메뉴 건너뛰기




Volumn 37, Issue SUPPL. 1, 2009, Pages

tRNADB-CE: tRNA gene database curated manually by experts

Author keywords

[No Author keywords available]

Indexed keywords

TRANSFER RNA;

EID: 58149183701     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkn692     Document Type: Article
Times cited : (21)

References (19)
  • 1
    • 0030854739 scopus 로고    scopus 로고
    • tRNAscan-SE: A program for improved detection of transfer RNA genes in genomic sequence
    • Lowe,T.M. and Eddy,S.R. (1997) tRNAscan-SE: A program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Res., 25, 955-964.
    • (1997) Nucleic Acids Res , vol.25 , pp. 955-964
    • Lowe, T.M.1    Eddy, S.R.2
  • 2
    • 13444288185 scopus 로고    scopus 로고
    • Compilation of tRNA sequences and sequences of tRNA genes
    • Sprinzl,M. and Vassilenko,S.K. (2005) Compilation of tRNA sequences and sequences of tRNA genes. Nucleic Acids Res., 33, D139-D140.
    • (2005) Nucleic Acids Res , vol.33
    • Sprinzl, M.1    Vassilenko, S.K.2
  • 4
    • 1242297827 scopus 로고    scopus 로고
    • ARAGORN, a program to detect tRNA genes and tmRNA genes in nucleotide sequences
    • Laslett,D. and Canback,B. (2004) ARAGORN, a program to detect tRNA genes and tmRNA genes in nucleotide sequences. Nucleic Acids Res., 32 11-16.
    • (2004) Nucleic Acids Res , vol.32 , pp. 11-16
    • Laslett, D.1    Canback, B.2
  • 5
    • 58149198614 scopus 로고    scopus 로고
    • tRNAfinder: A software system to find all tRNA genes in the DNA sequence based on the cloverleaf secondary structure
    • Kinouchi,M. and Kurokawa,K. (2006) tRNAfinder: A software system to find all tRNA genes in the DNA sequence based on the cloverleaf secondary structure. J. Comp. Aided Chem., 7, 116-126.
    • (2006) J. Comp. Aided Chem , vol.7 , pp. 116-126
    • Kinouchi, M.1    Kurokawa, K.2
  • 7
    • 0028137054 scopus 로고
    • Self-splicing group I intron in cyanobacterial initiator methionine tRNA: Evidence for lateral transfer of introns in bacteria
    • Biniszkiewicz,D., Cesnavicienel,E. and Shub,D.A. (1994) Self-splicing group I intron in cyanobacterial initiator methionine tRNA: Evidence for lateral transfer of introns in bacteria. EMBO J., 13, 4629-4635.
    • (1994) EMBO J , vol.13 , pp. 4629-4635
    • Biniszkiewicz, D.1    Cesnavicienel, E.2    Shub, D.A.3
  • 8
    • 0030690292 scopus 로고    scopus 로고
    • Origin and evolution of group I introns in cyanobacterial tRNA genes
    • Paquin,B., Kathe,S.D., Nierzwicki-Bauer,S.A. and Shub,D.A. (1997) Origin and evolution of group I introns in cyanobacterial tRNA genes. J. Bacteriol., 179, 6798-6806.
    • (1997) J. Bacteriol , vol.179 , pp. 6798-6806
    • Paquin, B.1    Kathe, S.D.2    Nierzwicki-Bauer, S.A.3    Shub, D.A.4
  • 9
    • 33644853072 scopus 로고    scopus 로고
    • TFAM detects co-evolution of tRNA identity rules with lateral transfer of histidyl-tRNA synthetase
    • Ardell,D.H. and Andersson,S.G.E. (2006) TFAM detects co-evolution of tRNA identity rules with lateral transfer of histidyl-tRNA synthetase. Nucleic Acids Res., 34, 893-904.
    • (2006) Nucleic Acids Res , vol.34 , pp. 893-904
    • Ardell, D.H.1    Andersson, S.G.E.2
  • 10
    • 33845644036 scopus 로고    scopus 로고
    • Differential annotation of tRNA genes with anticodon CAT in bacterial genomes
    • Silva,F.J., Belda,E. and Talens,S.E (2006) Differential annotation of tRNA genes with anticodon CAT in bacterial genomes. Nucleic Acids Res., 34, 6015-6022.
    • (2006) Nucleic Acids Res , vol.34 , pp. 6015-6022
    • Silva, F.J.1    Belda, E.2    Talens, S.E.3
  • 11
    • 33845244847 scopus 로고    scopus 로고
    • SPLITS: A new program for predicting split and intron-containing tRNA genes at the genome level
    • Sugahara,J., Yachie,N., Sekine,Y., Soma,A., Matsui,M., Tomita,M. and Kanai,A. (2006) SPLITS: A new program for predicting split and intron-containing tRNA genes at the genome level. In Silico Biol., 6, 411-418.
    • (2006) In Silico Biol , vol.6 , pp. 411-418
    • Sugahara, J.1    Yachie, N.2    Sekine, Y.3    Soma, A.4    Matsui, M.5    Tomita, M.6    Kanai, A.7
  • 12
    • 34247357415 scopus 로고    scopus 로고
    • In silico screening of archaeal tRNA-encoding genes having multiple introns with bulge-helix-bulge splicing motifs
    • Sugahara,J., Yachie,N., Arakawa,K. and Tomita,M. (2007) In silico screening of archaeal tRNA-encoding genes having multiple introns with bulge-helix-bulge splicing motifs. RNA, 13, 671-681.
    • (2007) RNA , vol.13 , pp. 671-681
    • Sugahara, J.1    Yachie, N.2    Arakawa, K.3    Tomita, M.4
  • 13
    • 13444251251 scopus 로고    scopus 로고
    • Nanoarchaeum equitans creates functional tRNAs from separate genes for their 5′- and 3′-halves
    • Randau,L., Munch,R., Hohn,M.J., Jahn,D. and Soll,D. (2005) Nanoarchaeum equitans creates functional tRNAs from separate genes for their 5′- and 3′-halves. Nature, 433, 537-541.
    • (2005) Nature , vol.433 , pp. 537-541
    • Randau, L.1    Munch, R.2    Hohn, M.J.3    Jahn, D.4    Soll, D.5
  • 15
    • 33646569088 scopus 로고    scopus 로고
    • Novel phylogenetic studies of genomic sequence fragments derived from uncultured microbe mixtures in environmental and clinical samples
    • Abe,T., Sugawara,H., Kinouchi,M., Kanaya,S. and Ikemura,T. (2005) Novel phylogenetic studies of genomic sequence fragments derived from uncultured microbe mixtures in environmental and clinical samples. DNA Res., 12, 281-290.
    • (2005) DNA Res , vol.12 , pp. 281-290
    • Abe, T.1    Sugawara, H.2    Kinouchi, M.3    Kanaya, S.4    Ikemura, T.5
  • 18
    • 0027968068 scopus 로고
    • CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • Thompson,J.D., Higgins,D.G. and Gibson,T.J. (1994) CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res., 22, 4673-4680.
    • (1994) Nucleic Acids Res , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.