-
1
-
-
0037173615
-
Functional profiling of the Saccharomyces cerevisiae genome
-
Giaever G, Chu AM, Ni L, Connelly C, Riles L, et al.(2002) Functional profiling of the Saccharomyces cerevisiae genome. Nature 418: 387-391.
-
(2002)
Nature
, vol.418
, pp. 387-391
-
-
Giaever, G.1
Chu, A.M.2
Ni, L.3
Connelly, C.4
Riles, L.5
-
2
-
-
0035799707
-
Lethality and centrality in protein networks
-
Jeong H, Mason SP, Barabási AL, Oltvai ZN, (2001) Lethality and centrality in protein networks. Nature 411: 41-42.
-
(2001)
Nature
, vol.411
, pp. 41-42
-
-
Jeong, H.1
Mason, S.P.2
Barabási, A.L.3
Oltvai, Z.N.4
-
3
-
-
33746631391
-
Evolutionary and physiological importance of hub proteins
-
Batada NN, Hurst LD, Tyers M, (2006) Evolutionary and physiological importance of hub proteins. PLoS Comput Biol 2(7): e88.
-
(2006)
PLoS Comput Biol
, vol.2
, Issue.7
-
-
Batada, N.N.1
Hurst, L.D.2
Tyers, M.3
-
4
-
-
26244440771
-
Gene essentiality and the topology of protein interaction networks
-
Coulomb S, Bauer M, Bernard D, Marsolier-Kergoat MC, (2005) Gene essentiality and the topology of protein interaction networks. Proc Biol Sci 272: 1721-1725.
-
(2005)
Proc Biol Sci
, vol.272
, pp. 1721-1725
-
-
Coulomb, S.1
Bauer, M.2
Bernard, D.3
Marsolier-Kergoat, M.C.4
-
5
-
-
26444506831
-
Effect of dataset selection on the topological interpretation of protein interaction networks
-
Hakes L, Robertson DL, Oliver SG, (2005) Effect of dataset selection on the topological interpretation of protein interaction networks. BMC Genomics 6: 131.
-
(2005)
BMC Genomics
, vol.6
, pp. 131
-
-
Hakes, L.1
Robertson, D.L.2
Oliver, S.G.3
-
6
-
-
38049079362
-
Protein-protein interaction networks and biology-what's the connection?
-
Hakes L, Pinney JW, Robertson DL, Lovell SC, (2008) Protein-protein interaction networks and biology-what's the connection? Nat Biotechnol 26: 69-72.
-
(2008)
Nat Biotechnol
, vol.26
, pp. 69-72
-
-
Hakes, L.1
Pinney, J.W.2
Robertson, D.L.3
Lovell, S.C.4
-
7
-
-
15844364199
-
Understanding protein dispensability through machine-learning analysis of high-throughput data
-
Chen Y, Xu D, (2005) Understanding protein dispensability through machine-learning analysis of high-throughput data. Bioinformatics 21: 575-581.
-
(2005)
Bioinformatics
, vol.21
, pp. 575-581
-
-
Chen, Y.1
Xu, D.2
-
8
-
-
33745454509
-
Global analysis of gene function in yeast by quantitative phenotypic profiling
-
Brown JA, Sherlock G, Myers CL, Burrows NM, Deng C, et al.(2006) Global analysis of gene function in yeast by quantitative phenotypic profiling. Mol Syst Biol 2: 2006.0001.
-
(2006)
Mol Syst Biol
, vol.2
-
-
Brown, J.A.1
Sherlock, G.2
Myers, C.L.3
Burrows, N.M.4
Deng, C.5
-
9
-
-
33746753342
-
Exploring the mode-of-action of bioactive compounds by chemical-genetic profiling in yeast
-
Parsons AB, Lopez A, Givoni IE, Williams DE, Gray CA, et al.(2006) Exploring the mode-of-action of bioactive compounds by chemical-genetic profiling in yeast. Cell 126: 611-625.
-
(2006)
Cell
, vol.126
, pp. 611-625
-
-
Parsons, A.B.1
Lopez, A.2
Givoni, I.E.3
Williams, D.E.4
Gray, C.A.5
-
10
-
-
42349100173
-
The chemical genomic portrait of yeast: uncovering a phenotype for all genes
-
Hillenmeyer ME, Fung E, Wildenhain J, Pierce SE, Hoon S, et al.(2008) The chemical genomic portrait of yeast: uncovering a phenotype for all genes. Science 320: 362-365.
-
(2008)
Science
, vol.320
, pp. 362-365
-
-
Hillenmeyer, M.E.1
Fung, E.2
Wildenhain, J.3
Pierce, S.E.4
Hoon, S.5
-
11
-
-
33747817940
-
Toward a molecular understanding of pleiotropy
-
He X, Zhang J, (2006) Toward a molecular understanding of pleiotropy. Genetics 173: 1885-1891.
-
(2006)
Genetics
, vol.173
, pp. 1885-1891
-
-
He, X.1
Zhang, J.2
-
12
-
-
53349117774
-
High-quality binary protein interaction map of the yeast interactome network
-
Yu H, Braun P, Yildirim MA, Lemmens I, Venkatesan K, et al.(2008) High-quality binary protein interaction map of the yeast interactome network. Science 322: 104-110.
-
(2008)
Science
, vol.322
, pp. 104-110
-
-
Yu, H.1
Braun, P.2
Yildirim, M.A.3
Lemmens, I.4
Venkatesan, K.5
-
13
-
-
38649094557
-
Epigenetic regulation and the variability of gene expression
-
Choi JK, Kim YJ, (2008) Epigenetic regulation and the variability of gene expression. Nat Genet 40: 141-147.
-
(2008)
Nat Genet
, vol.40
, pp. 141-147
-
-
Choi, J.K.1
Kim, Y.J.2
-
14
-
-
34250785284
-
Genetic properties influencing the evolvability of gene expression
-
Landry CR, Lemos B, Rifkin SA, Dickinson WJ, Hartl DL, (2007) Genetic properties influencing the evolvability of gene expression. Science 317: 118-121.
-
(2007)
Science
, vol.317
, pp. 118-121
-
-
Landry, C.R.1
Lemos, B.2
Rifkin, S.A.3
Dickinson, W.J.4
Hartl, D.L.5
-
15
-
-
33745583768
-
A genetic signature of interspecies variations in gene expression
-
Tirosh I, Weinberger A, Carmi M, Barkai N, (2006) A genetic signature of interspecies variations in gene expression. Nat Genet 38: 830-834.
-
(2006)
Nat Genet
, vol.38
, pp. 830-834
-
-
Tirosh, I.1
Weinberger, A.2
Carmi, M.3
Barkai, N.4
-
16
-
-
48249103910
-
The effects of protein interactions, gene essentiality and regulatory regions on expression variation
-
Zhou LQ, Ma XT, Sun FZ, (2008) The effects of protein interactions, gene essentiality and regulatory regions on expression variation. BMC Syst Biol 2: 54.
-
(2008)
BMC Syst Biol
, vol.2
, pp. 54
-
-
Zhou, L.Q.1
Ma, X.T.2
Sun, F.Z.3
-
17
-
-
33750177351
-
Centrality in social networks: Conceptual clarification
-
Freeman LC, (1979) Centrality in social networks: Conceptual clarification. Social Networks 1: 215-239.
-
(1979)
Social Networks
, vol.1
, pp. 215-239
-
-
Freeman, L.C.1
-
18
-
-
0032482432
-
Collective dynamics of 'small-world' networks
-
Watts DJ, Strogatz SH, (1998) Collective dynamics of 'small-world' networks. Nature 393: 440-442.
-
(1998)
Nature
, vol.393
, pp. 440-442
-
-
Watts, D.J.1
Strogatz, S.H.2
-
19
-
-
9144242935
-
MIPS: analysis and annotation of proteins from whole genomes
-
Mewes HW, Amid C, Arnold R, Frishman D, Güldener U, et al.(2004) MIPS: analysis and annotation of proteins from whole genomes. Nucl Acid Res 32(Database issue): D41-44.
-
(2004)
Nucl Acid Res
, vol.32
, Issue.Database issue
-
-
Mewes, H.W.1
Amid, C.2
Arnold, R.3
Frishman, D.4
Güldener, U.5
-
20
-
-
0347755535
-
The Database of Interacting Proteins: 2004 update
-
Salwinski L, Miller CS, Smith AJ, Pettit FK, Bowie JU, et al.(2004) The Database of Interacting Proteins: 2004 update. Nucl Acid Res 32(Database issue): D449-451.
-
(2004)
Nucl Acid Res
, vol.32
, Issue.Database issue
-
-
Salwinski, L.1
Miller, C.S.2
Smith, A.J.3
Pettit, F.K.4
Bowie, J.U.5
-
21
-
-
33644873184
-
BioGRID: a general repository for interaction datasets
-
Stark C, Breitkreutz BJ, Reguly T, Boucher L, Breitkreutz A, et al.(2006) BioGRID: a general repository for interaction datasets. Nucl Acids Res 34(Database issue): D535-539.
-
(2006)
Nucl Acids Res
, vol.34
, Issue.Database issue
-
-
Stark, C.1
Breitkreutz, B.J.2
Reguly, T.3
Boucher, L.4
Breitkreutz, A.5
-
22
-
-
34247629588
-
Genetic reconstruction of a functional transcriptional regulatory network
-
Hu Z, Killion PJ, Iyer VR, (2007) Genetic reconstruction of a functional transcriptional regulatory network. Nat Genet 39: 683-687.
-
(2007)
Nat Genet
, vol.39
, pp. 683-687
-
-
Hu, Z.1
Killion, P.J.2
Iyer, V.R.3
-
23
-
-
33847357312
-
A genome-wide analysis in Saccharomyces cerevisiae demonstrates the influence of chromatin modifiers on transcription
-
Steinfeld I, Shamir R, Kupiec M, (2007) A genome-wide analysis in Saccharomyces cerevisiae demonstrates the influence of chromatin modifiers on transcription. Nat Genet 39: 303-309.
-
(2007)
Nat Genet
, vol.39
, pp. 303-309
-
-
Steinfeld, I.1
Shamir, R.2
Kupiec, M.3
-
24
-
-
84875395337
-
-
SGD
-
SGD:http://www.yeastgenome.org.
-
-
-
-
25
-
-
15044358729
-
Promoter occupancy is a major determinant of chromatin remodeling enzyme requirements
-
Dhasarathy A, Kladde MP, (2005) Promoter occupancy is a major determinant of chromatin remodeling enzyme requirements. Mol Cell Biol 25: 2698-2707.
-
(2005)
Mol Cell Biol
, vol.25
, pp. 2698-2707
-
-
Dhasarathy, A.1
Kladde, M.P.2
-
26
-
-
0035076210
-
Histone acetylation at promoters is differentially affected by specific activators and repressors
-
Deckert J, Struhl K, (2001) Histone acetylation at promoters is differentially affected by specific activators and repressors. Mol Cell Biol 21: 2726-2735.
-
(2001)
Mol Cell Biol
, vol.21
, pp. 2726-2735
-
-
Deckert, J.1
Struhl, K.2
-
27
-
-
1542328960
-
Identification and distinct regulation of yeast TATA box-containing genes
-
Basehoar AD, Zanton SJ, Pugh BF, (2004) Identification and distinct regulation of yeast TATA box-containing genes. Cell 116: 699-709.
-
(2004)
Cell
, vol.116
, pp. 699-709
-
-
Basehoar, A.D.1
Zanton, S.J.2
Pugh, B.F.3
-
28
-
-
34247622363
-
The importance of bottlenecks in protein networks: correlation with gene essentiality and expression dynamics
-
Yu H, Kim PM, Sprecher E, Trifonov V, Gerstein M, (2007) The importance of bottlenecks in protein networks: correlation with gene essentiality and expression dynamics. PLoS Comput Biol 3: e59.
-
(2007)
PLoS Comput Biol
, vol.3
-
-
Yu, H.1
Kim, P.M.2
Sprecher, E.3
Trifonov, V.4
Gerstein, M.5
-
29
-
-
0013203966
-
FunSpec: a web-based cluster interpreter for yeast
-
Robinson MD, Grigull J, Mohammad N, Hughes TR, (2002) FunSpec: a web-based cluster interpreter for yeast. BMC Bioinformatics 3: 35.
-
(2002)
BMC Bioinformatics
, vol.3
, pp. 35
-
-
Robinson, M.D.1
Grigull, J.2
Mohammad, N.3
Hughes, T.R.4
-
30
-
-
0033582433
-
Regulation of transition metal transport across the yeast plasma membrane
-
Radisky D, Kaplan J, (1999) Regulation of transition metal transport across the yeast plasma membrane. J Biol Chem 274: 4481-4484.
-
(1999)
J Biol Chem
, vol.274
, pp. 4481-4484
-
-
Radisky, D.1
Kaplan, J.2
-
31
-
-
20444485752
-
Post-transcriptional regulation of the yeast high affinity iron transport system
-
Felice MR, De Domenico I, Li L, Ward DM, Bartok B, et al.(2005) Post-transcriptional regulation of the yeast high affinity iron transport system. J Biol Chem 280: 22181-22190.
-
(2005)
J Biol Chem
, vol.280
, pp. 22181-22190
-
-
Felice, M.R.1
De Domenico, I.2
Li, L.3
Ward, D.M.4
Bartok, B.5
-
32
-
-
0036580169
-
Protein interactions: two methods for assessment of the reliability of high throughput observations
-
Deane CM, Salwinski L, Xenarios I, Eisenberg D, (2002) Protein interactions: two methods for assessment of the reliability of high throughput observations. Mol Cell Proteomics 1: 349-356.
-
(2002)
Mol Cell Proteomics
, vol.1
, pp. 349-356
-
-
Deane, C.M.1
Salwinski, L.2
Xenarios, I.3
Eisenberg, D.4
-
33
-
-
2442480056
-
Assessment of the reliability of protein-protein interactions and protein function prediction
-
Deng MH, Sun FZ, Chen T, (2003) Assessment of the reliability of protein-protein interactions and protein function prediction. Pac Symp Biocomput pp. 197-206.
-
(2003)
Pac Symp Biocomput
, pp. 197-206
-
-
Deng, M.H.1
Sun, F.Z.2
Chen, T.3
-
34
-
-
0002226683
-
Pajek - Program for Large Network Analysis
-
Batagelj V, Mrvar A, (1998) Pajek- Program for Large Network Analysis. Connections 21: 47-57.
-
(1998)
Connections
, vol.21
, pp. 47-57
-
-
Batagelj, V.1
Mrvar, A.2
-
35
-
-
0001884644
-
Individual Comparisons by Ranking Methods
-
Wilcoxon F, (1945) Individual Comparisons by Ranking Methods. Biometrics 1: 80-83.
-
(1945)
Biometrics
, vol.1
, pp. 80-83
-
-
Wilcoxon, F.1
|