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Volumn 22, Issue 24, 2006, Pages 3032-3039

Maximum likelihood inference of imprinting and allele-specific expression from EST data

Author keywords

[No Author keywords available]

Indexed keywords

COMPLEMENTARY DNA;

EID: 33845365768     PISSN: 13674803     EISSN: 13674811     Source Type: Journal    
DOI: 10.1093/bioinformatics/btl521     Document Type: Article
Times cited : (10)

References (36)
  • 1
    • 0035834430 scopus 로고    scopus 로고
    • In silico screening for tumour-specific expressed sequences in human genome
    • Baranova, A.V. et al. (2001) In silico screening for tumour-specific expressed sequences in human genome. FEBS Lett., 508, 143-148.
    • (2001) FEBS Lett. , vol.508 , pp. 143-148
    • Baranova, A.V.1
  • 2
    • 5444256188 scopus 로고    scopus 로고
    • Allele-specific gene expression differences in humans
    • (Spec.)
    • Buckland, P.R. (2004) Allele-specific gene expression differences in humans. Hum. Mol. Genet., 13 (Spec No 2), R255-R260.
    • (2004) Hum. Mol. Genet. , vol.13 , Issue.2
    • Buckland, P.R.1
  • 3
    • 0031762651 scopus 로고    scopus 로고
    • Imprinting mechanisms
    • Constancia, M. et al. (1998) Imprinting mechanisms. Genome Res., 8, 881-900.
    • (1998) Genome Res. , vol.8 , pp. 881-900
    • Constancia, M.1
  • 4
    • 27544479631 scopus 로고    scopus 로고
    • Survey of allelic expression using est mining
    • Ge, B. et al. (2005) Survey of allelic expression using est mining. Genome Res., 15, 1584-1591.
    • (2005) Genome Res. , vol.15 , pp. 1584-1591
    • Ge, B.1
  • 7
    • 6044267852 scopus 로고    scopus 로고
    • Cathepsin d protein levels in colorectal tumors: Divergent expression patterns suggest complex regulation and function
    • Iacobuzio-Donahue, C. et al. (2004) Cathepsin d protein levels in colorectal tumors: Divergent expression patterns suggest complex regulation and function. Int. J. Oncol., 24, 473-485.
    • (2004) Int. J. Oncol. , vol.24 , pp. 473-485
    • Iacobuzio-Donahue, C.1
  • 8
    • 0028958031 scopus 로고
    • Insulin-like growth factors and their binding proteins: Biological actions
    • Jones, J.I. and Clemmons, D.R. (1995) Insulin-like growth factors and their binding proteins: Biological actions. Endocr. Rev., 16, 3-34.
    • (1995) Endocr. Rev. , vol.16 , pp. 3-34
    • Jones, J.I.1    Clemmons, D.R.2
  • 9
    • 0037250168 scopus 로고    scopus 로고
    • The ucsc genome browser database
    • Karolchik, D. et al. (2003) The ucsc genome browser database. Nucleic Acids Res., 31, 51-54.
    • (2003) Nucleic Acids Res. , vol.31 , pp. 51-54
    • Karolchik, D.1
  • 10
    • 0038817774 scopus 로고    scopus 로고
    • Evoc: A controlled vocabulary for unifying gene expression data
    • Kelso, J. et al. (2003) evoc: A controlled vocabulary for unifying gene expression data. Genome Res., 13, 1222-1230.
    • (2003) Genome Res. , vol.13 , pp. 1222-1230
    • Kelso, J.1
  • 11
    • 0036226603 scopus 로고    scopus 로고
    • Blat-the blast-like alignment tool
    • Kent, W.J. (2002) Blat-the blast-like alignment tool. Genome Res., 12, 656-664.
    • (2002) Genome Res. , vol.12 , pp. 656-664
    • Kent, W.J.1
  • 12
    • 1242271304 scopus 로고    scopus 로고
    • Allele-specific gene expression uncovered
    • Knight, J.C. (2004) Allele-specific gene expression uncovered. Trends Genet., 20, 113-116.
    • (2004) Trends Genet. , vol.20 , pp. 113-116
    • Knight, J.C.1
  • 13
    • 0029808561 scopus 로고    scopus 로고
    • Kiss-1, a novel human malignant melanoma metastasis-suppressor gene
    • Lee, J.H. et al. (1996) Kiss-1, a novel human malignant melanoma metastasis-suppressor gene. J. Natl Cancer Inst., 88, 1731-1737.
    • (1996) J. Natl Cancer Inst. , vol.88 , pp. 1731-1737
    • Lee, J.H.1
  • 14
    • 26244456557 scopus 로고    scopus 로고
    • Allelic variation in gene expression identified through computational analysis of the dbest database
    • Lin, W. et al. (2005) Allelic variation in gene expression identified through computational analysis of the dbest database. Genomics, 86, 518-527.
    • (2005) Genomics , vol.86 , pp. 518-527
    • Lin, W.1
  • 15
    • 0012789869 scopus 로고    scopus 로고
    • Allelic variation in gene expression is common in the human genome
    • Lo, H.S. et al. (2003) Allelic variation in gene expression is common in the human genome. Genome Res., 13, 1855-1862.
    • (2003) Genome Res. , vol.13 , pp. 1855-1862
    • Lo, H.S.1
  • 16
    • 22344440797 scopus 로고    scopus 로고
    • Genome-wide prediction of imprinted murine genes
    • Luedi, P.P. et al. (2005) Genome-wide prediction of imprinted murine genes. Genome Res., 15, 875-884.
    • (2005) Genome Res. , vol.15 , pp. 875-884
    • Luedi, P.P.1
  • 17
    • 18444412259 scopus 로고    scopus 로고
    • Asb4, ata3, and dcn are novel imprinted genes identified by high-throughput screening using riken cdna microarray
    • Mizuno, Y. et al. (2002) Asb4, ata3, and dcn are novel imprinted genes identified by high-throughput screening using riken cdna microarray. Biochem. Biophys. Res. Commun., 290, 1499-1505.
    • (2002) Biochem. Biophys. Res. Commun. , vol.290 , pp. 1499-1505
    • Mizuno, Y.1
  • 18
    • 7344254106 scopus 로고    scopus 로고
    • A catalogue of imprinted genes and parent-of-origin effects in humans and animals
    • Morison, I.M. and Reeve, A.E. (1998) A catalogue of imprinted genes and parent-of-origin effects in humans and animals. Hum. Mol. Genet., 7, 1599-1609.
    • (1998) Hum. Mol. Genet. , vol.7 , pp. 1599-1609
    • Morison, I.M.1    Reeve, A.E.2
  • 19
    • 0035171016 scopus 로고    scopus 로고
    • The imprinted gene and parent-of-origin effect database
    • Morison, I.M. et al. (2001) The imprinted gene and parent-of-origin effect database. Nucleic Acids Res., 29, 275-276.
    • (2001) Nucleic Acids Res. , vol.29 , pp. 275-276
    • Morison, I.M.1
  • 20
    • 22144491132 scopus 로고    scopus 로고
    • A census of mammalian imprinting
    • Morison, I.M. et al. (2005) A census of mammalian imprinting. Trends Genet., 21, 457-465.
    • (2005) Trends Genet. , vol.21 , pp. 457-465
    • Morison, I.M.1
  • 21
    • 4043128071 scopus 로고    scopus 로고
    • Genetic analysis of genome-wide variation in human gene expression
    • Morley, M. et al. (2004) Genetic analysis of genome-wide variation in human gene expression. Nature, 430, 743-747.
    • (2004) Nature , vol.430 , pp. 743-747
    • Morley, M.1
  • 22
    • 0038362419 scopus 로고    scopus 로고
    • A new imprinted cluster on the human chromosome 7q21-q31, identified by human-mouse monochromosomal hybrids
    • Okita, C. et al. (2003) A new imprinted cluster on the human chromosome 7q21-q31, identified by human-mouse monochromosomal hybrids. Genomics, 81, 556-559.
    • (2003) Genomics , vol.81 , pp. 556-559
    • Okita, C.1
  • 23
    • 0036789519 scopus 로고    scopus 로고
    • Variation in gene expression within and among natural populations
    • Oleksiak, M.F. et al. (2002) Variation in gene expression within and among natural populations. Nat. Genet, 32, 261-266.
    • (2002) Nat. Genet. , vol.32 , pp. 261-266
    • Oleksiak, M.F.1
  • 24
    • 7444235907 scopus 로고    scopus 로고
    • Cis-acting regulatory variation in the human genome
    • Pastinen, T. and Hudson, T.J. (2004) Cis-acting regulatory variation in the human genome. Science, 306, 647-650.
    • (2004) Science , vol.306 , pp. 647-650
    • Pastinen, T.1    Hudson, T.J.2
  • 26
    • 0027425364 scopus 로고
    • Use of a novel system for defining a gene imprinting region
    • Rachmilewitz, J. et al. (1993) Use of a novel system for defining a gene imprinting region. Biochem. Biophys. Res. Commun., 196, 659-664.
    • (1993) Biochem. Biophys. Res. Commun. , vol.196 , pp. 659-664
    • Rachmilewitz, J.1
  • 27
    • 17744391429 scopus 로고    scopus 로고
    • Co-evolution of x-chromosome inactivation and imprinting in mammals
    • Reik, W. and Lewis, A. (2005) Co-evolution of x-chromosome inactivation and imprinting in mammals. Nat. Rev. Genet., 6, 403-410.
    • (2005) Nat. Rev. Genet , vol.6 , pp. 403-410
    • Reik, W.1    Lewis, A.2
  • 28
    • 22844457491 scopus 로고    scopus 로고
    • Dna methylation and human disease
    • Robertson, K.D. (2005) Dna methylation and human disease. Nat. Rev. Genet., 6, 597-610.
    • (2005) Nat. Rev. Genet. , vol.6 , pp. 597-610
    • Robertson, K.D.1
  • 29
    • 0036855185 scopus 로고    scopus 로고
    • Abundant raw material for cis-regulatory evolution in humans
    • Rockman, M.V. and Wray, G.A. (2002) Abundant raw material for cis-regulatory evolution in humans. Mol. Biol. Evol., 19, 1991-2004.
    • (2002) Mol. Biol. Evol. , vol.19 , pp. 1991-2004
    • Rockman, M.V.1    Wray, G.A.2
  • 30
    • 0037456823 scopus 로고    scopus 로고
    • Genetics of gene expression surveyed in maize, mouse and man
    • Schadt, E.E. et al. (2003) Genetics of gene expression surveyed in maize, mouse and man. Nature, 422, 297-302.
    • (2003) Nature , vol.422 , pp. 297-302
    • Schadt, E.E.1
  • 31
    • 0033405705 scopus 로고    scopus 로고
    • Facilitative glucose transporter expression in human cancer tissue
    • Smith, T.A. (1999) Facilitative glucose transporter expression in human cancer tissue. Br. J. Biomed. Sci., 56, 285-292.
    • (1999) Br. J. Biomed. Sci. , vol.56 , pp. 285-292
    • Smith, T.A.1
  • 32
    • 0042424602 scopus 로고    scopus 로고
    • Statistical significance for genomewide studies
    • Storey, J.D. and Tibshirani, R. (2003) Statistical significance for genomewide studies. Proc. Natl Acad. Sci. USA, 100, 9440-9445.
    • (2003) Proc. Natl Acad. Sci. USA , vol.100 , pp. 9440-9445
    • Storey, J.D.1    Tibshirani, R.2
  • 33
    • 0034011278 scopus 로고    scopus 로고
    • Biallelic expression of igfbp1 and igfbp3, two candidate genes for the Silver-Russell syndrome
    • Wakeling, E.L. et al. (2000) Biallelic expression of igfbp1 and igfbp3, two candidate genes for the Silver-Russell syndrome. J. Med. Genet., 37, 65-67.
    • (2000) J. Med. Genet. , vol.37 , pp. 65-67
    • Wakeling, E.L.1
  • 34
    • 19444361995 scopus 로고    scopus 로고
    • Genomic imprinting and methylation: Epigenetic canalization and conflict
    • Wilkins, J.F. (2005) Genomic imprinting and methylation: Epigenetic canalization and conflict. Trends Genet., 21, 356-365.
    • (2005) Trends Genet. , vol.21 , pp. 356-365
    • Wilkins, J.F.1
  • 35
    • 0037119584 scopus 로고    scopus 로고
    • Allelic variation in human gene expression
    • Yan, H. et al. (2002) Allelic variation in human gene expression. Science, 297, 1143.
    • (2002) Science , vol.297 , pp. 1143
    • Yan, H.1
  • 36
    • 0012804882 scopus 로고    scopus 로고
    • Computation method to identify differential allelic gene expression and novel imprinted genes
    • Yang, H.H. et al. (2003) Computation method to identify differential allelic gene expression and novel imprinted genes. Bioinformatics, 19, 952-955.
    • (2003) Bioinformatics , vol.19 , pp. 952-955
    • Yang, H.H.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.