Investigating molecular interactions in biosensors based on fluorescence resonance energy transfer

Journal of Physical Chemistry C

Volumn 114, Issue 14, 2010, Pages 6255-6264

  Li, Xuelian ^a   Kohli, Punit ^a  

^a SOUTHERN ILLINOIS UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BIOTIN-STREPTAVIDIN; DIACETYLENES; FLUORESCENCE RESONANCE ENERGY TRANSFER; HIGHLY SENSITIVE; HYDROPHOBIC CHAINS; J VALUE; LIGAND RECEPTORS; MOLAR RATIO; MOLECULAR LEVELS; MOLECULAR SENSORS; POLYDIACETYLENES; SELECTIVE DETECTION; SENSING MODEL; SENSOR RESPONSE; SPECTRAL OVERLAP; STEADY-STATE EMISSIONS; STREPTAVIDIN; SULFORHODAMINE;

BIOSENSORS; COENZYMES; EMISSION SPECTROSCOPY; ENERGY TRANSFER; FLUORESCENCE; HYDROPHOBICITY; LIPOSOMES; PERSONAL DIGITAL ASSISTANTS; PHOSPHOLIPIDS; PHOTOPOLYMERIZATION; RESONANCE;

ACETYLENE;

EID: 77951055949     PISSN: 19327447     EISSN: 19327455     Source Type: Journal    
DOI: 10.1021/jp911573g     Document Type: Article

References (68)

1. McQuade, D. T.; Pullen, A. E.; Swager, T. M. Chem. Rev. 2000, 100, 2537-2574
2. Thomas, S. W., III; Joly, G. D.; Swager, T. M. Chem. Rev. 2007, 107, 1339-1386
3. Handbook of Conducting Polymers, 3rd ed.; Skotheim, Terje A., Reynolds, John, Eds.; CRC: Boca Raton, FL, 2007
4. Tieke, B.; Wegner, G. Makromol. Chem. 1978, 179, 1639-1642
5. Georger, J. H.; Singh, A.; Price, R. R.; Schnur, J. M.; Yager, P.; Schoen, P. E. J. Am. Chem. Soc. 1987, 109, 6169-6175
6. Kolusheva, S.; Boyer, L.; Jelinek, R. Nat. Biotechnol. 2000, 18, 225-227
7. Spevak, W.; Nagy, T. O.; Charych, D. H.; Schaefer, M. E.; Gilbert, J. H.; Bednarski, M. D. J. Am. Chem. Soc. 1993, 115, 1146-1147
8. Chen, L.; McBranch, D. W.; Wang, H.-L.; Helgeson, R.; Wudl, F.; Whitten, D. G. Proc. Natl. Acad. Sci. U.S.A. 1999, 96, 12287
9. Hegger, P. S.; Hegger, A. J. Proc. Natl. Acad. Sci. U.S.A. 1999, 96, 12219
10. Kumpumbu-Kalemba, L.; Leclerc, M. Chem. Commun. 2000, 19, 1847-1848
11. Petrak, K. In Polyelectrolytes: Science and Technology; Hara, M., Ed.; Marcel Dekker: New York, 1993.
12. Moliton, A.; Hiorns, R. C. Polym. Int. 2004, 53, 1397-1412
13. Günes, S.; Neugebauer, H.; Sariciftci, N. S. Chem. Rev. 2007, 107 (4) 1324-1338
14. Charych, D. H.; Nagy, J. O.; Spevak, W.; Bednarski, M. D. Science 1993, 261, 585-588
15. Okada, S. Y.; Jelinek, R.; Charych, D. Angew. Chem., Int. Ed. 1999, 38, 655-659
16. Kolusheva, S.; Shahal, T.; Jelinek, R. J. Am. Chem. Soc. 2000, 122, 776-780
17. Reichert, A.; Nagy, J. O.; Spevak, W.; Charych, D. H. J. Am. Chem. Soc. 1995, 117, 829-830
18. Song, J.; Cisar, J. S.; Bertozzi, C. R. J. Am. Chem. Soc. 2004, 126, 8459-8465
19. Hupfer, B.; Ringsdorf, H. Chem. Phys. Lipids 1983, 33, 263-82
20. Kolusheva, S.; Kafri, R.; Marina, K.; Jelinek, R. J. Am. Chem. Soc. 2001, 123, 417-422
21. Singh, A.; Herendeen, B.; Gaber, B. P.; Sheridan, J. P. Polym. Mater. Sci. Eng. 1987, 57, 283-285
22. Okada, S.; Peng, S.; Spevak, W.; Charych, D. Acc. Chem. Res. 1998, 31, 229-239
23. Sun, C.; Zhang, Y. J.; Fan, Y.; Li, Y. J.; Li, J. H. J. Inorg. Biochem. 2004, 98, 925-930
24. Pan, J.; Charych, D. Langmuir 1997, 13, 1365-1367
25. Ho, H.-A.; Leclerc, M. J. Am. Chem. Soc. 2004, 126, 1384
26. Reppy, M. A.; Pindzola, B. A. Chem. Commun. 2007, 42, 4317-4338
27. Ma, G.; Cheng, Q. Langmuir 2006, 22, 6743-6745
28. Ma, G.; Müller, A. M.; Bardeen, C. J.; Cheng, Q. Adv. Mater. 2006, 18, 55-60
29. Pindzola, B. A.; Nguyen, A. T.; Reppy, M. A. Chem. Commun. 2006, 8, 906-908
30. Lee, J.; Kim, H.-J.; Kim, J. J. Am. Chem. Soc. 2008, 130, 5010-5011
31. Li, X.; McCarroll, M.; Kohli, P. Langmuir 2006, 22, 8615-8617
32. Li, X.; Malthews, S.; Kohli, P. J. Phys. Chem. B 2008, 112, 13263-13272
33. Fan, L. J.; Zhang, Y.; Murphy, C. B.; Angell, S. E.; Parkera, M. F. L.; Flynn, B. R.; Jones, W. E., Jr. Coord. Chem. Rev. 2009, 253, 410-422
34. Ahn, D. J.; Kim, J.-M. Acc. Chem. Res. 2008, 41, 805-816
35. Yoon, B.; Lee, S.; Kim, J.-M. Chem. Soc. Rev. 2009, 38, 1958-1968
36. Xu, Q.-H.; Wang, S.; Korystov, D.; Mikhailovsky, A.; Bazan, G. C.; Moses, D.; Heeger, A. J. Proc. Natl. Acad. Sci. U.S.A. 2005, 102, 530-535
37. Xu, Q.-H.; Gaylord, B. S.; Wang, S.; Bazan, G. C.; Moses, D. and; Heeger, A. J. Proc. Natl. Acad. Sci. U.S.A. 2004, 101, 11634-11639
38. Gaylord, B. S.; Heeger, A. J.; Bazan, G. C. Proc. Natl. Acad. Sci. U.S.A. 2002, 99, 10954-10957
39. Liu, B.; Bazan, G. C. Proc. Natl. Acad. Sci. U.S.A. 2005, 102, 589-593
40. Gaylord, B. S.; Massie, M. R.; Feinstein, S. C.; Bazan, G. C. Proc. Natl. Acad. Sci. U.S.A. 2005, 102, 34-39
41. Wang, S.; Gaylord, B. S.; Bazan, G. C. J. Am. Chem. Soc. 2004, 126, 5446-5451
42. Lee, K.; Rouillard, J.-M.; Pham, T.; Gulari, E.; Kim, J. Angew. Chem., Int. Ed. 2007, 46, 4667
43. Harsanyi, G. Polymer Films in Sensor Applications; CRC: Boca Raton, FL, 1995. Conjugated Polymers: Theory, Synthesis, Properties, and Characterization; Skotheim, Terje A., Reynolds, John, Eds.; CRC: Boca Raton, FL, 2006.
44. Whitten, D.; Jones, R.; Bergestedt, T.; McBranch, D.; Chen, L.; Heeger, P. In Optical Sensors and Switches; Ramamurthy, V.; Schanze, K. S., Eds.; Marcle Dekker:: New York, 2001; p 189.
45. Jones, R. M.; Bergstedt, T. S.; McBranch, D. W.; Whitten, D. G. J. Am. Chem. Soc. 2001, 123, 6726
46. Algar, W. R.; Krull, U. J. Anal. Chem. 2009, 81, 4113-4120
47. Algar, W. R.; Krull, U. J. Anal. Bioanal. Chem. 2008, 391, 1609-1618
48. Kim, Y. P.; Oh, Y. H.; Oh, E.; Ko, S.; Han, M. K.; Kim, H. S. Anal. Chem. 2008, 80, 4634-4641
49. Suzuki, M.; Husimi, Y.; Komatsu, H.; Suzuki, K.; Douglas, K. T. J. Am. Chem. Soc. 2008, 130, 5720-5725
50. Huang, S.; Xiao, Q.; He, Z. K.; Liu, Y.; Tinnefeld, P.; Su, X. R.; Peng, X. N. Chem. Commun. 2008, 45, 5990-5995
51. Medintz, I. L.; Mattoussi, H. Phys. Chem. Chem. Phys. 2009, 11, 17-45
52. Cissell, K. A.; Campbell, S.; Deo, S. K. Anal. Bioanal. Chem. 2008, 391, 2577-2581
53. Blagoi, G.; Rosenzweig, N.; Rosenzweig, Z. Fluorescence Sensors and Biosensors; Thompson, R. B., Ed.; CRC Press: Boca Raton, FL, 2006; Chapter 5.
54. Shi, L.; De Paoli, V.; Rosenzweig, N.; Rosenzweig, Z. J. Am. Chem. Soc. 2006, 128, 10378-10379
55. Savage, D.; Mattson, G.; Desai, S.; Nielander, G.; Morgensen, S.; Conklin, E. Avidin-Biotin Chemistry: A Handbook, Pierce Chemical Company: Rockford, IL, 1992; pp 1-23.
56. Green, N. M. Avidin and Streptavidin Methods Enzymol. 1990, 184, 51-67
57. Titus, J. A.; Haugland, R.; Sharrow, S.; Segal, D. M. J. Immunol. Methods 1982, 50, 193-204
58. Geiger, E.; Hug, P.; Keller, B. A. Macromol. Chem. Phys. 2002, 203, 2422-2431
59. Spevak, W.; Nagy, J. O.; Charych, D. H.; Schaefer, M. E.; Gilbert, J. H.; Bednarski, M. D. J. Am. Chem. Soc. 1993, 115, 1146
60. Avidin-Biotin Technology; Wilchek, M.; Bayer, E. A., Eds.; Methods in Enzymology, Vol. 184; Academic Press, Inc.: San Diego, CA, 1990; Wang, J.; Uttamchandani, M.; Sun, L. P.; Yao, S. O. Chem. Commun. 2006, 7, 717-719
61. Mitochondria, 2nd ed.; Pon, L. A.; Schon, E. A., Eds.; Methods in Cell Biology, Vol. 80; Academic Press: Amsterdam and Boston, 2007; pp 426-428. MSDS for HABA from Pierce.
62. Clapp, A. R.; Medintz, I. L.; Mattoussi, H. Chem. Phys. Chem. 2006, 7, 47-57
63. Lakowicz, J. R. Principles of Fluorescence Spectroscopy; Kluwer Academics: New York, 1999; Chapter 13.
64. Luckey, Mary In Membrane Structural Biology: With Biochemical and Biophysical Foundations; Cambridge University Press: Cambridge, 2008; Chapter 2. Yeagle, P. L. The Structure of Biological Membranes; CRC Press: Boca Raton, FL, 2005; Chapters 1-3.
65. Duzgunes, N.; Bagatolli, L. A.; Meers, P.; Oh, Y.-K.; Straubinger, R. M. In Liposomes: A Practical Approach, 2nd ed.; Torchilin, V. P.; Weissig, V., Eds.; Oxford Univerity Press: Oxford, 2003; p 118. Reppy, M. A. J. Fluoresc. 2008, 18, 461-471
66. Bart, J. C. J. Plastics additives: advanced industrial analysis; ISO Press: Amsterdam and Washington, DC, 2006; p 78.
67. Nishijima, Y.; Ueno, K.; Juodkazis, S.; Mizeikis, V.; Fujiwara, H.; Sasaki, K.; Misawa, H. Opt. Express 2009, 17, 2976
68. Dashtiev, M.; Azov, V.; Frankevich, V.; Scharfenberg, L.; Zenobi, R. J. Am. Soc. Mass Spectrom. 2005, 16, 1481-1487