Climatic stability and genetic divergence in the tropical insular lizard Anolis krugi, the Puerto Rican 'Lagartijo Jardinero de la Montaña'

Molecular Ecology

Volumn 19, Issue 9, 2010, Pages 1860-1876

  RodrÍguez Robles, Javier A ^a   Jezkova, Tereza ^a   Leal, Manuel ^b  

^a UNIVERSITY OF NEVADA   (United States)

^b DUKE UNIVERSITY   (United States)

Author keywords

Caribbean Sea; Climatic stability; Cytochrome b; Ecological niche models; Evolutionary diversification; Mitochondrial DNA; ND2; Phylogeography; Population genetics; Puerto Rico; Quaternary; West Indies

Indexed keywords

ANIMAL; ARTICLE; BIOLOGICAL MODEL; CLASSIFICATION; CLIMATE; DNA SEQUENCE; ECOSYSTEM; GENETIC VARIABILITY; GENETICS; GEOGRAPHY; HAPLOTYPE; LIZARD; MOLECULAR EVOLUTION; PHYLOGENY; POPULATION GENETICS; PUERTO RICO; SPECIES DIFFERENCE; STATISTICAL MODEL; THEORETICAL MODEL;

ANIMALS; CLIMATE; ECOSYSTEM; EVOLUTION, MOLECULAR; GENETIC VARIATION; GENETICS, POPULATION; GEOGRAPHY; HAPLOTYPES; LIKELIHOOD FUNCTIONS; LIZARDS; MODELS, GENETIC; MODELS, THEORETICAL; PHYLOGENY; PUERTO RICO; SEQUENCE ANALYSIS, DNA; SPECIES SPECIFICITY;

ANOLIS KRUGI; SQUAMATA;

EID: 77951179911     PISSN: 09621083     EISSN: 1365294X     Source Type: Journal    
DOI: 10.1111/j.1365-294X.2010.04616.x     Document Type: Article

References (85)

1. Araújo MB, Nogués-Bravo D, Diniz-Filho JAF, Haywood AM, Valdes PJ, Rahbek C (2008) Quaternary climate changes explain diversity among reptiles and amphibians. Ecography, 31, 8 15.
2. Avise JC (2000) Phylogeography: The History and Formation of Species. Harvard University Press
3. Ballantyne AP, Lavine M, Crowley TJ, Liu J, Baker PB (2005) Meta-analysis of tropical surface temperatures during the Last Glacial Maximum. Geophysical Research Letters, 32, L05712.
4. Bandelt HJ, Forster P, Röhl A (1999) Median-joining networks for inferring intraspecific phylogenies. Molecular Biology and Evolution, 16, 37 48.
5. Barrowclough GF, Zink RM (2009) Funds enough, and time: mtDNA, nuDNA and the discovery of divergence. Molecular Ecology, 18, 2934 2936.
6. Bell CJ, Lundelius EL Jr., Barnosky AD et al. (2004) The Blancan, Irvingtonian, and Rancholabrean mammal ages. In : Late Cretaceous and Cenozoic Mammals of North America: Biostratigraphy and Geochronology (ed. Woodburne MO pp. 232 314. Columbia University Press
7. Bond JE, Sierwald P (2002) Cryptic speciation in the Anadenobolus excisus millipede species complex on the island of Jamaica. Evolution, 56, 1123 1135.
8. Braconnot P, Otto-Bliesner B, Harrison S et al. (2007) Results of PMIP2 coupled simulations of the Mid-Holocene and Last Glacial Maximum - Part 1: experiments and large-scale features. Climate of the Past, 3, 261 277.
9. Brandley MC, de Queiroz K (2004) Phylogeny, ecomorphological evolution, and historical biogeography of the Anolis cristatellus series. Herpetological Monographs, 18, 90 126.
10. Brandley MC, Leaché AD, Warren DL, McGuire JA (2006) Are unequal clade priors problematic for Bayesian phylogenetics? Systematic Biology, 55, 138 146.
11. Brown RP, Hoskisson PA, Welton J-H, Báez M (2006) Geological history and within-island diversity: a debris avalanche and the Tenerife lizard Gallotia galloti. Molecular Ecology, 15, 3631 3640.
12. Browne RA, Collins E, Anderson DJ (2008) Genetic structure of Galápagos populations of the yellow warbler. Condor, 110, 549 553.
13. Carnaval AC, Moritz C (2008) Historical climate modelling predicts patterns of current biodiversity in the Brazilian Atlantic forest. Journal of Biogeography, 35, 1187 1201.
14. Carnaval AC, Hickerson MJ, Haddad CFB, Rodrigues MT, Moritz C (2009) Stability predicts genetic diversity in the Brazilian Atlantic forest hotspot. Science, 323, 785 789.
15. Carstens BC, Richards CL (2007) Integrating coalescent and ecological niche modeling in comparative phylogeography. Evolution, 61, 1439 1454.
16. Cronk QCB (1997) Islands: stability, diversity, conservation. Biodiversity and Conservation, 6, 477 493.
17. Dehghani R, Wanntorp L, Pagani P, Källersjö M, Werdelin L, Veron G (2008) Phylogeography of the white-tailed mongoose (Herpestidae, Carnivora, Mammalia) based on partial sequences of the mtDNA control region. Journal of Zoology (London), 276, 385 393.
18. Dupanloup I, Schneider S, Excoffier L (2002) A simulated annealing approach to define the genetic structure of populations. Molecular Ecology, 11, 2571 2581.
19. Edwards S, Bensch S (2009) Looking forwards or looking backwards in avian phylogeography? A comment on Zink and Barrowclough 2008. Molecular Ecology, 18, 2930 2933.
20. Elith J, Graham CH (2009) Do they? How do they? Why do they differ? On finding reasons for differing performances of species distribution models. Ecography, 32, 66 77.
21. Elith J, Graham CH, Anderson RP et al. (2006) Novel methods improve prediction of species' distributions from occurrence data. Ecography, 29, 129 151.
22. Excoffier L, Smouse PE, Quattro JM (1992) Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data. Genetics, 131, 479 491.
23. Farris JS, Källersjö M, Kluge AG, Bult C (1994) Testing significance of incongruence. Cladistics, 10, 315 319.
24. Forster P, Torroni A, Renfrew C, Röhl A (2001) Phylogenetic star contraction applied to Asian and Papuan mtDNA evolution. Molecular Biology and Evolution, 18, 1864 1881.
25. Funk SM, Fa JE (2006) Phylogeography of the endemic St. Lucia whiptail lizard Cnemidophorus vanzoi: conservation genetics at the species boundary. Conservation Genetics, 7, 651 663.
26. Glor RE, Kolbe JJ, Powell R, Larson A, Losos JB (2003) Phylogenetic analysis of ecological and morphological diversification in Hispaniolan trunk-ground anoles (Anolis cybotes group). Evolution, 57, 2383 2397.
27. Glor RE, Losos JB, Larson A (2005) Out of Cuba: overwater dispersal and speciation among lizards in the Anolis carolinensis subgroup. Molecular Ecology, 14, 2419 2432.
28. Gorman GC, Thomas R, Atkins L (1968) Intra- and interspecific chromosome variation in the lizard Anolis cristatellus and its closest relatives. Breviora, 293, 1 13.
29. Gorman GC, Buth D, Soulé M, Yang SY (1983) The relationships of the Puerto Rican Anolis: electrophoretic and karyotypic studies. In : Advances in Herpetology and Evolutionary Biology: Essays in Honor of Ernest E. Williams (eds Rhodin AGJ, Miyata K pp. 626 642. Museum of Comparative Zoology
30. Graham CH, Moritz C, Williams SE (2006) Habitat history improves prediction of biodiversity in rainforest fauna. Proceedings of the National Academy of Sciences, USA, 103, 632 636.
31. Harrison SP (2000) Palaeoenvironmental data sets and model evaluation in PMIP. In : Paleoclimate Modelling Intercomparison Project (ed. Braconnot P pp. 25 42. Proceedings of the Third PMIP Workshop. World Climate Research Programme-111, ICPO Publications Series No. 34. La Huardière
32. Hasumi H, Emori S (eds 2004) K-1 Coupled GCM (MIROC) Description. K-1 Technical Report No. 1. Center for Climate System Research, University of Tokyo
33. Heatwole H, MacKenzie F (1967) Herpetogeography of Puerto Rico. IV. Paleogeography, faunal similarity and endemism. Evolution, 21, 429 438.
34. Heatwole H, Lin T-H, Villalón E, Muñiz A, Matta A (1969) Some aspects of the thermal ecology of Puerto Rican anoline lizards. Journal of Herpetology, 3, 65 77.
35. Hedges SB (1999) Distribution patterns of amphibians in the West Indies. In : Patterns of Distribution of Amphibians: A Global Perspective (ed. Duellman WE pp. 211 254. Johns Hopkins University Press
36. Hedges SB, Heinicke MP (2007) Molecular phylogeny and biogeography of West Indian frogs of the genus Leptodactylus (Anura, Leptodactylidae). Molecular Phylogenetics and Evolution, 44, 308 314.
37. Helmer EH, Ramos O, López T del M, Quiñones M, Díaz W (2002) Mapping the forest type and land cover of Puerto Rico, a component of the Caribbean biodiversity hotspot. Caribbean Journal of Science, 38, 165 183.
38. Henderson RW, Powell R (2009) Natural History of West Indian Reptiles and Amphibians. University of Florida Press
39. Hewitt GM (1999) Post-glacial re-colonization of European biota. Biological Journal of the Linnean Society, 68, 87 112.
40. Hijmans RJ, Cameron SE, Parra JL, Jones PG, Jarvis A (2005a) Very high resolution interpolated climate surfaces for global land areas. International Journal of Climatology, 25, 1965 1978.
41. Hijmans RJ, Guarino L, Jarvis A et al. (2005b) DIVA-GIS (Version 5.2). http://www.diva-gis.org/.
42. Hilbe JM (2008) Systat 12.2: an overview. American Statistician, 62, 177 178.
43. Huey RB, Deutsch CA, Tewksbury JJ et al. (2009) Why tropical forest lizards are vulnerable to climate warming. Proceedings of the Royal Society, B, 276, 1939 1948.
44. Jackman TR, Irschick DJ, de Queiroz K, Losos JB, Larson A (2002) Molecular phylogenetic perspective on evolution of lizards of the Anolis grahami series. Journal of Experimental Zoology, 294, 1 16.
45. Jansson R (2003) Global patterns in endemism explained by past climatic change. Proceedings of the Royal Society B: Biological Sciences, 270, 583 590.
46. Jezkova T, Jaeger JR, Marshall ZL, Riddle BR (2009a) Pleistocene impacts on the phylogeography of the desert pocket mouse (Chaetodipus penicillatus). Journal of Mammalogy, 90, 306 320.
47. Jezkova T, Leal M, Rodríguez-Robles JA (2009b) Living together but remaining apart: comparative phylogeography of Anolis poncensis and A. cooki, two lizards endemic to the aridlands of Puerto Rico. Biological Journal of the Linnean Society, 96, 617 634.
48. Jobb G, von Haeseler A, Strimmer K (2004) treefinder: a powerful graphical analysis environment for molecular phylogenetics. BMC Evolutionary Biology, 4, 18.
49. Joglar RL (1998) Los Coquíes de Puerto Rico: Su Historia Natural y Conservación. Editorial de la Universidad de Puerto Rico
50. Kolbe JJ, Glor RE, Rodríguez Schettino L, Chamizo Lara A, Larson A, Losos JB (2007) Multiple sources, admixture, and genetic variation in introduced Anolis lizard populations. Conservation Biology, 21, 1612 1625. (Pubitemid 350290873)
51. Kozak KH, Wiens JJ (2006) Does niche conservatism promote speciation? A case study in North American salamanders Evolution, 60, 2604 2621.
52. Leaché AD, Reeder TW (2002) Molecular systematics of the eastern fence lizard (Sceloporus undulatus): a comparison of parsimony, likelihood, and Bayesian approaches. Systematic Biology, 51, 44 68.
53. Losos JB (2009) Lizards in an Evolutionary Tree: Ecology and Adaptive Radiation of Anoles. University of California Press
54. Losos JB, Jackman TR, Larson A, de Queiroz K, Rodríguez-Schettino L (1998) Contingency and determinism in replicated adaptive radiations of island lizards. Science, 279, 2115 2118.
55. Lugo AE (2005) Los Bosques. In : Biodiversidad de Puerto Rico: Vertebrados Terrestres y Ecosistemas. Serie de Historia Natural (ed. Joglar RL pp. 397 548. Editorial del Instituto de Cultura Puertorriqueña
56. Malhotra A, Thorpe RS (2000) The dynamics of natural selection and vicariance in the Dominican anole: patterns of within-island molecular and morphological divergence. Evolution, 54, 245 258.
57. Manni F, Guérard E, Heyer E (2004) Geographic patterns of (genetic, morphologic, linguistic) variation: how barriers can be detected by using Monmonier's algorithm. Human Biology, 76, 173 190.
58. Miller MP (2005) Alleles In Space (AIS): computer software for the joint analysis of interindividual spatial and genetic information. Journal of Heredity, 96, 722 724.
59. Miller MP, Bellinger MR, Forsman ED, Haig SM (2006) Effects of historical climate change, habitat connectivity, and vicariance on genetic structure and diversity across the range of the red tree vole (Phenacomys longicaudus) in the Pacific Northwestern United States. Molecular Ecology, 15, 145 159.
60. Murphy PG, Lugo AE, Murphy AJ, Nepstad DC (1995) The dry forests of Puerto Rico's south coast. In : Tropical Forests: Management and Ecology (eds Lugo AE, Lowe C pp. 178 209. Springer-Verlag
61. Nicholson KE, Glor RE, Kolbe JJ, Larson A, Hedges SB, Losos JB (2005) Mainland colonization by island lizards. Journal of Biogeography, 32, 929 938.
62. Noonan BP, Wray KP (2006) Neotropical diversification: the effects of a complex history on diversity within the poison frog genus Dendrobates. Journal of Biogeography, 33, 1007 1020.
63. Nylander JAA (2004) MrModeltest v.2. Program distributed by the author. Evolutionary Biology Centre, Uppsala University
64. Otto-Bliesner BL, Brady EC, Clauzet G, Tomas R, Levis S, Kothavala Z (2006) Last Glacial Maximum and Holocene climate in CCSM3. Journal of Climate, 19, 2526 2544.
65. Peterson AT, Nyári AS (2008) Ecological niche conservatism and Pleistocene refugia in the thrush-like mourner, Schiffornis sp., in the neotropics. Evolution, 62, 173 183.
66. Phillips SJ (2008) Transferability, sample selection bias and background data in presence-only modelling: a response to Peterson et al. (2007). Ecography, 31, 272 278.
67. Phillips SJ, Dudík M (2008) Modeling of species distributions with Maxent: new extensions and a comprehensive evaluation. Ecography, 31, 161 175.
68. Phillips SJ, Anderson RP, Schapire RE (2006) Maximum entropy modeling of species geographic distributions. Ecological Modelling, 190, 231 259.
69. Picó R (1974) The Geography of Puerto Rico. Aldine Publishing Company
70. Poe S (2004) Phylogeny of anoles. Herpetological Monographs, 18, 37 89.
71. Polzin T, Daneshmand SV (2003) On Steiner trees and minimum spanning trees in hypergraphs. Operations Research Letters, 31, 12 20.
72. Rangel TFLVB, Diniz-Filho JAF, Bini LM (2006) Towards an integrated computational tool for spatial analysis in macroecology and biogeography. Global Ecology and Biogeography, 15, 321 327.
73. Rissler LJ, Apodaca JJ (2007) Adding more ecology into species delimitation: ecological niche models and phylogeography help define cryptic species in the black salamander (Aneides flavipunctatus). Systematic Biology, 56, 924 942.
74. Rivero JA (1998) The Amphibians and Reptiles of Puerto Rico, 2nd rev. edn. Editorial de la Universidad de Puerto Rico
75. Rodríguez-Robles JA, Jezkova T, García MA (2007) Evolutionary relationships and historical biogeography of Anolis desechensis and A. monensis, two lizards endemic to small islands in the eastern Caribbean Sea. Journal of Biogeography, 34, 1546 1558.
76. Roe BA, Ma D-P, Wilson RK, Wong JF-H (1985) The complete nucleotide sequence of the Xenopus laevis mitochondrial genome. Journal of Biological Chemistry, 260, 9759 9774.
77. Ronquist F, Huelsenbeck JP (2003) MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics, 19, 1572 1574.
78. Schwartz A, Henderson RW (1991) Amphibians and Reptiles of the West Indies: Descriptions, Distributions, and Natural History. University of Florida Press
79. Slatkin M, Hudson RR (1991) Pairwise comparisons of mitochondrial DNA sequences in stable and exponentially growing populations. Genetics, 129, 555 562.
80. Swofford DL (2003) PAUP*: Phylogenetic Analysis Using Parsimony (and Other Methods), Version 4.10b. Sinauer Associates
81. Thomas R (1999) The Puerto Rico area. In : Caribbean Amphibians and Reptiles (ed. Crother BI pp. 169 179. Academic Press
82. Waltari E, Hijmans RJ, Peterson AT, Nyári AS, Perkins SL, Guralnick RP (2007) Locating Pleistocene refugia: comparing phylogeographic and ecological niche model predictions. PLoS ONE, 2, e563.
83. Watson DF (1992) Contouring: A Guide to the Analysis and Display of Spatial Data. Pergamon Press
84. Watson DF, Philip GM (1985) A refinement of inverse distance weighted interpolation. Geo-Processing, 2, 315 327.
85. Wright S (1951) The genetical structure of populations. Annals of Eugenics, 1, 323 354.