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Volumn 29, Issue 14, 2010, Pages 2013-2023

Integrative molecular profiling of triple negative breast cancers identifies amplicon drivers and potential therapeutic targets

Author keywords

Comparative genomic hybridization; FGFR2; Gene expression; Microarrays; Triple negative breast cancer

Indexed keywords

1 TERT BUTYL 3 [6 (3,5 DIMETHOXYPHENYL) 2 (4 DIETHYLAMINOBUTYLAMINO)PYRIDO[2,3 D]PYRIMIDIN 7 YL]UREA; BUB3 PROTEIN; FIBROBLAST GROWTH FACTOR RECEPTOR 2; NOTCH3 RECEPTOR; PHOSPHATIDYLINOSITOL 3 KINASE; PKN1 PROTEIN; RAB20 PROTEIN; UNCLASSIFIED DRUG;

EID: 77950866696     PISSN: 09509232     EISSN: 14765594     Source Type: Journal    
DOI: 10.1038/onc.2009.489     Document Type: Article
Times cited : (339)

References (47)
  • 2
    • 34447276913 scopus 로고    scopus 로고
    • Pathological complete response in triple negative poorly differentiated invasive ductal breast carcinoma detected during pregnancy
    • Agrawal G, Chen JH, Baick CH, Chen AE, Mehta RS, Nalcioglu O et al. (2007). Pathological complete response in triple negative poorly differentiated invasive ductal breast carcinoma detected during pregnancy. J Clin Oncol 25: 2618-2620.
    • (2007) J Clin Oncol , vol.25 , pp. 2618-2620
    • Agrawal, G.1    Chen, J.H.2    Baick, C.H.3    Chen, A.E.4    Mehta, R.S.5    Nalcioglu, O.6
  • 3
    • 59449094654 scopus 로고    scopus 로고
    • Molecular characterization of breast cancer with highresolution oligonucleotide comparative genomic hybridization array
    • Andre F, Job B, Dessen P, Tordai A, Michiels S, Liedtke C et al. (2009). Molecular characterization of breast cancer with highresolution oligonucleotide comparative genomic hybridization array. Clin Cancer Res 15: 441-451.
    • (2009) Clin Cancer Res , vol.15 , pp. 441-451
    • Andre, F.1    Job, B.2    Dessen, P.3    Tordai, A.4    Michiels, S.5    Liedtke, C.6
  • 4
    • 0001677717 scopus 로고
    • Controlling the false discovery rate: A practical and powerful approach to multiple testing
    • Benjamini Y, Hochberg Y. (1995). Controlling the false discovery rate: a practical and powerful approach to multiple testing. J Roy Stat Soc 57: 289-300.
    • (1995) J Roy Stat Soc , vol.57 , pp. 289-300
    • Benjamini, Y.1    Hochberg, Y.2
  • 5
    • 52049083886 scopus 로고    scopus 로고
    • Characterization of the recurrent 8p11-12 amplicon identifies PPAPDC1B, a phosphatase protein, as a new therapeutic target in breast cancer
    • Bernard-Pierrot I, Gruel N, Stransky N, Vincent-Salomon A, Reyal F, Raynal V et al. (2008). Characterization of the recurrent 8p11-12 amplicon identifies PPAPDC1B, a phosphatase protein, as a new therapeutic target in breast cancer. Cancer Res 68: 7165-7175.
    • (2008) Cancer Res , vol.68 , pp. 7165-7175
    • Bernard-Pierrot, I.1    Gruel, N.2    Stransky, N.3    Vincent-Salomon, A.4    Reyal, F.5    Raynal, V.6
  • 7
    • 52049086201 scopus 로고    scopus 로고
    • Inhibition of activated fibroblast growth factor receptor 2 in endometrial cancer cells induces cell death despite PTEN abrogation
    • Byron SA, Gartside MG,Wellens CL, Mallon MA, Keenan JB, Powell MA et al. (2008). Inhibition of activated fibroblast growth factor receptor 2 in endometrial cancer cells induces cell death despite PTEN abrogation. Cancer Res 68: 6902-6907.
    • (2008) Cancer Res , vol.68 , pp. 6902-6907
    • Byron, S.A.1    Gartside, M.G.2    Wellens, C.L.3    Mallon, M.A.4    Keenan, J.B.5    Powell, M.A.6
  • 8
    • 33847063053 scopus 로고    scopus 로고
    • The triple negative paradox: Primary tumor chemosensitivity of breast cancer subtypes
    • Carey LA, Dees EC, Sawyer L, Gatti L, Moore DT, Collichio F et al. (2007). The triple negative paradox: primary tumor chemosensitivity of breast cancer subtypes. Clin Cancer Res 13: 2329-2334.
    • (2007) Clin Cancer Res , vol.13 , pp. 2329-2334
    • Carey, L.A.1    Dees, E.C.2    Sawyer, L.3    Gatti, L.4    Moore, D.T.5    Collichio, F.6
  • 10
    • 0021118703 scopus 로고
    • Quantitative analysis of dose-effect relationships: The combined effects of multiple drugs or enzyme inhibitors
    • Chou TC, Talalay P. (1984). Quantitative analysis of dose-effect relationships: the combined effects of multiple drugs or enzyme inhibitors. Adv Enzyme Regul 22: 27-55.
    • (1984) Adv Enzyme Regul , vol.22 , pp. 27-55
    • Chou, T.C.1    Talalay, P.2
  • 15
    • 43249123378 scopus 로고    scopus 로고
    • Heterogeneity of breast cancer associations with five susceptibility loci by clinical and pathological characteristics
    • Garcia-Closas M, Hall P, Nevanlinna H, Pooley K, Morrison J, Richesson DA et al. (2008). Heterogeneity of breast cancer associations with five susceptibility loci by clinical and pathological characteristics. PLoS Genet 4: e1000054.
    • (2008) PLoS Genet , vol.4
    • Garcia-Closas, M.1    Hall, P.2    Nevanlinna, H.3    Pooley, K.4    Morrison, J.5    Richesson, D.A.6
  • 17
    • 45349086985 scopus 로고    scopus 로고
    • Screening for copy-number alterations and loss of heterozygosity in chronic lymphocytic leukemia-a comparative study of four differently designed, high resolution microarray platforms
    • Gunnarsson R, Staaf J, Jansson M, Ottesen AM, Goransson H, Liljedahl U et al. (2008). Screening for copy-number alterations and loss of heterozygosity in chronic lymphocytic leukemia-a comparative study of four differently designed, high resolution microarray platforms. Genes Chromosomes Cancer 47: 697-711.
    • (2008) Genes Chromosomes Cancer , vol.47 , pp. 697-711
    • Gunnarsson, R.1    Staaf, J.2    Jansson, M.3    Ottesen, A.M.4    Goransson, H.5    Liljedahl, U.6
  • 18
    • 43049153163 scopus 로고    scopus 로고
    • DNA copy number alterations and expression of relevant genes in triple-negative breast cancer
    • Han W, Jung EM, Cho J, Lee JW, Hwang KT, Yang SJ et al. (2008). DNA copy number alterations and expression of relevant genes in triple-negative breast cancer. Genes Chromosomes Cancer 47: 490-499.
    • (2008) Genes Chromosomes Cancer , vol.47 , pp. 490-499
    • Han, W.1    Jung, E.M.2    Cho, J.3    Lee, J.W.4    Hwang, K.T.5    Yang, S.J.6
  • 20
    • 34248145042 scopus 로고    scopus 로고
    • Molecular subtypes of breast cancer in relation to paclitaxel response and outcomes in women with metastatic disease: Results from CALGB 9342
    • Harris LN, Broadwater G, Lin NU, Miron A, Schnitt SJ, Cowan D et al. (2006). Molecular subtypes of breast cancer in relation to paclitaxel response and outcomes in women with metastatic disease: results from CALGB 9342. Breast Cancer Res 8: R66.
    • (2006) Breast Cancer Res , vol.8
    • Harris, L.N.1    Broadwater, G.2    Lin, N.U.3    Miron, A.4    Schnitt, S.J.5    Cowan, D.6
  • 21
    • 33845291140 scopus 로고    scopus 로고
    • Novel patterns of genome rearrangement and their association with survival in breast cancer
    • Hicks J, Krasnitz A, Lakshmi B, Navin NE, Riggs M, Leibu E et al. (2006). Novel patterns of genome rearrangement and their association with survival in breast cancer. Genome Res 16: 1465-1479.
    • (2006) Genome Res , vol.16 , pp. 1465-1479
    • Hicks, J.1    Krasnitz, A.2    Lakshmi, B.3    Navin, N.E.4    Riggs, M.5    Leibu, E.6
  • 22
    • 33646874546 scopus 로고    scopus 로고
    • The molecular portraits of breast tumors are conserved across microarray platforms
    • Hu Z, Fan C, Oh DS, Marron JS, He X, Qaqish BF et al. (2006). The molecular portraits of breast tumors are conserved across microarray platforms. BMC Genomics 7: 96.
    • (2006) BMC Genomics , vol.7 , pp. 96
    • Hu, Z.1    Fan, C.2    Oh, D.S.3    Marron, J.S.4    He, X.5    Qaqish, B.F.6
  • 24
    • 24744468647 scopus 로고    scopus 로고
    • Distinct genomic profiles in hereditary breast tumors identified by array-based comparative genomic hybridization
    • Jonsson G, Naylor TL, Vallon-Christersson J, Staaf J, Huang J, Ward MR et al. (2005). Distinct genomic profiles in hereditary breast tumors identified by array-based comparative genomic hybridization. Cancer Res 65: 7612-7621.
    • (2005) Cancer Res , vol.65 , pp. 7612-7621
    • Jonsson, G.1    Naylor, T.L.2    Vallon-Christersson, J.3    Staaf, J.4    Huang, J.5    Ward, M.R.6
  • 25
    • 36549004041 scopus 로고    scopus 로고
    • Gene expression profiling and histopathological characterization of triple-negative/basal-like breast carcinomas
    • Kreike B, van Kouwenhove M, Horlings H, Weigelt B, Peterse H, Bartelink H et al. (2007). Gene expression profiling and histopathological characterization of triple-negative/basal-like breast carcinomas. Breast Cancer Res 9: R65.
    • (2007) Breast Cancer Res , vol.9
    • Kreike, B.1    Van Kouwenhove, M.2    Horlings, H.3    Weigelt, B.4    Peterse, H.5    Bartelink, H.6
  • 26
    • 33645326209 scopus 로고    scopus 로고
    • Unlocking pathology archives for molecular genetic studies: A reliable method to generate probes for chromogenic and fluorescent in situ hybridization
    • Lambros MB, Simpson PT, Jones C, Natrajan R, Westbury C, Steele D et al. (2006). Unlocking pathology archives for molecular genetic studies: a reliable method to generate probes for chromogenic and fluorescent in situ hybridization. Lab Invest 86: 398-408.
    • (2006) Lab Invest , vol.86 , pp. 398-408
    • Lambros, M.B.1    Simpson, P.T.2    Jones, C.3    Natrajan, R.4    Westbury, C.5    Steele, D.6
  • 27
    • 70449584755 scopus 로고    scopus 로고
    • A high-resolution integrated analysis of genetic and expression profiles of breast cancer cell lines
    • Mackay A, Tamber N, Fenwick K, Iravani M, Grigoriadis A, Dexter T et al. (2009). A high-resolution integrated analysis of genetic and expression profiles of breast cancer cell lines. Breast Cancer Res Treat 118: 481-498.
    • (2009) Breast Cancer Res Treat , vol.118 , pp. 481-498
    • MacKay, A.1    Tamber, N.2    Fenwick, K.3    Iravani, M.4    Grigoriadis, A.5    Dexter, T.6
  • 28
    • 51049109033 scopus 로고    scopus 로고
    • Identification and characterization of NVP-BEZ235, a new orally available dual phosphatidylinositol 3-kinase/mammalian target of rapamycin inhibitor with potent in vivo antitumor activity
    • Maira SM, Stauffer F, Brueggen J, Furet P, Schnell C, Fritsch C et al. (2008). Identification and characterization of NVP-BEZ235, a new orally available dual phosphatidylinositol 3-kinase/mammalian target of rapamycin inhibitor with potent in vivo antitumor activity. Mol Cancer Ther 7: 1851-1863.
    • (2008) Mol Cancer Ther , vol.7 , pp. 1851-1863
    • Maira, S.M.1    Stauffer, F.2    Brueggen, J.3    Furet, P.4    Schnell, C.5    Fritsch, C.6
  • 30
    • 0032531929 scopus 로고    scopus 로고
    • Crystal structure of an angiogenesis inhibitor bound to the FGF receptor tyrosine kinase domain
    • Mohammadi M, Froum S, Hamby JM, Schroeder MC, Panek RL, Lu GH et al. (1998). Crystal structure of an angiogenesis inhibitor bound to the FGF receptor tyrosine kinase domain. EMBO J 17: 5896-5904.
    • (1998) EMBO J , vol.17 , pp. 5896-5904
    • Mohammadi, M.1    Froum, S.2    Hamby, J.M.3    Schroeder, M.C.4    Panek, R.L.5    Lu, G.H.6
  • 32
    • 77953123909 scopus 로고    scopus 로고
    • An integrative genomic and transcriptomic analysis reveals molecular pathways and networks regulated by copy number aberrations in basal-like, HER2 and luminal cancers
    • (e-pub ahead of print 18 August 2009)
    • Natrajan R, Weigelt B, Mackay A, Geyer FC, Grigoriadis A, Tan DS et al. (2009b). An integrative genomic and transcriptomic analysis reveals molecular pathways and networks regulated by copy number aberrations in basal-like, HER2 and luminal cancers. Breast Cancer Res Treat (e-pub ahead of print 18 August 2009).
    • (2009) Breast Cancer Res Treat
    • Natrajan, R.1    Weigelt, B.2    MacKay, A.3    Geyer, F.C.4    Grigoriadis, A.5    Tan, D.S.6
  • 33
    • 33748622285 scopus 로고    scopus 로고
    • Defining ploidyspecific thresholds in array comparative genomic hybridization to improve the sensitivity of detection of single copy alterations in cell lines
    • Ng G, Huang J, Roberts I, Coleman N. (2006). Defining ploidyspecific thresholds in array comparative genomic hybridization to improve the sensitivity of detection of single copy alterations in cell lines. J Mol Diagn 8: 449-458.
    • (2006) J Mol Diagn , vol.8 , pp. 449-458
    • Ng, G.1    Huang, J.2    Roberts, I.3    Coleman, N.4
  • 34
    • 4644286709 scopus 로고    scopus 로고
    • Genomic and expression profiling of chromosome 17 in breast cancer reveals complex patterns of alterations and novel candidate genes
    • Orsetti B, Nugoli M, Cervera N, Lasorsa L, Chuchana P, Ursule L et al. (2004). Genomic and expression profiling of chromosome 17 in breast cancer reveals complex patterns of alterations and novel candidate genes. Cancer Res 64: 6453-6460.
    • (2004) Cancer Res , vol.64 , pp. 6453-6460
    • Orsetti, B.1    Nugoli, M.2    Cervera, N.3    Lasorsa, L.4    Chuchana, P.5    Ursule, L.6
  • 35
  • 37
    • 37248999372 scopus 로고    scopus 로고
    • Triple negative tumours: A critical review
    • Reis-Filho JS, Tutt AN. (2008). Triple negative tumours: a critical review. Histopathology 52: 108-118.
    • (2008) Histopathology , vol.52 , pp. 108-118
    • Reis-Filho, J.S.1    Tutt, A.N.2
  • 39
    • 34447552512 scopus 로고    scopus 로고
    • Getting it right: Designing microarray (and not 'microawry') comparative genomic hybridization studies for cancer research
    • Tan DS, LambrosMB, Natrajan R, Reis-Filho JS. (2007). Getting it right: designing microarray (and not 'microawry') comparative genomic hybridization studies for cancer research. Lab Invest 87: 737-754.
    • (2007) Lab Invest , vol.87 , pp. 737-754
    • Tan, D.S.1    Lambros, M.B.2    Natrajan, R.3    Reis-Filho, J.S.4
  • 40
    • 0034469902 scopus 로고    scopus 로고
    • Characterization of fibroblast growth factor receptor 2 overexpression in the human breast cancer cell line SUM-52PE
    • Tannheimer SL, Rehemtulla A, Ethier SP. (2000). Characterization of fibroblast growth factor receptor 2 overexpression in the human breast cancer cell line SUM-52PE. Breast Cancer Res 2: 311-320.
    • (2000) Breast Cancer Res , vol.2 , pp. 311-320
    • Tannheimer, S.L.1    Rehemtulla, A.2    Ethier, S.P.3
  • 41
    • 33646428682 scopus 로고    scopus 로고
    • The basal phenotype of BRCA1-related breast cancer: Past, present and future
    • Tischkowitz MD, Foulkes WD. (2006). The basal phenotype of BRCA1-related breast cancer: past, present and future. Cell Cycle 5: 963-967.
    • (2006) Cell Cycle , vol.5 , pp. 963-967
    • Tischkowitz, M.D.1    Foulkes, W.D.2
  • 42
    • 4944229642 scopus 로고    scopus 로고
    • Hallmarks of 'BRCAness' in sporadic cancers
    • Turner N, Tutt A, Ashworth A. (2004). Hallmarks of 'BRCAness' in sporadic cancers. Nat Rev Cancer 4: 814-819.
    • (2004) Nat Rev Cancer , vol.4 , pp. 814-819
    • Turner, N.1    Tutt, A.2    Ashworth, A.3
  • 43
    • 43249085571 scopus 로고    scopus 로고
    • A synthetic lethal siRNA screen identifying genes mediating sensitivity to a PARP inhibitor
    • Turner NC, Lord CJ, Iorns E, Brough R, Swift S, Elliott R et al. (2008). A synthetic lethal siRNA screen identifying genes mediating sensitivity to a PARP inhibitor. EMBO J 27: 1368-1377.
    • (2008) EMBO J , vol.27 , pp. 1368-1377
    • Turner, N.C.1    Lord, C.J.2    Iorns, E.3    Brough, R.4    Swift, S.5    Elliott, R.6
  • 44
    • 53149133527 scopus 로고    scopus 로고
    • Refinement of breast cancer classification by molecular characterization of histological special types
    • Weigelt B, Horlings HM, Kreike B, Hayes MM, Hauptmann M, Wessels LF et al. (2008). Refinement of breast cancer classification by molecular characterization of histological special types. J Pathol 216: 141-150.
    • (2008) J Pathol , vol.216 , pp. 141-150
    • Weigelt, B.1    Horlings, H.M.2    Kreike, B.3    Hayes, M.M.4    Hauptmann, M.5    Wessels, L.F.6
  • 45
    • 40949092796 scopus 로고    scopus 로고
    • NOTCH3 signaling pathway plays crucial roles in the proliferation of ErbB2-negative human breast cancer cells
    • Yamaguchi N, Oyama T, Ito E, Satoh H, Azuma S, Hayashi M et al. (2008). NOTCH3 signaling pathway plays crucial roles in the proliferation of ErbB2-negative human breast cancer cells. Cancer Res 68: 1881-1888.
    • (2008) Cancer Res , vol.68 , pp. 1881-1888
    • Yamaguchi, N.1    Oyama, T.2    Ito, E.3    Satoh, H.4    Azuma, S.5    Hayashi, M.6
  • 46
    • 31544469559 scopus 로고    scopus 로고
    • Increased expression of mitotic checkpoint genes in breast cancer cells with chromosomal instability
    • Yuan B, Xu Y, Woo JH, Wang Y, Bae YK, Yoon DS et al. (2006). Increased expression of mitotic checkpoint genes in breast cancer cells with chromosomal instability. Clin Cancer Res 12: 405-410.
    • (2006) Clin Cancer Res , vol.12 , pp. 405-410
    • Yuan, B.1    Xu, Y.2    Woo, J.H.3    Wang, Y.4    Bae, Y.K.5    Yoon, D.S.6
  • 47
    • 29444449785 scopus 로고    scopus 로고
    • The oncogenic properties of mutant p110alpha and p110beta phosphatidylinositol 3-kinases in human mammary epithelial cells
    • Zhao JJ, Liu Z, Wang L, Shin E, Loda MF, Roberts TM. (2005). The oncogenic properties of mutant p110alpha and p110beta phosphatidylinositol 3-kinases in human mammary epithelial cells. Proc Natl Acad Sci USA 102: 18443-18448.
    • (2005) Proc Natl Acad Sci USA , vol.102 , pp. 18443-18448
    • Zhao, J.J.1    Liu, Z.2    Wang, L.3    Shin, E.4    Loda, M.F.5    Roberts, T.M.6


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