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Volumn 11, Issue , 2010, Pages

High-throughput analysis of candidate imprinted genes and allele-specific gene expression in the human term placenta

Author keywords

[No Author keywords available]

Indexed keywords

COMPLEMENTARY DNA; GENE PRODUCT; GENOMIC DNA; PROTEIN PHACTR2; PROTEIN PLAGL1; PROTEIN ZNF331; UNCLASSIFIED DRUG; ACTIN BINDING PROTEIN; DNA BINDING PROTEIN; NERVE PROTEIN; PHACTR2 PROTEIN, HUMAN; TUMOR PROTEIN; ZNF331 PROTEIN, HUMAN;

EID: 77950930978     PISSN: None     EISSN: 14712156     Source Type: Journal    
DOI: 10.1186/1471-2156-11-25     Document Type: Article
Times cited : (56)

References (53)
  • 1
    • 0013816340 scopus 로고
    • Cellular localization of immunoglobulins with different allotypic specificities in rabbit lymphoid tissues
    • 10.1084/jem.122.5.853, 2138120, 4159057
    • Pernis B, Chiappino G, Kelus AS, Gell PG. Cellular localization of immunoglobulins with different allotypic specificities in rabbit lymphoid tissues. J Exp Med 1965, 122(5):853-876. 10.1084/jem.122.5.853, 2138120, 4159057.
    • (1965) J Exp Med , vol.122 , Issue.5 , pp. 853-876
    • Pernis, B.1    Chiappino, G.2    Kelus, A.S.3    Gell, P.G.4
  • 2
    • 0027981484 scopus 로고
    • Allelic inactivation regulates olfactory receptor gene expression
    • 10.1016/S0092-8674(94)90562-2, 8087849
    • Chess A, Simon I, Cedar H, Axel R. Allelic inactivation regulates olfactory receptor gene expression. Cell 1994, 78(5):823-834. 10.1016/S0092-8674(94)90562-2, 8087849.
    • (1994) Cell , vol.78 , Issue.5 , pp. 823-834
    • Chess, A.1    Simon, I.2    Cedar, H.3    Axel, R.4
  • 3
    • 0035234557 scopus 로고    scopus 로고
    • Genomic imprinting: parental influence on the genome
    • 10.1038/35047554, 11253064
    • Reik W, Walter J. Genomic imprinting: parental influence on the genome. Nature Reviews Genetics 2001, 2(1):21-32. 10.1038/35047554, 11253064.
    • (2001) Nature Reviews Genetics , vol.2 , Issue.1 , pp. 21-32
    • Reik, W.1    Walter, J.2
  • 4
    • 0036323502 scopus 로고    scopus 로고
    • Physiological functions of imprinted genes
    • 10.1002/jcp.10129, 12124770
    • Tycko B, Morison IM. Physiological functions of imprinted genes. Journal of Cellular Physiology 2002, 192(3):245-258. 10.1002/jcp.10129, 12124770.
    • (2002) Journal of Cellular Physiology , vol.192 , Issue.3 , pp. 245-258
    • Tycko, B.1    Morison, I.M.2
  • 5
    • 34250662288 scopus 로고    scopus 로고
    • An epigenetic approach to cancer etiology
    • 10.1097/PPO.0b013e31803c6e3b, 17464249
    • Feinberg AP. An epigenetic approach to cancer etiology. Cancer J 2007, 13(1):70-74. 10.1097/PPO.0b013e31803c6e3b, 17464249.
    • (2007) Cancer J , vol.13 , Issue.1 , pp. 70-74
    • Feinberg, A.P.1
  • 6
    • 22144491132 scopus 로고    scopus 로고
    • A census of mammalian imprinting
    • 10.1016/j.tig.2005.06.008, 15990197
    • Morison IM, Ramsay JP, Spencer HG. A census of mammalian imprinting. Trends in Genetics 2005, 21(8):457-465. 10.1016/j.tig.2005.06.008, 15990197.
    • (2005) Trends in Genetics , vol.21 , Issue.8 , pp. 457-465
    • Morison, I.M.1    Ramsay, J.P.2    Spencer, H.G.3
  • 7
    • 7344254106 scopus 로고    scopus 로고
    • A catalogue of imprinted genes and parent-of-origin effects in humans and animals
    • 10.1093/hmg/7.10.1599, 9735381
    • Morison IM, Reeve AE. A catalogue of imprinted genes and parent-of-origin effects in humans and animals. Human Molecular Genetics 1998, 7(10):1599-1609. 10.1093/hmg/7.10.1599, 9735381.
    • (1998) Human Molecular Genetics , vol.7 , Issue.10 , pp. 1599-1609
    • Morison, I.M.1    Reeve, A.E.2
  • 8
    • 22344440797 scopus 로고    scopus 로고
    • Genome-wide prediction of imprinted murine genes
    • 10.1101/gr.3303505, 1142478, 15930497
    • Luedi PP, Hartemink AJ, Jirtle RL. Genome-wide prediction of imprinted murine genes. Genome Research 2005, 15(6):875-884. 10.1101/gr.3303505, 1142478, 15930497.
    • (2005) Genome Research , vol.15 , Issue.6 , pp. 875-884
    • Luedi, P.P.1    Hartemink, A.J.2    Jirtle, R.L.3
  • 9
    • 33845365768 scopus 로고    scopus 로고
    • Maximum likelihood inference of imprinting and allele-specific expression from EST data
    • 10.1093/bioinformatics/btl521, 17038342
    • Seoighe C, Nembaware V, Scheffler K. Maximum likelihood inference of imprinting and allele-specific expression from EST data. Bioinformatics 2006, 22(24):3032-3039. 10.1093/bioinformatics/btl521, 17038342.
    • (2006) Bioinformatics , vol.22 , Issue.24 , pp. 3032-3039
    • Seoighe, C.1    Nembaware, V.2    Scheffler, K.3
  • 10
    • 17044406251 scopus 로고    scopus 로고
    • Imprinted genes in the placenta--a review
    • 10.1016/j.placenta.2004.12.009, 15837057
    • Coan PM, Burton GJ, Ferguson-Smith AC. Imprinted genes in the placenta--a review. Placenta 2005, 26(Suppl A):S10-20. 10.1016/j.placenta.2004.12.009, 15837057.
    • (2005) Placenta , vol.26 , Issue.SUPPL. A
    • Coan, P.M.1    Burton, G.J.2    Ferguson-Smith, A.C.3
  • 11
    • 0037119584 scopus 로고    scopus 로고
    • Allelic variation in human gene expression
    • 10.1126/science.1072545, 12183620
    • Yan H, Yuan W, Velculescu VE, Vogelstein B, Kinzler KW. Allelic variation in human gene expression. Science 2002, 297(5584):1143. 10.1126/science.1072545, 12183620.
    • (2002) Science , vol.297 , Issue.5584 , pp. 1143
    • Yan, H.1    Yuan, W.2    Velculescu, V.E.3    Vogelstein, B.4    Kinzler, K.W.5
  • 12
    • 0012789869 scopus 로고    scopus 로고
    • Allelic variation in gene expression is common in the human genome
    • 403776, 12902379
    • Lo HS, Wang Z, Hu Y, Yang HH, Gere S, Buetow KH, Lee MP. Allelic variation in gene expression is common in the human genome. Genome Research 2003, 13(8):1855-1862. 403776, 12902379.
    • (2003) Genome Research , vol.13 , Issue.8 , pp. 1855-1862
    • Lo, H.S.1    Wang, Z.2    Hu, Y.3    Yang, H.H.4    Gere, S.5    Buetow, K.H.6    Lee, M.P.7
  • 13
    • 33644662511 scopus 로고    scopus 로고
    • Analysis of allelic differential expression in human white blood cells
    • 10.1101/gr.4559106, 1415206, 16467561
    • Pant PV, Tao H, Beilharz EJ, Ballinger DG, Cox DR, Frazer KA. Analysis of allelic differential expression in human white blood cells. Genome Research 2006, 16(3):331-9. 10.1101/gr.4559106, 1415206, 16467561.
    • (2006) Genome Research , vol.16 , Issue.3 , pp. 331-339
    • Pant, P.V.1    Tao, H.2    Beilharz, E.J.3    Ballinger, D.G.4    Cox, D.R.5    Frazer, K.A.6
  • 14
    • 36249017308 scopus 로고    scopus 로고
    • Widespread monoallelic expression on human autosomes
    • 10.1126/science.1148910, 18006746
    • Gimelbrant A, Hutchinson JN, Thompson BR, Chess A. Widespread monoallelic expression on human autosomes. Science 2007, 318(5853):1136-1140. 10.1126/science.1148910, 18006746.
    • (2007) Science , vol.318 , Issue.5853 , pp. 1136-1140
    • Gimelbrant, A.1    Hutchinson, J.N.2    Thompson, B.R.3    Chess, A.4
  • 16
    • 0037381011 scopus 로고    scopus 로고
    • In vivo characterization of regulatory polymorphisms by allele-specific quantification of RNA polymerase loading
    • 10.1038/ng1124, 12627232
    • Knight JC, Keating BJ, Rockett KA, Kwiatkowski DP. In vivo characterization of regulatory polymorphisms by allele-specific quantification of RNA polymerase loading. Nature Genetics 2003, 33(4):469-475. 10.1038/ng1124, 12627232.
    • (2003) Nature Genetics , vol.33 , Issue.4 , pp. 469-475
    • Knight, J.C.1    Keating, B.J.2    Rockett, K.A.3    Kwiatkowski, D.P.4
  • 17
    • 40149090710 scopus 로고    scopus 로고
    • Differential allelic expression in the human genome: a robust approach to identify genetic and epigenetic cis-acting mechanisms regulating gene expression
    • 10.1371/journal.pgen.1000006, 2265535, 18454203
    • Serre D, Gurd S, Ge B, Sladek R, Sinnett D, Harmsen E, Bibikova M, Chudin E, Barker DL, Dickinson T, et al. Differential allelic expression in the human genome: a robust approach to identify genetic and epigenetic cis-acting mechanisms regulating gene expression. PLoS Genet 2008, 4(2):e1000006. 10.1371/journal.pgen.1000006, 2265535, 18454203.
    • (2008) PLoS Genet , vol.4 , Issue.2
    • Serre, D.1    Gurd, S.2    Ge, B.3    Sladek, R.4    Sinnett, D.5    Harmsen, E.6    Bibikova, M.7    Chudin, E.8    Barker, D.L.9    Dickinson, T.10
  • 19
    • 33846978695 scopus 로고    scopus 로고
    • Relative impact of nucleotide and copy number variation on gene expression phenotypes
    • 10.1126/science.1136678, 2665772, 17289997
    • Stranger BE, Forrest MS, Dunning M, Ingle CE, Beazley C, Thorne N, Redon R, Bird CP, de Grassi A, Lee C, et al. Relative impact of nucleotide and copy number variation on gene expression phenotypes. Science 2007, 315(5813):848-853. 10.1126/science.1136678, 2665772, 17289997.
    • (2007) Science , vol.315 , Issue.5813 , pp. 848-853
    • Stranger, B.E.1    Forrest, M.S.2    Dunning, M.3    Ingle, C.E.4    Beazley, C.5    Thorne, N.6    Redon, R.7    Bird, C.P.8    de Grassi, A.9    Lee, C.10
  • 21
    • 37749009110 scopus 로고    scopus 로고
    • A genome-wide approach to identifying novel-imprinted genes
    • 10.1007/s00439-007-0440-1, 17955261
    • Pollard KS, Serre D, Wang X, Tao H, Grundberg E, Hudson TJ, Clark AG, Frazer K. A genome-wide approach to identifying novel-imprinted genes. Hum Genet 2008, 122(6):625-634. 10.1007/s00439-007-0440-1, 17955261.
    • (2008) Hum Genet , vol.122 , Issue.6 , pp. 625-634
    • Pollard, K.S.1    Serre, D.2    Wang, X.3    Tao, H.4    Grundberg, E.5    Hudson, T.J.6    Clark, A.G.7    Frazer, K.8
  • 23
    • 58149174384 scopus 로고    scopus 로고
    • A sensitive functional assay reveals frequent loss of genomic imprinting in human placenta
    • 2714257, 18769151
    • Lambertini L, Diplas AI, Lee MJ, Sperling R, Chen J, Wetmur J. A sensitive functional assay reveals frequent loss of genomic imprinting in human placenta. Epigenetics 2008, 3(5):261-269. 2714257, 18769151.
    • (2008) Epigenetics , vol.3 , Issue.5 , pp. 261-269
    • Lambertini, L.1    Diplas, A.I.2    Lee, M.J.3    Sperling, R.4    Chen, J.5    Wetmur, J.6
  • 27
    • 74549161822 scopus 로고    scopus 로고
    • Epigenetic control of the expression of a primate-specific microRNA cluster in human cancer cells
    • Tsai KW, Kao HW, Chen HC, Chen SJ, Lin WC. Epigenetic control of the expression of a primate-specific microRNA cluster in human cancer cells. Epigenetics 2009, 4(8):587-592.
    • (2009) Epigenetics , vol.4 , Issue.8 , pp. 587-592
    • Tsai, K.W.1    Kao, H.W.2    Chen, H.C.3    Chen, S.J.4    Lin, W.C.5
  • 30
    • 45849126048 scopus 로고    scopus 로고
    • Molecular evolution of a primate-specific microRNA family
    • 10.1093/molbev/msn094, 18417486
    • Zhang R, Wang YQ, Su B. Molecular evolution of a primate-specific microRNA family. Mol Biol Evol 2008, 25(7):1493-1502. 10.1093/molbev/msn094, 18417486.
    • (2008) Mol Biol Evol , vol.25 , Issue.7 , pp. 1493-1502
    • Zhang, R.1    Wang, Y.Q.2    Su, B.3
  • 32
    • 4043117827 scopus 로고    scopus 로고
    • Impaired glucose homeostasis in transgenic mice expressing the human transient neonatal diabetes mellitus locus, TNDM
    • 484972, 15286800
    • Ma D, Shield JP, Dean W, Leclerc I, Knauf C, Burcelin RR, Rutter GA, Kelsey G. Impaired glucose homeostasis in transgenic mice expressing the human transient neonatal diabetes mellitus locus, TNDM. J Clin Invest 2004, 114(3):339-348. 484972, 15286800.
    • (2004) J Clin Invest , vol.114 , Issue.3 , pp. 339-348
    • Ma, D.1    Shield, J.P.2    Dean, W.3    Leclerc, I.4    Knauf, C.5    Burcelin, R.R.6    Rutter, G.A.7    Kelsey, G.8
  • 33
    • 0242664782 scopus 로고    scopus 로고
    • Scapinin, a putative protein phosphatase-1 regulatory subunit associated with the nuclear nonchromatin structure
    • 10.1074/jbc.M305227200, 12925532
    • Sagara J, Higuchi T, Hattori Y, Moriya M, Sarvotham H, Shima H, Shirato H, Kikuchi K, Taniguchi S. Scapinin, a putative protein phosphatase-1 regulatory subunit associated with the nuclear nonchromatin structure. J Biol Chem 2003, 278(46):45611-45619. 10.1074/jbc.M305227200, 12925532.
    • (2003) J Biol Chem , vol.278 , Issue.46 , pp. 45611-45619
    • Sagara, J.1    Higuchi, T.2    Hattori, Y.3    Moriya, M.4    Sarvotham, H.5    Shima, H.6    Shirato, H.7    Kikuchi, K.8    Taniguchi, S.9
  • 35
    • 64149117979 scopus 로고    scopus 로고
    • Scapinin, the protein phosphatase 1 binding protein, enhances cell spreading and motility by interacting with the actin cytoskeleton
    • 10.1371/journal.pone.0004247, 2626280, 19158953
    • Sagara J, Arata T, Taniguchi S. Scapinin, the protein phosphatase 1 binding protein, enhances cell spreading and motility by interacting with the actin cytoskeleton. PLoS One 2009, 4(1):e4247. 10.1371/journal.pone.0004247, 2626280, 19158953.
    • (2009) PLoS One , vol.4 , Issue.1
    • Sagara, J.1    Arata, T.2    Taniguchi, S.3
  • 36
    • 34347232361 scopus 로고    scopus 로고
    • Phactr4 regulates neural tube and optic fissure closure by controlling PP1-, Rb-, and E2F1-regulated cell-cycle progression
    • 10.1016/j.devcel.2007.04.018, 17609112
    • Kim TH, Goodman J, Anderson KV, Niswander L. Phactr4 regulates neural tube and optic fissure closure by controlling PP1-, Rb-, and E2F1-regulated cell-cycle progression. Dev Cell 2007, 13(1):87-102. 10.1016/j.devcel.2007.04.018, 17609112.
    • (2007) Dev Cell , vol.13 , Issue.1 , pp. 87-102
    • Kim, T.H.1    Goodman, J.2    Anderson, K.V.3    Niswander, L.4
  • 37
    • 40649117121 scopus 로고    scopus 로고
    • Paramutation-like effects at the mouse scapinin (Phactr3) locus
    • 10.1016/j.jmb.2008.01.062, 18295233
    • Worch S, Hansmann I, Schlote D. Paramutation-like effects at the mouse scapinin (Phactr3) locus. J Mol Biol 2008, 377(3):605-608. 10.1016/j.jmb.2008.01.062, 18295233.
    • (2008) J Mol Biol , vol.377 , Issue.3 , pp. 605-608
    • Worch, S.1    Hansmann, I.2    Schlote, D.3
  • 38
    • 35448978427 scopus 로고    scopus 로고
    • Sequence-based bioinformatic prediction and QUASEP identify genomic imprinting of the KCNK9 potassium channel gene in mouse and human
    • 10.1093/hmg/ddm216, 17704508
    • Ruf N, Bahring S, Galetzka D, Pliushch G, Luft FC, Nurnberg P, Haaf T, Kelsey G, Zechner U. Sequence-based bioinformatic prediction and QUASEP identify genomic imprinting of the KCNK9 potassium channel gene in mouse and human. Hum Mol Genet 2007, 16(21):2591-2599. 10.1093/hmg/ddm216, 17704508.
    • (2007) Hum Mol Genet , vol.16 , Issue.21 , pp. 2591-2599
    • Ruf, N.1    Bahring, S.2    Galetzka, D.3    Pliushch, G.4    Luft, F.C.5    Nurnberg, P.6    Haaf, T.7    Kelsey, G.8    Zechner, U.9
  • 39
    • 35448978427 scopus 로고    scopus 로고
    • Sequence-based bioinformatic prediction and QUASEP identify genomic imprinting of the KCNK9 potassium channel gene in mouse and human
    • 10.1093/hmg/ddm216, 17704508
    • Ruf N, Bahring S, Galetzka D, Pliushch G, Luft FC, Nurnberg P, Haaf T, Kelsey G, Zechner U. Sequence-based bioinformatic prediction and QUASEP identify genomic imprinting of the KCNK9 potassium channel gene in mouse and human. Human Molecular Genetics 2007, 16(21):2591-2599. 10.1093/hmg/ddm216, 17704508.
    • (2007) Human Molecular Genetics , vol.16 , Issue.21 , pp. 2591-2599
    • Ruf, N.1    Bahring, S.2    Galetzka, D.3    Pliushch, G.4    Luft, F.C.5    Nurnberg, P.6    Haaf, T.7    Kelsey, G.8    Zechner, U.9
  • 40
    • 37249059981 scopus 로고    scopus 로고
    • Computational and experimental identification of novel human imprinted genes
    • 10.1101/gr.6584707, 2099581, 18055845
    • Luedi PP, Dietrich FS, Weidman JR, Bosko JM, Jirtle RL, Hartemink AJ. Computational and experimental identification of novel human imprinted genes. Genome Res 2007, 17(12):1723-1730. 10.1101/gr.6584707, 2099581, 18055845.
    • (2007) Genome Res , vol.17 , Issue.12 , pp. 1723-1730
    • Luedi, P.P.1    Dietrich, F.S.2    Weidman, J.R.3    Bosko, J.M.4    Jirtle, R.L.5    Hartemink, A.J.6
  • 41
    • 46249115442 scopus 로고    scopus 로고
    • Genome-wide analysis reveals a complex pattern of genomic imprinting in mice
    • 10.1371/journal.pgen.1000091, 2390766, 18535661
    • Wolf JB, Cheverud JM, Roseman C, Hager R. Genome-wide analysis reveals a complex pattern of genomic imprinting in mice. PLoS Genet 2008, 4(6):e1000091. 10.1371/journal.pgen.1000091, 2390766, 18535661.
    • (2008) PLoS Genet , vol.4 , Issue.6
    • Wolf, J.B.1    Cheverud, J.M.2    Roseman, C.3    Hager, R.4
  • 46
    • 70149113077 scopus 로고    scopus 로고
    • R Foundation for Statistical Computing, Vienna, Austria, R Development Core Team
    • R Development Core Team R: A Language and Environment for Statistical Computing 2009, R Foundation for Statistical Computing, Vienna, Austria, R Development Core Team., http://www.R-project.org
    • (2009) R: A Language and Environment for Statistical Computing
  • 47
    • 18144425478 scopus 로고    scopus 로고
    • A genome-wide scalable SNP genotyping assay using microarray technology
    • 10.1038/ng1547, 15838508
    • Gunderson KL, Steemers FJ, Lee G, Mendoza LG, Chee MS. A genome-wide scalable SNP genotyping assay using microarray technology. Nature Genetics 2005, 37(5):549-554. 10.1038/ng1547, 15838508.
    • (2005) Nature Genetics , vol.37 , Issue.5 , pp. 549-554
    • Gunderson, K.L.1    Steemers, F.J.2    Lee, G.3    Mendoza, L.G.4    Chee, M.S.5
  • 49
    • 4544341015 scopus 로고    scopus 로고
    • Linear models and empirical bayes methods for assessing differential expression in microarray experiments
    • 10.2202/1544-6115.1027, 16646809
    • Smyth GK. Linear models and empirical bayes methods for assessing differential expression in microarray experiments. Statistical Applications in Genetics and Molecular Biology 2004, 3:Article3. 10.2202/1544-6115.1027, 16646809.
    • (2004) Statistical Applications in Genetics and Molecular Biology , vol.3
    • Smyth, G.K.1
  • 50
    • 34548561818 scopus 로고    scopus 로고
    • Beadarray: R classes and methods for Illumina bead-based data
    • 10.1093/bioinformatics/btm311, 17586828
    • Dunning MJ, Smith ML, Ritchie ME, Tavaré S. beadarray: R classes and methods for Illumina bead-based data. Bioinformatics 2007, 23(16):2183-2184. 10.1093/bioinformatics/btm311, 17586828.
    • (2007) Bioinformatics , vol.23 , Issue.16 , pp. 2183-2184
    • Dunning, M.J.1    Smith, M.L.2    Ritchie, M.E.3    Tavaré, S.4
  • 51
    • 77953357922 scopus 로고    scopus 로고
    • Limma
    • Limma. , http://bioinf.wehi.edu.au/limma/
  • 52
    • 0036856355 scopus 로고    scopus 로고
    • MethPrimer: designing primers for methylation PCRs
    • 10.1093/bioinformatics/18.11.1427, 12424112
    • Li LC, Dahiya R. MethPrimer: designing primers for methylation PCRs. Bioinformatics 2002, 18(11):1427-1431. 10.1093/bioinformatics/18.11.1427, 12424112.
    • (2002) Bioinformatics , vol.18 , Issue.11 , pp. 1427-1431
    • Li, L.C.1    Dahiya, R.2
  • 53
    • 41149172342 scopus 로고    scopus 로고
    • Bisulfite sequencing Data Presentation and Compilation (BDPC) web server--a useful tool for DNA methylation analysis
    • 10.1093/nar/gkn083, 2275153, 18296484
    • Rohde C, Zhang Y, Jurkowski TP, Stamerjohanns H, Reinhardt R, Jeltsch A. Bisulfite sequencing Data Presentation and Compilation (BDPC) web server--a useful tool for DNA methylation analysis. Nucleic Acids Res 2008, 36(5):e34. 10.1093/nar/gkn083, 2275153, 18296484.
    • (2008) Nucleic Acids Res , vol.36 , Issue.5
    • Rohde, C.1    Zhang, Y.2    Jurkowski, T.P.3    Stamerjohanns, H.4    Reinhardt, R.5    Jeltsch, A.6


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