the unfolded
-
Kitahara R., Yamada H., Akasaka K., and Wright P.E. High pressure NMR reveals that apomyoglobin is an equilibrium mixture from the native to the unfolded. J. Mol. Biol. 320 (2002) 311-319
-
(2002)
J. Mol. Biol.
, vol.320
, pp. 311-319
-
-
Kitahara, R.1
Yamada, H.2
Akasaka, K.3
Wright, P.E.4
-
21
-
-
0027316216
-
Molecular dynamics simulations of un-folding of apomyoglobin in water
-
Tirado-Rives J., and Jorgensen W.L. Molecular dynamics simulations of un-folding of apomyoglobin in water. Biochemistry 32 (1993) 4175-4184
-
(1993)
Biochemistry
, vol.32
, pp. 4175-4184
-
-
Tirado-Rives, J.1
Jorgensen, W.L.2
-
22
-
-
0029011910
-
Molecular-dynamics simulations of isolated helices of myoglobin
-
Hirst J.D., and Brooks C.L. Molecular-dynamics simulations of isolated helices of myoglobin. Biochemistry 34 (1995) 7614-7621
-
(1995)
Biochemistry
, vol.34
, pp. 7614-7621
-
-
Hirst, J.D.1
Brooks, C.L.2
-
23
-
-
0026785575
-
Molecular dynamics simulation of solvated protein at high pressure
-
Kitchen D.B., Reed L.H., and Levy R.M. Molecular dynamics simulation of solvated protein at high pressure. Biochemistry 31 (1992) 10083-10093
-
(1992)
Biochemistry
, vol.31
, pp. 10083-10093
-
-
Kitchen, D.B.1
Reed, L.H.2
Levy, R.M.3
-
26
-
-
0000411306
-
Constant-pressure molecular dynamics techniques applied to complex molecular systems and solvated proteins
-
Paci E., and Marchi M. Constant-pressure molecular dynamics techniques applied to complex molecular systems and solvated proteins. J. Phys. Chem. 100 (1996) 4314-4322
-
(1996)
J. Phys. Chem.
, vol.100
, pp. 4314-4322
-
-
Paci, E.1
Marchi, M.2
-
27
-
-
0028926875
-
Computational approaches to study protein unfolding: hen egg white lyzozyme as a case study
-
Hunenberger P.E., Mark A.E., and van Gunsteren W.F. Computational approaches to study protein unfolding: hen egg white lyzozyme as a case study. Proteins 21 (1995) 196-213
-
(1995)
Proteins
, vol.21
, pp. 196-213
-
-
Hunenberger, P.E.1
Mark, A.E.2
van Gunsteren, W.F.3
-
29
-
-
0035789518
-
Gromacs 3.0: a package for molecular simulation and trajectory analysis
-
Lindahl E., Hess B., and van der Spoel D. Gromacs 3.0: a package for molecular simulation and trajectory analysis. J. Mol. Mod. 7 (2001) 306-317
-
(2001)
J. Mol. Mod.
, vol.7
, pp. 306-317
-
-
Lindahl, E.1
Hess, B.2
van der Spoel, D.3
-
30
-
-
2142813682
-
Computer simulation of molecular dynamics: methodology, applications, and perspectives in chemistry
-
van Gunsteren W.F., and Berendsen H.J.C. Computer simulation of molecular dynamics: methodology, applications, and perspectives in chemistry. Angew. Chem., Int. Ed. Engl. 29 (1990) 992-1023
-
(1990)
Angew. Chem., Int. Ed. Engl.
, vol.29
, pp. 992-1023
-
-
van Gunsteren, W.F.1
Berendsen, H.J.C.2
-
31
-
-
33646482043
-
-
W.F. van Gunsteren, H.J.C. Berendsen, Gromos-87 manual. Biomos BV Nijenborgh 4, 9747 AG Groningen, The Netherlands 1987.
-
-
-
-
33
-
-
0008025298
-
Convergence properties of free energy calculations: cyclodextrin complexes as a case study
-
Mark A.E., van Helden S.P., Smith P.E., Janssen L.H.M., and van Gunsteren W.F. Convergence properties of free energy calculations: cyclodextrin complexes as a case study. J. Am. Chem. Soc. 116 (1994) 6293-6302
-
(1994)
J. Am. Chem. Soc.
, vol.116
, pp. 6293-6302
-
-
Mark, A.E.1
van Helden, S.P.2
Smith, P.E.3
Janssen, L.H.M.4
van Gunsteren, W.F.5
-
34
-
-
0004016501
-
Comparison of simple potential functions for simulating liquid water
-
Jorgensen W.L., Chandrasekhar J., Madura J.D., Impey R.W., and Klein M.L. Comparison of simple potential functions for simulating liquid water. J. Chem. Phys. 79 (1983) 926-935
-
(1983)
J. Chem. Phys.
, vol.79
, pp. 926-935
-
-
Jorgensen, W.L.1
Chandrasekhar, J.2
Madura, J.D.3
Impey, R.W.4
Klein, M.L.5
-
35
-
-
0027642798
-
Molecular dynamics simulation of the stability of a 22 residue alpha-helix in water and 30% trifluoroethanol
-
van Buuren A.R., and Berendsen H.J.C. Molecular dynamics simulation of the stability of a 22 residue alpha-helix in water and 30% trifluoroethanol. Biopolymers 33 (1993) 1159-1166
-
(1993)
Biopolymers
, vol.33
, pp. 1159-1166
-
-
van Buuren, A.R.1
Berendsen, H.J.C.2
-
36
-
-
0000454818
-
A force field for liquid dimethyl sulfoxide and liquid properties of liquid dimethyl sulfoxide calculated using molecular dynamics simulation
-
Liu H., Müller-Plathe F., and van Gunsteren W.F. A force field for liquid dimethyl sulfoxide and liquid properties of liquid dimethyl sulfoxide calculated using molecular dynamics simulation. J. Am. Chem. Soc. 117 (1995) 4363-4366
-
(1995)
J. Am. Chem. Soc.
, vol.117
, pp. 4363-4366
-
-
Liu, H.1
Müller-Plathe, F.2
van Gunsteren, W.F.3
-
38
-
-
84986440341
-
SETTLE: an analytical version of the SHAKE and RATTLE algorithms for rigid water models
-
Miyamoto S., and Kollman P.A. SETTLE: an analytical version of the SHAKE and RATTLE algorithms for rigid water models. J. Comp. Chem. 13 (1992) 952-962
-
(1992)
J. Comp. Chem.
, vol.13
, pp. 952-962
-
-
Miyamoto, S.1
Kollman, P.A.2
-
41
-
-
33646475823
-
-
D. van der Spoel, E. Lindahl, B. Hess, A.R. van Buuren, E. Apol, P.J. Meulenhoff, D.P. Tieleman, A.L.T.M. Sijbers, K.A. Feenstra, R. van Drunen and H.J.C. Berendsen, Gromacs User Manual version 3.2, www.gromacs.org (2004).
-
-
-
-
42
-
-
0020997912
-
Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features
-
Kabsch W., and Sander C. Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features. Biopolymers 22 (1983) 2577-2637
-
(1983)
Biopolymers
, vol.22
, pp. 2577-2637
-
-
Kabsch, W.1
Sander, C.2
-
43
-
-
18144373524
-
2O
-
2O. Phys. Rev. Lett. 94 (2005) 025502
-
(2005)
Phys. Rev. Lett.
, vol.94
, pp. 025502
-
-
Cai, Y.Q.1
Mao, H.-K.2
Chow, P.C.3
Tse, J.S.4
Ma, Y.5
Patchkovskii, S.6
Shu, J.F.7
Struzhkin, V.8
Hemley, R.J.9
Ishii, H.10
Chen, C.C.11
Jarrige, I.12
Chen, C.T.13
Shieh, S.R.14
Huang, E.P.15
Kao, C.C.16
-
45
-
-
4544232962
-
On the hydrogen bond structure of water at different densities
-
Caffarena E.R., and Grigera J.R. On the hydrogen bond structure of water at different densities. Physica, A 342 (2004) 34-39
-
(2004)
Physica, A
, vol.342
, pp. 34-39
-
-
Caffarena, E.R.1
Grigera, J.R.2
|