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Volumn 47, Issue 8, 2008, Pages 697-711

Screening for copy-number alterations and loss of heterozygosity in chronic lymphocytic leukemia - A comparative study of four differently designed, high resolution microarray platforms

Author keywords

[No Author keywords available]

Indexed keywords

ADULT; AGED; ARTICLE; CHRONIC LYMPHATIC LEUKEMIA; CLINICAL ARTICLE; COMPARATIVE STUDY; DNA MICROARRAY; FEMALE; GENE MUTATION; GENETIC SCREENING; GENOME; HETEROZYGOSITY LOSS; HUMAN; HUMAN CELL; LEUKEMOGENESIS; MALE; MICROARRAY ANALYSIS; NOISE; PRIORITY JOURNAL; SINGLE NUCLEOTIDE POLYMORPHISM;

EID: 45349086985     PISSN: 10452257     EISSN: 10982264     Source Type: Journal    
DOI: 10.1002/gcc.20575     Document Type: Article
Times cited : (103)

References (45)
  • 4
    • 0029981025 scopus 로고    scopus 로고
    • National cancer institute-sponsored working group guidelines for chronic lymphocytic leukemia: Revised guidelines for diagnosis and treatment
    • Cheson BD, Bennett JM, Grever M, Kay N, Keating MJ, O'Brien S, Rai KR. 1996. National cancer institute-sponsored working group guidelines for chronic lymphocytic leukemia: Revised guidelines for diagnosis and treatment. Blood 87:4990-4997.
    • (1996) Blood , vol.87 , pp. 4990-4997
    • Cheson, B.D.1    Bennett, J.M.2    Grever, M.3    Kay, N.4    Keating, M.J.5    O'Brien, S.6    Rai, K.R.7
  • 7
    • 33751168475 scopus 로고    scopus 로고
    • Immunostimulatory oligonucleotide-induced metaphase cytogenetics detect chromosomal aberrations in 80% of CLL patients: A study of 132 CLL cases with correlation to FISH, IgVH status, and CD38 expression
    • Dicker F, Schnittger S, Haferlach T, Kern W, Schoch C. 2006. Immunostimulatory oligonucleotide-induced metaphase cytogenetics detect chromosomal aberrations in 80% of CLL patients: A study of 132 CLL cases with correlation to FISH, IgVH status, and CD38 expression. Blood 108:3152-3160.
    • (2006) Blood , vol.108 , pp. 3152-3160
    • Dicker, F.1    Schnittger, S.2    Haferlach, T.3    Kern, W.4    Schoch, C.5
  • 13
    • 36348953152 scopus 로고    scopus 로고
    • Comprehensive genetic characterization of CLL: A study on 506 cases analysed with chromosome banding analysis, interphase FISH, IgV(H) status and immunophenotyping
    • Haferlach C, Dicker F, Schnittger S, Kern W, Haferlach T. 2007. Comprehensive genetic characterization of CLL: A study on 506 cases analysed with chromosome banding analysis, interphase FISH, IgV(H) status and immunophenotyping. Leukemia 21:2442-2451.
    • (2007) Leukemia , vol.21 , pp. 2442-2451
    • Haferlach, C.1    Dicker, F.2    Schnittger, S.3    Kern, W.4    Haferlach, T.5
  • 15
    • 34548446814 scopus 로고    scopus 로고
    • Genome-wide copy number profiling on high-density bacterial artificial chromosomes, single-nucleotide polymorphisms, and oligonucleotide microarrays: A platform comparison based on statistical power analysis
    • Hehir-Kwa JY, Egmont-Petersen M, Janssen IM, Smeets D, van Kessel AG, Veltman JA. 2007. Genome-wide copy number profiling on high-density bacterial artificial chromosomes, single-nucleotide polymorphisms, and oligonucleotide microarrays: A platform comparison based on statistical power analysis. DNA Res 14:1-11.
    • (2007) DNA Res , vol.14 , pp. 1-11
    • Hehir-Kwa, J.Y.1    Egmont-Petersen, M.2    Janssen, I.M.3    Smeets, D.4    van Kessel, A.G.5    Veltman, J.A.6
  • 19
    • 34447309023 scopus 로고    scopus 로고
    • A 17q21.31 microduplication, reciprocal to the newly described 17q21.31 microdeletion, in a girl with severe psychomotor developmental delay and dysmorphic craniofacial features
    • Kirchhoff M, Bisgaard AM, Duno M, Hansen FJ, Schwartz M. 2007. A 17q21.31 microduplication, reciprocal to the newly described 17q21.31 microdeletion, in a girl with severe psychomotor developmental delay and dysmorphic craniofacial features. Eur J Med Genet 50:256-263.
    • (2007) Eur J Med Genet , vol.50 , pp. 256-263
    • Kirchhoff, M.1    Bisgaard, A.M.2    Duno, M.3    Hansen, F.J.4    Schwartz, M.5
  • 20
    • 33847663898 scopus 로고    scopus 로고
    • Combined array-comparative genomic hybridization and single-nucleotide polymorphism-loss of heterozygosity analysis reveals complex genetic alterations in cervical cancer
    • Kloth JN, Oosting J, van Wezel T, Szuhai K, Knijnenburg J, Gorter A, Renter GG, Fleuren GJ, Jordanova ES. 2007. Combined array-comparative genomic hybridization and single-nucleotide polymorphism-loss of heterozygosity analysis reveals complex genetic alterations in cervical cancer. BMC Genomics 8:53.
    • (2007) BMC Genomics , vol.8 , pp. 53
    • Kloth, J.N.1    Oosting, J.2    van Wezel, T.3    Szuhai, K.4    Knijnenburg, J.5    Gorter, A.6    Renter, G.G.7    Fleuren, G.J.8    Jordanova, E.S.9
  • 21
    • 34249733805 scopus 로고    scopus 로고
    • High-resolution genomic profiling of childhood ALL reveals novel recurrent genetic lesions affecting pathways involved in lymphocyte differentiation and cell cycle progression
    • Kuiper RP, Schoenmakers EFPM, Reijmersdal SVv, Hehir-Kwa JY, Kessel AGv, Leeuwen FNv, Hoogerbrugge PM. 2007. High-resolution genomic profiling of childhood ALL reveals novel recurrent genetic lesions affecting pathways involved in lymphocyte differentiation and cell cycle progression. Leukemia 21:1258-1266.
    • (2007) Leukemia , vol.21 , pp. 1258-1266
    • Kuiper, R.P.1    Schoenmakers, E.F.P.M.2    Reijmersdal, S.V.3    Hehir-Kwa, J.Y.4    Kessel, A.G.5    Leeuwen, F.N.6    Hoogerbrugge, P.M.7
  • 22
    • 27544483495 scopus 로고    scopus 로고
    • Comparative analysis of algorithms for identifying amplifications and deletions in array CGH data
    • Lai WR, Johnson MD, Kucherlapati R, Park PJ. 2005. Comparative analysis of algorithms for identifying amplifications and deletions in array CGH data. Bioinformatics 21:3763-3770.
    • (2005) Bioinformatics , vol.21 , pp. 3763-3770
    • Lai, W.R.1    Johnson, M.D.2    Kucherlapati, R.3    Park, P.J.4
  • 24
    • 2542548405 scopus 로고    scopus 로고
    • dChipSNP: Significance curve and clustering of SNP-array-based loss-of-heterozygosity data
    • Lin M, Wei LJ, Sellers WR, Lieberfarb M, Wong WH, Li C. 2004. dChipSNP: Significance curve and clustering of SNP-array-based loss-of-heterozygosity data. Bioinformatics 20:1233-1240.
    • (2004) Bioinformatics , vol.20 , pp. 1233-1240
    • Lin, M.1    Wei, L.J.2    Sellers, W.R.3    Lieberfarb, M.4    Wong, W.H.5    Li, C.6
  • 29
    • 30344454706 scopus 로고    scopus 로고
    • A genotype calling algorithm for affymetrix SNP arrays
    • Rabbee N, Speed TP. 2006. A genotype calling algorithm for affymetrix SNP arrays. Bioinformatics 22:7-12.
    • (2006) Bioinformatics , vol.22 , pp. 7-12
    • Rabbee, N.1    Speed, T.P.2
  • 30
    • 34548064529 scopus 로고    scopus 로고
    • Comprehensive analysis of copy number and allele status identifies multiple chromosome defects underlying follicular lymphoma pathogenesis
    • Ross CW, Ouillette PD, Saddler CM, Shedden KA, Malek SN. 2007. Comprehensive analysis of copy number and allele status identifies multiple chromosome defects underlying follicular lymphoma pathogenesis. Clin Cancer Res 13:4777-4785.
    • (2007) Clin Cancer Res , vol.13 , pp. 4777-4785
    • Ross, C.W.1    Ouillette, P.D.2    Saddler, C.M.3    Shedden, K.A.4    Malek, S.N.5
  • 36
    • 34047258036 scopus 로고    scopus 로고
    • Genome-wide loss of heterozygosity and copy number analysis in melanoma using high-density single-nucleotide polymorphism arrays
    • Stark M, Hayward N. 2007. Genome-wide loss of heterozygosity and copy number analysis in melanoma using high-density single-nucleotide polymorphism arrays. Cancer Res 67:2632-2642.
    • (2007) Cancer Res , vol.67 , pp. 2632-2642
    • Stark, M.1    Hayward, N.2
  • 38
    • 34848865991 scopus 로고    scopus 로고
    • High-resolution oligonucleotide array-CGH pinpoints genes involved in cryptic losses in chronic lymphocytic leukemia
    • Tyybakinoja A, Vilpo J, Knuutila S. 2007. High-resolution oligonucleotide array-CGH pinpoints genes involved in cryptic losses in chronic lymphocytic leukemia. Cytogenet Genome Res 118:8-12.
    • (2007) Cytogenet Genome Res , vol.118 , pp. 8-12
    • Tyybakinoja, A.1    Vilpo, J.2    Knuutila, S.3
  • 39
    • 33748190743 scopus 로고    scopus 로고
    • Integration of global SNP-based mapping and expression arrays reveals key regions, mechanisms, and genes important in the pathogenesis of multiple myeloma
    • Walker BA, Leone PE, Jenner MW, Li C, Gonzalez D, Johnson DC, Ross FM, Davies FE, Morgan GJ. 2006. Integration of global SNP-based mapping and expression arrays reveals key regions, mechanisms, and genes important in the pathogenesis of multiple myeloma. Blood 108:1733-1743.
    • (2006) Blood , vol.108 , pp. 1733-1743
    • Walker, B.A.1    Leone, P.E.2    Jenner, M.W.3    Li, C.4    Gonzalez, D.5    Johnson, D.C.6    Ross, F.M.7    Davies, F.E.8    Morgan, G.J.9
  • 40
    • 34147104969 scopus 로고    scopus 로고
    • A faster circular binary segmentation algorithm for the analysis of array CGH data
    • Venkatraman ES, Olshen AB. 2007. A faster circular binary segmentation algorithm for the analysis of array CGH data. Bioinformatics 23:657-663.
    • (2007) Bioinformatics , vol.23 , pp. 657-663
    • Venkatraman, E.S.1    Olshen, A.B.2
  • 42
    • 27944455289 scopus 로고    scopus 로고
    • A comparison study: Applying segmentation to array CGH data for downstream analyses
    • Willenbrock H, Fridlyand J. 2005. A comparison study: applying segmentation to array CGH data for downstream analyses. Bioinformatics 21:4084-4091.
    • (2005) Bioinformatics , vol.21 , pp. 4084-4091
    • Willenbrock, H.1    Fridlyand, J.2
  • 44
    • 0035841226 scopus 로고    scopus 로고
    • A statistical method for flagging weak spots improves normalization and ratio estimates in microarrays
    • Yang MC, Ruan QG, Yang JJ, Eckenrode S, Wu S, McIndoe RA, She JX. 2001. A statistical method for flagging weak spots improves normalization and ratio estimates in microarrays. Physiol Genomics 7:45-53.
    • (2001) Physiol Genomics , vol.7 , pp. 45-53
    • Yang, M.C.1    Ruan, Q.G.2    Yang, J.J.3    Eckenrode, S.4    Wu, S.5    McIndoe, R.A.6    She, J.X.7
  • 45
    • 32644441984 scopus 로고    scopus 로고
    • BAC to the future! or oligonucleotides: A perspective for micro array comparative genomic hybridization (array CGH)
    • Ylstra B, van den Ijssel P, Carvalho B, Brakenhoff RH, Meijer GA. 2006. BAC to the future! or oligonucleotides: a perspective for micro array comparative genomic hybridization (array CGH). Nucleic Acids Res 34:445-450.
    • (2006) Nucleic Acids Res , vol.34 , pp. 445-450
    • Ylstra, B.1    van den Ijssel, P.2    Carvalho, B.3    Brakenhoff, R.H.4    Meijer, G.A.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.