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Volumn 11, Issue 1, 2010, Pages

Genomic organization of eukaryotic tRNAs

Author keywords

[No Author keywords available]

Indexed keywords

TRANSFER RNA; DNA;

EID: 77951613080     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/1471-2164-11-270     Document Type: Article
Times cited : (71)

References (67)
  • 1
    • 0003604405 scopus 로고
    • Plainview, NY: Cold Spring Harbor Laboratory Press, Eds
    • Gesteland RF, Atkins JF, . Eds The RNA World 1993, Plainview, NY: Cold Spring Harbor Laboratory Press, Eds.
    • (1993) The RNA World
    • Gesteland, R.F.1    Atkins, J.F.2
  • 2
    • 0024474755 scopus 로고
    • How old is the genetic code? Statistical geometry of tRNA provides an answer
    • 10.1126/science.2497522, 2497522
    • Eigen M, Lindemann BF, Tietze M, Winkler-Oswatitsch R, Dress AWM, von Haeseler A. How old is the genetic code? Statistical geometry of tRNA provides an answer. Science 1989, 244:673-679. 10.1126/science.2497522, 2497522.
    • (1989) Science , vol.244 , pp. 673-679
    • Eigen, M.1    Lindemann, B.F.2    Tietze, M.3    Winkler-Oswatitsch, R.4    Dress, A.W.M.5    von Haeseler, A.6
  • 3
    • 0019827720 scopus 로고
    • Transfer-RNA, an early gene?
    • 10.1007/BF01047470, 7266675
    • Eigen M, Winkler-Oswatitsch R. Transfer-RNA, an early gene?. Naturwissenschaften 1981, 68:282-292. 10.1007/BF01047470, 7266675.
    • (1981) Naturwissenschaften , vol.68 , pp. 282-292
    • Eigen, M.1    Winkler-Oswatitsch, R.2
  • 4
    • 0027276319 scopus 로고
    • Transfer RNAs with complementary anticodons: could they reflect early evolution of discriminative genetic code adaptors?
    • 10.1073/pnas.90.10.4723, 46585, 8506325
    • Rodin S, S O, Rodin A. Transfer RNAs with complementary anticodons: could they reflect early evolution of discriminative genetic code adaptors?. Proc Natl Acad Sci USA 1993, 90:4723-4727. 10.1073/pnas.90.10.4723, 46585, 8506325.
    • (1993) Proc Natl Acad Sci USA , vol.90 , pp. 4723-4727
    • Rodin, S.1    S, O.2    Rodin, A.3
  • 5
    • 0345276409 scopus 로고    scopus 로고
    • The origin of the tRNA molecule: implications for the origin of protein synthesis
    • 10.1016/j.jtbi.2003.07.001, 14637058
    • Di Giulio M. The origin of the tRNA molecule: implications for the origin of protein synthesis. J Theor Biol 2004, 226:89-93. 10.1016/j.jtbi.2003.07.001, 14637058.
    • (2004) J Theor Biol , vol.226 , pp. 89-93
    • Di Giulio, M.1
  • 6
    • 45449093194 scopus 로고    scopus 로고
    • Sequence evidence in the archaeal genomes that tRNAs emerged through the combination of ancestral genes as 5' and 3' tRNA halves
    • 10.1371/journal.pone.0001622, 2237900, 18286179
    • Fujishima K, Sugahara J, Tomita M, Kanai A. Sequence evidence in the archaeal genomes that tRNAs emerged through the combination of ancestral genes as 5' and 3' tRNA halves. PLoS One 2008, 3:e1622. 10.1371/journal.pone.0001622, 2237900, 18286179.
    • (2008) PLoS One , vol.3
    • Fujishima, K.1    Sugahara, J.2    Tomita, M.3    Kanai, A.4
  • 7
    • 72449195699 scopus 로고    scopus 로고
    • Formal Proof that the Split Genes of tRNAs of Nanoarchaeum equitans Are an Ancestral Character
    • 10.1007/s00239-009-9280-z, 19760446
    • Di Giulio M. Formal Proof that the Split Genes of tRNAs of Nanoarchaeum equitans Are an Ancestral Character. J Mol Evol 2009, 69:505-511. 10.1007/s00239-009-9280-z, 19760446.
    • (2009) J Mol Evol , vol.69 , pp. 505-511
    • Di Giulio, M.1
  • 8
    • 56049119367 scopus 로고    scopus 로고
    • Stress-induced tRNA-derived RNAs: a novel class of small RNAs in the primitive eukaryote Giardia lamblia
    • 10.1093/nar/gkn596, 2577346, 18820301
    • Li Y, Luo J, Zhou H, Liao JY, Ma LM, Chen YQ, Qu LH. Stress-induced tRNA-derived RNAs: a novel class of small RNAs in the primitive eukaryote Giardia lamblia. Nucleic Acids Res 2008, 36:6048-6055. 10.1093/nar/gkn596, 2577346, 18820301.
    • (2008) Nucleic Acids Res , vol.36 , pp. 6048-6055
    • Li, Y.1    Luo, J.2    Zhou, H.3    Liao, J.Y.4    Ma, L.M.5    Chen, Y.Q.6    Qu, L.H.7
  • 9
    • 34547407396 scopus 로고    scopus 로고
    • Retrograde nuclear accumulation of cytoplasmic tRNA in rat hepatoma cells in response to amino acid deprivation
    • 10.1073/pnas.0700765104, 1868590, 17502605
    • Shaheen HH, Horetsky RL, Kimball SR, Murthi A, Jefferson LS, Hopper AK. Retrograde nuclear accumulation of cytoplasmic tRNA in rat hepatoma cells in response to amino acid deprivation. Proc Natl Acad Sci USA 2007, 104(21):8845-8850. 10.1073/pnas.0700765104, 1868590, 17502605.
    • (2007) Proc Natl Acad Sci USA , vol.104 , Issue.21 , pp. 8845-8850
    • Shaheen, H.H.1    Horetsky, R.L.2    Kimball, S.R.3    Murthi, A.4    Jefferson, L.S.5    Hopper, A.K.6
  • 10
    • 43349083066 scopus 로고    scopus 로고
    • Small ncRNA transcriptome analysis from Aspergillus fumigatus suggests a novel mechanism for regulation of protein-synthesis
    • 10.1093/nar/gkn123, 2377427, 18346967
    • Jöchl C, Rederstorff M, Hertel J, Stadler PF, Hofacker IL, Schrettl M, Haas H, Hüttenhofer A. Small ncRNA transcriptome analysis from Aspergillus fumigatus suggests a novel mechanism for regulation of protein-synthesis. Nucleic Acids Res 2008, 36:2677-2689. 10.1093/nar/gkn123, 2377427, 18346967.
    • (2008) Nucleic Acids Res , vol.36 , pp. 2677-2689
    • Jöchl, C.1    Rederstorff, M.2    Hertel, J.3    Stadler, P.F.4    Hofacker, I.L.5    Schrettl, M.6    Haas, H.7    Hüttenhofer, A.8
  • 11
    • 71549169628 scopus 로고    scopus 로고
    • Filtering of deep sequencing data reveals the existence of abundant Dicer-dependent small RNAs derived from tRNAs
    • 10.1261/rna.1738409, 2779667, 19850906
    • Cole C, Sobala A, Lu C, Thatcher SR, Bowman A, Brown JW, Green PJ, Barton GJ, Hutvagner G. Filtering of deep sequencing data reveals the existence of abundant Dicer-dependent small RNAs derived from tRNAs. RNA 2009, 15:2147-2160. 10.1261/rna.1738409, 2779667, 19850906.
    • (2009) RNA , vol.15 , pp. 2147-2160
    • Cole, C.1    Sobala, A.2    Lu, C.3    Thatcher, S.R.4    Bowman, A.5    Brown, J.W.6    Green, P.J.7    Barton, G.J.8    Hutvagner, G.9
  • 12
    • 72749089855 scopus 로고    scopus 로고
    • A novel class of small RNAs: tRNA-derived RNA fragments (tRFs)
    • 10.1101/gad.1837609, 2779758, 19933153
    • Lee YS, Shibata Y, Malhotra A, Dutta A. A novel class of small RNAs: tRNA-derived RNA fragments (tRFs). Genes Dev 2009, 23:2639-2649. 10.1101/gad.1837609, 2779758, 19933153.
    • (2009) Genes Dev , vol.23 , pp. 2639-2649
    • Lee, Y.S.1    Shibata, Y.2    Malhotra, A.3    Dutta, A.4
  • 14
    • 0035046796 scopus 로고    scopus 로고
    • Neuronal BC1 RNA structure: evolutionary conversion of a tRNA(Ala) domain into an extended stem-loop structure
    • 10.1017/S1355838201002485, 1370124, 11350036
    • Rozhdestvensky TS, Kopylov AM, Brosius J, Hüttenhofer A. Neuronal BC1 RNA structure: evolutionary conversion of a tRNA(Ala) domain into an extended stem-loop structure. RNA 2001, 7:722-730. 10.1017/S1355838201002485, 1370124, 11350036.
    • (2001) RNA , vol.7 , pp. 722-730
    • Rozhdestvensky, T.S.1    Kopylov, A.M.2    Brosius, J.3    Hüttenhofer, A.4
  • 16
    • 33745620751 scopus 로고    scopus 로고
    • Functional noncoding sequences derived from SINEs in the mammalian genome
    • 10.1101/gr.5255506, 1484453, 16717141
    • Nishihara H, Smit A, F ON. Functional noncoding sequences derived from SINEs in the mammalian genome. Genome Res 2006, 16:864-874. 10.1101/gr.5255506, 1484453, 16717141.
    • (2006) Genome Res , vol.16 , pp. 864-874
    • Nishihara, H.1    Smit, A.2    F, O.N.3
  • 17
    • 2942571454 scopus 로고    scopus 로고
    • Evolution of tRNA-like sequences and genome variability
    • 10.1016/j.gene.2004.03.005, 15194190
    • Frenkel FE, Chaley MB, Korotkov EV, Skryabin KG. Evolution of tRNA-like sequences and genome variability. Gene 2004, 335:57-71. 10.1016/j.gene.2004.03.005, 15194190.
    • (2004) Gene , vol.335 , pp. 57-71
    • Frenkel, F.E.1    Chaley, M.B.2    Korotkov, E.V.3    Skryabin, K.G.4
  • 18
    • 33646886152 scopus 로고    scopus 로고
    • Archaeology and evolution of transfer RNA genes in the Escherichia coli genome
    • 10.1261/rna.2272306, 1464854, 16618964
    • Withers M, Wernisch L, dos Reis M. Archaeology and evolution of transfer RNA genes in the Escherichia coli genome. RNA 2006, 12:933-942. 10.1261/rna.2272306, 1464854, 16618964.
    • (2006) RNA , vol.12 , pp. 933-942
    • Withers, M.1    Wernisch, L.2    dos Reis, M.3
  • 20
    • 0142075820 scopus 로고    scopus 로고
    • The evolution of tRNA-Leu genes in animal mitochondrial genomes
    • 10.1007/s00239-003-2494-6, 14708576
    • Higgs PG, Jameson D, Jow H, Rattray M. The evolution of tRNA-Leu genes in animal mitochondrial genomes. J Mol Evol 2003, 435-445. 10.1007/s00239-003-2494-6, 14708576.
    • (2003) J Mol Evol , pp. 435-445
    • Higgs, P.G.1    Jameson, D.2    Jow, H.3    Rattray, M.4
  • 21
    • 33845635732 scopus 로고    scopus 로고
    • Diversity of tRNA genes in eukaryotes
    • 10.1093/nar/gkl725, 1693877, 17088292
    • Goodenbour JM, Pan T. Diversity of tRNA genes in eukaryotes. Nucleic Acids Res 2006, 34:6137-6146. 10.1093/nar/gkl725, 1693877, 17088292.
    • (2006) Nucleic Acids Res , vol.34 , pp. 6137-6146
    • Goodenbour, J.M.1    Pan, T.2
  • 22
    • 0036792830 scopus 로고    scopus 로고
    • TRNomics: analysis of tRNA genes from 50 genomes of Eukarya, Archaea, and Bacteria reveals anticodon-sparing strategies and domain-specific features
    • 10.1017/S1355838202022021, 1370332, 12403461
    • Marck C, Grosjean H. tRNomics: analysis of tRNA genes from 50 genomes of Eukarya, Archaea, and Bacteria reveals anticodon-sparing strategies and domain-specific features. RNA 2002, 8:1189-1232. 10.1017/S1355838202022021, 1370332, 12403461.
    • (2002) RNA , vol.8 , pp. 1189-1232
    • Marck, C.1    Grosjean, H.2
  • 23
    • 33645895581 scopus 로고    scopus 로고
    • The RNA polymerase III-dependent family of genes in hemiascomycetes: comparative RNomics, decoding strategies, transcription and evolutionary implications
    • 10.1093/nar/gkl085, 1447645, 16600899
    • Marck C, Kachouri-Lafond R, Lafontaine I, Westhof E, Dujon B, Grosjean H. The RNA polymerase III-dependent family of genes in hemiascomycetes: comparative RNomics, decoding strategies, transcription and evolutionary implications. Nucleic Acids Res 2006, 34:1816-1835. 10.1093/nar/gkl085, 1447645, 16600899.
    • (2006) Nucleic Acids Res , vol.34 , pp. 1816-1835
    • Marck, C.1    Kachouri-Lafond, R.2    Lafontaine, I.3    Westhof, E.4    Dujon, B.5    Grosjean, H.6
  • 24
    • 70349921337 scopus 로고    scopus 로고
    • TRNA genes in eukaryotic genome organization and reorganization
    • McFarlane RJ, Whitehall SK. tRNA genes in eukaryotic genome organization and reorganization. Cell Cycle 2009, 8:3102-3106.
    • (2009) Cell Cycle , vol.8 , pp. 3102-3106
    • McFarlane, R.J.1    Whitehall, S.K.2
  • 25
    • 65449116505 scopus 로고    scopus 로고
    • Chromatin-based transcriptional punctuation
    • 10.1101/gad.1806409, 19417102
    • Talbert PB, Henikoff S. Chromatin-based transcriptional punctuation. Genes Dev 2009, 23:1037-1041. 10.1101/gad.1806409, 19417102.
    • (2009) Genes Dev , vol.23 , pp. 1037-1041
    • Talbert, P.B.1    Henikoff, S.2
  • 26
    • 77649234374 scopus 로고    scopus 로고
    • Fragile genomic sites are associated with origins of replication
    • 10.1093/gbe/evp034, 2817429, 20333204
    • Di Rienzi S, Collingwood D, Raghuraman MK, Brewer B. Fragile genomic sites are associated with origins of replication. Genome Biol Evol 2009, 2009:350-363. 10.1093/gbe/evp034, 2817429, 20333204.
    • (2009) Genome Biol Evol , vol.2009 , pp. 350-363
    • Di Rienzi, S.1    Collingwood, D.2    Raghuraman, M.K.3    Brewer, B.4
  • 27
    • 34047094441 scopus 로고    scopus 로고
    • Replication fork barriers: pausing for a break or stalling for time?
    • Labib K, Hodgson B. Replication fork barriers: pausing for a break or stalling for time?. Embo reports 2007, 8:8492-8501.
    • (2007) Embo reports , vol.8 , pp. 8492-8501
    • Labib, K.1    Hodgson, B.2
  • 28
    • 30944462801 scopus 로고    scopus 로고
    • Cycles of chromosome instability are associated with a fragile site and are increased by defects in DNA replication and checkpoint controls in yeast
    • Admire A, Shanks L, Danz N, Wang M, Weier U, Stevens W, Hunt E, Weinert T. Cycles of chromosome instability are associated with a fragile site and are increased by defects in DNA replication and checkpoint controls in yeast. Genes & Dev 2006, 20:159-173.
    • (2006) Genes & Dev , vol.20 , pp. 159-173
    • Admire, A.1    Shanks, L.2    Danz, N.3    Wang, M.4    Weier, U.5    Stevens, W.6    Hunt, E.7    Weinert, T.8
  • 29
    • 0029740114 scopus 로고    scopus 로고
    • DNA Replication Fork Pause Sites Dependent on Transcription
    • 10.1126/science.272.5264.1030, 8638128
    • Deshpande AM, Newlon CS. DNA Replication Fork Pause Sites Dependent on Transcription. Science 1996, 272:1030-1033. 10.1126/science.272.5264.1030, 8638128.
    • (1996) Science , vol.272 , pp. 1030-1033
    • Deshpande, A.M.1    Newlon, C.S.2
  • 30
    • 0348047594 scopus 로고    scopus 로고
    • The Saccharomyces cerevisiae helicase Rrm3p facilitates replication past nonhistone protein-DNA complexes
    • 10.1016/S1097-2765(03)00456-8, 14690605
    • Ivessa AS, Lenzmeier BA, Bessler JB, Goudsouzian LK, Schnakenberg SL, Zakian VA. The Saccharomyces cerevisiae helicase Rrm3p facilitates replication past nonhistone protein-DNA complexes. Mol Cell 2003, 12:1525-1536. 10.1016/S1097-2765(03)00456-8, 14690605.
    • (2003) Mol Cell , vol.12 , pp. 1525-1536
    • Ivessa, A.S.1    Lenzmeier, B.A.2    Bessler, J.B.3    Goudsouzian, L.K.4    Schnakenberg, S.L.5    Zakian, V.A.6
  • 31
    • 56449099760 scopus 로고    scopus 로고
    • Comprehensive analysis of archaeal tRNA genes reveals rapid increase of tRNA introns in the order thermoproteales
    • 10.1093/molbev/msn216, 18832079
    • Sugahara J, Kikuta K, Fujishima K, Yachie N, Tomita M, Kanai A. Comprehensive analysis of archaeal tRNA genes reveals rapid increase of tRNA introns in the order thermoproteales. Mol Biol Evol 2008, 25:2709-2716. 10.1093/molbev/msn216, 18832079.
    • (2008) Mol Biol Evol , vol.25 , pp. 2709-2716
    • Sugahara, J.1    Kikuta, K.2    Fujishima, K.3    Yachie, N.4    Tomita, M.5    Kanai, A.6
  • 32
    • 38349180547 scopus 로고    scopus 로고
    • Patterns of evolution in the unique tRNA gene arrays of the genus Entamoeba
    • 10.1093/molbev/msm238, 2652664, 17974548
    • Tawari B, Ali IK, Scott C, Quail MA, Berriman M, Hall N, Clark CG. Patterns of evolution in the unique tRNA gene arrays of the genus Entamoeba. Mol Biol Evol 2008, 25:187-198. 10.1093/molbev/msm238, 2652664, 17974548.
    • (2008) Mol Biol Evol , vol.25 , pp. 187-198
    • Tawari, B.1    Ali, I.K.2    Scott, C.3    Quail, M.A.4    Berriman, M.5    Hall, N.6    Clark, C.G.7
  • 33
    • 31144462824 scopus 로고    scopus 로고
    • Unique organisation of tRNA genes in Entamoeba histolytica
    • 10.1016/j.molbiopara.2005.10.013, 16307803
    • Clark CG, Ali IK, Zaki M, Loftus BJ, Hall N. Unique organisation of tRNA genes in Entamoeba histolytica. Mol Biochem Parasitol 2006, 146:24-29. 10.1016/j.molbiopara.2005.10.013, 16307803.
    • (2006) Mol Biochem Parasitol , vol.146 , pp. 24-29
    • Clark, C.G.1    Ali, I.K.2    Zaki, M.3    Loftus, B.J.4    Hall, N.5
  • 34
    • 34347355440 scopus 로고    scopus 로고
    • MiRNAs control gene expression in the single-cell alga Chlamydomonas reinhardtii
    • 10.1038/nature05903, 17538623
    • Molnár A, Schwach F, Studholme DJ, Thuenemann EC, Baulcombe DC. miRNAs control gene expression in the single-cell alga Chlamydomonas reinhardtii. Nature 2007, 447:1126-1129. 10.1038/nature05903, 17538623.
    • (2007) Nature , vol.447 , pp. 1126-1129
    • Molnár, A.1    Schwach, F.2    Studholme, D.J.3    Thuenemann, E.C.4    Baulcombe, D.C.5
  • 35
    • 34249093687 scopus 로고    scopus 로고
    • A complex system of small RNAs in the unicellular green alga Chlamydomonas reinhardtii
    • 10.1101/gad.1543507, 1865491, 17470535
    • Zhao T, Li G, Mi S, Li S, Hannon G, Wang X, Qi Y. A complex system of small RNAs in the unicellular green alga Chlamydomonas reinhardtii. Genes Dev 2007, 21:1190-1203. 10.1101/gad.1543507, 1865491, 17470535.
    • (2007) Genes Dev , vol.21 , pp. 1190-1203
    • Zhao, T.1    Li, G.2    Mi, S.3    Li, S.4    Hannon, G.5    Wang, X.6    Qi, Y.7
  • 36
    • 0030854739 scopus 로고    scopus 로고
    • TRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence
    • 10.1093/nar/25.5.955, 146525, 9023104
    • Lowe TM, Eddy SR. tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Res 1997, 25:955-964. 10.1093/nar/25.5.955, 146525, 9023104.
    • (1997) Nucleic Acids Res , vol.25 , pp. 955-964
    • Lowe, T.M.1    Eddy, S.R.2
  • 37
    • 77954315909 scopus 로고    scopus 로고
    • Supplementary Data in Machine-Readable Form
    • Supplementary Data in Machine-Readable Form. 2009, , http://www.bioinf.uni-leipzig.de/Publications/SUPPLEMENTS/09-050
    • (2009)
  • 38
    • 70849114722 scopus 로고    scopus 로고
    • Deletional Bias across the Three Domains of Life
    • 10.1093/gbe/evp016, 2817411, 20333185
    • Kuo C, Ochman H. Deletional Bias across the Three Domains of Life. Genome Biol Evol 2009, 2009:145-52. 10.1093/gbe/evp016, 2817411, 20333185.
    • (2009) Genome Biol Evol , vol.2009 , pp. 145-152
    • Kuo, C.1    Ochman, H.2
  • 39
    • 8744310123 scopus 로고    scopus 로고
    • Codon usage bias from tRNA's point of view: Redundancy, specialization, and efficient decoding for translation optimization
    • Rocha EPC. Codon usage bias from tRNA's point of view: Redundancy, specialization, and efficient decoding for translation optimization. Genomes Res 2004, 14:2279-2286.
    • (2004) Genomes Res , vol.14 , pp. 2279-2286
    • Rocha, E.P.C.1
  • 40
    • 54149105223 scopus 로고    scopus 로고
    • Coevolution of codon usage and tRNA genes leads to alternative stable states of biased codon usage
    • 10.1093/molbev/msn173, 18687657
    • Higgs P, Ran W. Coevolution of codon usage and tRNA genes leads to alternative stable states of biased codon usage. Mol Biol Evol 2008, 25:2279-2291. 10.1093/molbev/msn173, 18687657.
    • (2008) Mol Biol Evol , vol.25 , pp. 2279-2291
    • Higgs, P.1    Ran, W.2
  • 41
    • 34548132386 scopus 로고    scopus 로고
    • Nature of selective constraints on synonymous codon usage of rice differs in GC-poor and GC-rich genes
    • 10.1016/j.gene.2007.05.027, 17629420
    • Mukhopadhyay P, Basak S, Ghosh TC. Nature of selective constraints on synonymous codon usage of rice differs in GC-poor and GC-rich genes. Gene 2007, 400:71-81. 10.1016/j.gene.2007.05.027, 17629420.
    • (2007) Gene , vol.400 , pp. 71-81
    • Mukhopadhyay, P.1    Basak, S.2    Ghosh, T.C.3
  • 42
    • 38049173078 scopus 로고    scopus 로고
    • Genomic drift and copy number variation of sensory receptor genes in humans
    • 10.1073/pnas.0709956104, 2154446, 18077390
    • Nozawa M, Kawahara Y, Nei M. Genomic drift and copy number variation of sensory receptor genes in humans. Proc Natl Acad Sci USA 2007, 104:20421-20426. 10.1073/pnas.0709956104, 2154446, 18077390.
    • (2007) Proc Natl Acad Sci USA , vol.104 , pp. 20421-20426
    • Nozawa, M.1    Kawahara, Y.2    Nei, M.3
  • 44
    • 37549005579 scopus 로고    scopus 로고
    • Protein interactions involved in tRNA gene-specific integration of Dictyostelium discoideum non-long terminal repeat retrotransposon TRE5-A
    • 10.1128/MCB.01173-07, 2169388, 17923679
    • Chung T, Siol O, Dingermann T, Winckler T. Protein interactions involved in tRNA gene-specific integration of Dictyostelium discoideum non-long terminal repeat retrotransposon TRE5-A. Mol Cell Biol 2007, 27:8492-8501. 10.1128/MCB.01173-07, 2169388, 17923679.
    • (2007) Mol Cell Biol , vol.27 , pp. 8492-8501
    • Chung, T.1    Siol, O.2    Dingermann, T.3    Winckler, T.4
  • 45
    • 67149106149 scopus 로고    scopus 로고
    • Additions, losses, and rearrangements on the evolutionary route from a reconstructed ancestor to the modern Saccharomyces cerevisiae genome
    • 10.1371/journal.pgen.1000485, 2675101, 19436716
    • Gordon J, Byrne K, Wolfe K. Additions, losses, and rearrangements on the evolutionary route from a reconstructed ancestor to the modern Saccharomyces cerevisiae genome. PLoS Genet 2009, 5:e1000485. 10.1371/journal.pgen.1000485, 2675101, 19436716.
    • (2009) PLoS Genet , vol.5
    • Gordon, J.1    Byrne, K.2    Wolfe, K.3
  • 46
    • 70449589829 scopus 로고    scopus 로고
    • Computer simulation of tRNA evolution
    • Wei F, Li S, Ma HR. Computer simulation of tRNA evolution. J Phys A Math Theor 2009, 42:345101.
    • (2009) J Phys A Math Theor , vol.42 , pp. 345101
    • Wei, F.1    Li, S.2    Ma, H.R.3
  • 47
    • 38549117942 scopus 로고    scopus 로고
    • The phylogenetic relationships of Caenorhabditis and other rhabditids
    • C elegans Research Communit T, Wormbook, Doi/10.1895/wormbook.1.11.1
    • Kiontke K, Fitch DHA. The phylogenetic relationships of Caenorhabditis and other rhabditids. Wormbook 2005, C elegans Research Communit T, Wormbook, Doi/10.1895/wormbook.1.11.1., http://www.wormbook.org
    • (2005) Wormbook
    • Kiontke, K.1    Fitch, D.H.A.2
  • 48
    • 0347364639 scopus 로고    scopus 로고
    • Changing identities: tRNA duplication and remolding within animal mitochondrial genomes
    • Rawlings TA, Collins TM, Bieler R. Changing identities: tRNA duplication and remolding within animal mitochondrial genomes. Proc Acad Natl USA 2003, 100:15700-15705.
    • (2003) Proc Acad Natl USA , vol.100 , pp. 15700-15705
    • Rawlings, T.A.1    Collins, T.M.2    Bieler, R.3
  • 49
    • 38549180414 scopus 로고    scopus 로고
    • Modern genomes with retro-look: retrotransposed elements, retroposition and the origin of new genes
    • full_text, 18753792
    • Volff JN, Brosius J. Modern genomes with retro-look: retrotransposed elements, retroposition and the origin of new genes. Genome Dyn 2007, 3:175-190. full_text, 18753792.
    • (2007) Genome Dyn , vol.3 , pp. 175-190
    • Volff, J.N.1    Brosius, J.2
  • 50
    • 0024284965 scopus 로고
    • A simple structural feature is a major determinant of the identity of a transfer RNA
    • 10.1038/333140a0, 3285220
    • Hou YM, Schimmel P. A simple structural feature is a major determinant of the identity of a transfer RNA. Nature 1988, 333:140-145. 10.1038/333140a0, 3285220.
    • (1988) Nature , vol.333 , pp. 140-145
    • Hou, Y.M.1    Schimmel, P.2
  • 51
    • 0024284958 scopus 로고
    • Transfer RNA: the second genetic code
    • 10.1038/333117a0, 3367984
    • de Duve C. Transfer RNA: the second genetic code. Nature 1988, 333:117-118. 10.1038/333117a0, 3367984.
    • (1988) Nature , vol.333 , pp. 117-118
    • de Duve, C.1
  • 52
    • 0027436686 scopus 로고
    • An operational RNA code for amino acids and possible relationship to genetic code
    • 10.1073/pnas.90.19.8763, 47440, 7692438
    • Schimmel P, Giegé R, Moras D, Yokoyama S. An operational RNA code for amino acids and possible relationship to genetic code. Proc Natl Acad Sci USA 1993, 90:8763-8768. 10.1073/pnas.90.19.8763, 47440, 7692438.
    • (1993) Proc Natl Acad Sci USA , vol.90 , pp. 8763-8768
    • Schimmel, P.1    Giegé, R.2    Moras, D.3    Yokoyama, S.4
  • 53
    • 33845328427 scopus 로고    scopus 로고
    • Emergence of the universal genetic code imprinted in an RNA record
    • 10.1073/pnas.0608762103, 1838712, 17110438
    • Hohn MJ, Park HS, O'Donoghue P, Schnitzbauer M, Söll D. Emergence of the universal genetic code imprinted in an RNA record. Proc Natl Acad Sci USA 2006, 103:18095-18100. 10.1073/pnas.0608762103, 1838712, 17110438.
    • (2006) Proc Natl Acad Sci USA , vol.103 , pp. 18095-18100
    • Hohn, M.J.1    Park, H.S.2    O'Donoghue, P.3    Schnitzbauer, M.4    Söll, D.5
  • 54
    • 70349813956 scopus 로고    scopus 로고
    • Tertiary structure checkpoint at anticodon loop modification in tRNA functional maturation
    • 10.1038/nsmb.1653, 19749755
    • Goto-Ito S, Ito T, Kuratani M, Bessho Y, Yokoyama S. Tertiary structure checkpoint at anticodon loop modification in tRNA functional maturation. Nat Struct Mol Biol 2009, 16:1109-1115. 10.1038/nsmb.1653, 19749755.
    • (2009) Nat Struct Mol Biol , vol.16 , pp. 1109-1115
    • Goto-Ito, S.1    Ito, T.2    Kuratani, M.3    Bessho, Y.4    Yokoyama, S.5
  • 55
    • 71549152520 scopus 로고    scopus 로고
    • Diversity and similarity in the tRNA world: overall view and case study on malaria-related tRNAs
    • 10.1016/j.febslet.2009.11.050, 19931530
    • Pütz J, Giegé R, Florentz C. Diversity and similarity in the tRNA world: overall view and case study on malaria-related tRNAs. FEBS Lett 2010, 584:350-358. 10.1016/j.febslet.2009.11.050, 19931530.
    • (2010) FEBS Lett , vol.584 , pp. 350-358
    • Pütz, J.1    Giegé, R.2    Florentz, C.3
  • 57
    • 0027500536 scopus 로고
    • Editing of transfer RNAs in Acanthamoeba castellanii mitochondria
    • 10.1126/science.8430334, 8430334
    • Lonergan KM, Gray MV. Editing of transfer RNAs in Acanthamoeba castellanii mitochondria. Science 1993, 259:812-816. 10.1126/science.8430334, 8430334.
    • (1993) Science , vol.259 , pp. 812-816
    • Lonergan, K.M.1    Gray, M.V.2
  • 58
    • 0141621017 scopus 로고    scopus 로고
    • RNA editing of larch mitochondrial tRNA(His) precursors is a prerequisite for processing
    • 10.1093/nar/24.16.3229, 146066, 8774905
    • Marechal-Drouard L, Kumar R, Remacle C, Small I. RNA editing of larch mitochondrial tRNA(His) precursors is a prerequisite for processing. Nucleic Acids Res 1996, 24:3229-3234. 10.1093/nar/24.16.3229, 146066, 8774905.
    • (1996) Nucleic Acids Res , vol.24 , pp. 3229-3234
    • Marechal-Drouard, L.1    Kumar, R.2    Remacle, C.3    Small, I.4
  • 59
    • 0037029150 scopus 로고    scopus 로고
    • Role of editing in plant mitochondrial transfer RNAs
    • 10.1016/S0378-1119(01)00817-4, 11943456
    • Fey J, Weil J, Tomita K, Cosset A, Dietrich A, Small I, Marechal-Drouard L. Role of editing in plant mitochondrial transfer RNAs. Gene 2002, 286:21-24. 10.1016/S0378-1119(01)00817-4, 11943456.
    • (2002) Gene , vol.286 , pp. 21-24
    • Fey, J.1    Weil, J.2    Tomita, K.3    Cosset, A.4    Dietrich, A.5    Small, I.6    Marechal-Drouard, L.7
  • 60
    • 1642488261 scopus 로고    scopus 로고
    • Mitochondrial 3' tRNA editing in the jakobid Seculamonas ecuadoriensis: a novel mechanism and implications for tRNA processing
    • 10.1261/rna.5195504, 1370552, 15037771
    • Leigh J, Lang BF. Mitochondrial 3' tRNA editing in the jakobid Seculamonas ecuadoriensis: a novel mechanism and implications for tRNA processing. RNA 2004, 10:615-621. 10.1261/rna.5195504, 1370552, 15037771.
    • (2004) RNA , vol.10 , pp. 615-621
    • Leigh, J.1    Lang, B.F.2
  • 61
    • 80055091440 scopus 로고    scopus 로고
    • The R Project for Statistical Computing
    • The R Project for Statistical Computing. , http://www.r-project.org/
  • 62
    • 0002386913 scopus 로고
    • On the interpretation of χ2 from contingency tables, and the calculation of P
    • Fisher RA. On the interpretation of χ2 from contingency tables, and the calculation of P. J Royal Stat Soc 1922, 85:87-94.
    • (1922) J Royal Stat Soc , vol.85 , pp. 87-94
    • Fisher, R.A.1
  • 63
    • 33746677466 scopus 로고    scopus 로고
    • BioFuice: Mapping-based data intergation in bioinformatics
    • Leser U, Naumann F, Eckmann B, Third International Workshop, DILS 2006
    • Kirsten T, Rahm E. BioFuice: Mapping-based data intergation in bioinformatics. Data Integration in the Life Sciences, of Lect Notes Comp Sci 2006, 4075:124-135. Leser U, Naumann F, Eckmann B, Third International Workshop, DILS 2006.
    • (2006) Data Integration in the Life Sciences, of Lect Notes Comp Sci , vol.4075 , pp. 124-135
    • Kirsten, T.1    Rahm, E.2
  • 64
    • 0141519279 scopus 로고    scopus 로고
    • OrthoMCL: Identification of Ortholog Groups for Eukaryotic Genomes
    • 10.1101/gr.1224503, 403725, 12952885
    • Li L, Stoeckert CJ, Roos DSR. OrthoMCL: Identification of Ortholog Groups for Eukaryotic Genomes. Genome Res 2003, 13:2178-2189. 10.1101/gr.1224503, 403725, 12952885.
    • (2003) Genome Res , vol.13 , pp. 2178-2189
    • Li, L.1    Stoeckert, C.J.2    Roos, D.S.R.3
  • 65
    • 77954313009 scopus 로고    scopus 로고
    • Proteinortho - Orthology detection tool
    • Lechner M, Steiner L, Prohaska SJ. Proteinortho - Orthology detection tool. 2009, , http://www.bioinf.uni-leipzig.de/Software/proteinortho/
    • (2009)
    • Lechner, M.1    Steiner, L.2    Prohaska, S.J.3
  • 67
    • 1242352089 scopus 로고    scopus 로고
    • Temporal patterns of fruit fly (Drosophila) evolution revealed by mutation clocks
    • 10.1093/molbev/msg236, 12949132
    • Tamura K, Subramanian S, Kumar S. Temporal patterns of fruit fly (Drosophila) evolution revealed by mutation clocks. Mol Biol Evol 2004, 21:36-44. 10.1093/molbev/msg236, 12949132.
    • (2004) Mol Biol Evol , vol.21 , pp. 36-44
    • Tamura, K.1    Subramanian, S.2    Kumar, S.3


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