메뉴 건너뛰기




Volumn 70, Issue 7, 2010, Pages 2911-2923

Malignant Germ Cell Tumors Display Common MicroRNA Profiles Resulting in Global Changes in Expression of Messenger RNA Targets

Author keywords

[No Author keywords available]

Indexed keywords

MESSENGER RNA; MICRORNA;

EID: 77950839553     PISSN: 00085472     EISSN: 15387445     Source Type: Journal    
DOI: 10.1158/0008-5472.CAN-09-3301     Document Type: Article
Times cited : (236)

References (47)
  • 2
    • 49249104685 scopus 로고    scopus 로고
    • Pediatric malignant germ cell tumors show characteristic transcriptome profiles
    • Palmer RD, Barbosa-Morais NL, Gooding EL, et al. Pediatric malignant germ cell tumors show characteristic transcriptome profiles. Cancer Res 2008;68:4239-4247
    • (2008) Cancer Res , vol.68 , pp. 4239-4247
    • Palmer, R.D.1    Barbosa-Morais, N.L.2    Gooding, E.L.3
  • 3
    • 0001655829 scopus 로고
    • Classification of endodermal sinus tumour (mesoblatoma vitellinum) and so-called "embryonal carcinoma" of the ovary
    • Teilum G. Classification of endodermal sinus tumour (mesoblatoma vitellinum) and so-called "embryonal carcinoma" of the ovary. Acta Pathol Microbiol Scand 1965;64:407-429
    • (1965) Acta Pathol Microbiol Scand , vol.64 , pp. 407-429
    • Teilum, G.1
  • 4
    • 33645294070 scopus 로고    scopus 로고
    • Oncomirs-microRNAs with a role in cancer
    • Esquela-Kerscher A, Slack FJ. Oncomirs-microRNAs with a role in cancer. Nat Rev Cancer 2006;6:259-269
    • (2006) Nat Rev Cancer , vol.6 , pp. 259-269
    • Esquela-Kerscher, A.1    Slack, F.J.2
  • 5
    • 33645124258 scopus 로고    scopus 로고
    • Zebrafish MiR-430 promotes deadenylation and clearance of maternal mRNAs
    • Giraldez AJ, Mishima Y, Rihel J, et al. Zebrafish MiR-430 promotes deadenylation and clearance of maternal mRNAs. Science 2006;312: 75-79
    • (2006) Science , vol.312 , pp. 75-79
    • Giraldez, A.J.1    Mishima, Y.2    Rihel, J.3
  • 6
    • 1342288026 scopus 로고    scopus 로고
    • Affy - Analysis of Affymetrix GeneChip data at the probe level
    • DOI 10.1093/bioinformatics/btg405
    • 6. Gautier L, Cope L, Bolstad BM, Irizarry RA. affy-analysis of Affymetrix GeneChip data at the probe level. Bioinformatics 2004;20: 307-315 (Pubitemid 38262761)
    • (2004) Bioinformatics , vol.20 , Issue.3 , pp. 307-315
    • Gautier, L.1    Cope, L.2    Bolstad, B.M.3    Irizarry, R.A.4
  • 7
    • 13944282215 scopus 로고    scopus 로고
    • Microarray analysis shows that some microRNAs downregulate large numbers of target mRNAs
    • Lim LP, Lau NC, Garrett-Engele P, et al. Microarray analysis shows that some microRNAs downregulate large numbers of target mRNAs. Nature 2005;433:769-773
    • (2005) Nature , vol.433 , pp. 769-773
    • Lim, L.P.1    Lau, N.C.2    Garrett-Engele, P.3
  • 8
    • 33750370444 scopus 로고    scopus 로고
    • MicroRNA signatures in human cancers
    • Calin GA, Croce CM. MicroRNA signatures in human cancers. Nat Rev Cancer 2006;6:857-866
    • (2006) Nat Rev Cancer , vol.6 , pp. 857-866
    • Calin, G.A.1    Croce, C.M.2
  • 10
    • 11844278458 scopus 로고    scopus 로고
    • Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets
    • Lewis BP, Burge CB, Bartel DP. Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets. Cell 2005;120:15-20.
    • (2005) Cell , vol.120 , pp. 15-20
    • Lewis, B.P.1    Burge, C.B.2    Bartel, D.P.3
  • 11
    • 33749507943 scopus 로고    scopus 로고
    • A small piece in the cancer puzzle: MicroRNAs as tumor suppressors and oncogenes
    • Kent OA, Mendell JT. A small piece in the cancer puzzle: microRNAs as tumor suppressors and oncogenes. Oncogene 2006;25:6188-6196
    • (2006) Oncogene , vol.25 , pp. 6188-6196
    • Kent, O.A.1    Mendell, J.T.2
  • 12
    • 36649025655 scopus 로고    scopus 로고
    • OncomiRs: The discovery and progress of microRNAs in cancers
    • Cho WC OncomiRs: the discovery and progress of microRNAs in cancers. Mol Cancer 2007;6:60.
    • (2007) Mol Cancer , vol.6 , pp. 60
    • Cho, W.C.1
  • 13
    • 33846188098 scopus 로고    scopus 로고
    • MicroRNAs as oncogenes and tumor suppressors
    • DOI 10.1016/j.ydbio.2006.08.028, PII S0012160606010967
    • 13. Zhang B, Pan X, Cobb GP, Anderson TA. microRNAs as oncogenes and tumor suppressors. Dev Biol 2007;302:1-12. (Pubitemid 46096921)
    • (2007) Developmental Biology , vol.302 , Issue.1 , pp. 1-12
    • Zhang, B.1    Pan, X.2    Cobb, G.P.3    Anderson, T.A.4
  • 15
    • 33646056975 scopus 로고    scopus 로고
    • A genetic screen implicates miRNA-372 and miRNA-373 as oncogenes in testicular germ cell tumors
    • Voorhoeve PM, le Sage C, Schrier M, et al. A genetic screen implicates miRNA-372 and miRNA-373 as oncogenes in testicular germ cell tumors. Cell 2006;124:1169-1181
    • (2006) Cell , vol.124 , pp. 1169-1181
    • Voorhoeve, P.M.1    Le Sage, C.2    Schrier, M.3
  • 16
    • 57049175013 scopus 로고    scopus 로고
    • Detecting microRNA binding and siRNA off-target effects from expression data
    • van Dongen S, Abreu-Goodger C, Enright AJ. Detecting microRNA binding and siRNA off-target effects from expression data. Nat Methods 2008;5:1023-1025
    • (2008) Nat Methods , vol.5 , pp. 1023-1025
    • Van Dongen, S.1    Abreu-Goodger, C.2    Enright, A.J.3
  • 17
    • 0034934077 scopus 로고    scopus 로고
    • Short tandem repeat profiling provides an international reference standard for human cell lines
    • Masters JR, Thomson JA, Daly-Bums B, et al. Short tandem repeat profiling provides an international reference standard for human cell lines. Proc Natl Acad Sci U S A 2001;98:8012-8017
    • (2001) Proc Natl Acad Sci U S A , vol.98 , pp. 8012-8017
    • Masters, J.R.1    Thomson, J.A.2    Daly-Bums, B.3
  • 18
    • 53149153808 scopus 로고    scopus 로고
    • Germ cell tumors in children and adolescents
    • Agarwal BR, Perilongo G, Rogers P, Strahlendorf C, Eden OB, editors. 37th meeting of SIOP Eindhoven (the Netherlands): International Society of Paediatric Oncology
    • Calaminus G, Patte K. Germ cell tumors in children and adolescents. In: Agarwal BR, Perilongo G, Rogers P, Strahlendorf C, Eden OB, editors. Education Book, 37th meeting of SIOP Eindhoven (the Netherlands): International Society of Paediatric Oncology; 2005.
    • (2005) Education Book
    • Calaminus, G.1    Patte, K.2
  • 19
    • 1842647388 scopus 로고    scopus 로고
    • EbIe JN, Sauter G, Epstein Jl, Sesterhenn IA, editors. World Health Organization Classification of Tumours. Lyon: IARC Press
    • In: EbIe JN, Sauter G, Epstein Jl, Sesterhenn IA, editors. World Health Organization Classification of Tumours. Pathology and genetics of the urinary system and male genital organs. Lyon: IARC Press; 2004.
    • (2004) Pathology and Genetics of the Urinary System and Male Genital Organs.
  • 20
    • 34547114724 scopus 로고    scopus 로고
    • Global microRNA profiles in cervical squamous cell carcinoma depend on Drosha expression levels
    • Muralidhar B, Goldstein LD, Ng G, et al. Global microRNA profiles in cervical squamous cell carcinoma depend on Drosha expression levels. J Pathol 2007;212:368-377
    • (2007) J Pathol , vol.212 , pp. 368-377
    • Muralidhar, B.1    Goldstein, L.D.2    Ng, G.3
  • 21
    • 59549093642 scopus 로고    scopus 로고
    • ArrayQualityMetrics-a BioConductor package for quality assessment of microarray data
    • Kauffmann A, Gentleman R, Huber W. arrayQualityMetrics-a BioConductor package for quality assessment of microarray data. Bioinformatics 2009;25:415-416
    • (2009) Bioinformatics , vol.25 , pp. 415-416
    • Kauffmann, A.1    Gentleman, R.2    Huber, W.3
  • 22
    • 18744369640 scopus 로고    scopus 로고
    • Use of within-array replicate spots for assessing differential expression in microarray experiments
    • Smyth GK, Michaud J, Scott HS. Use of within-array replicate spots for assessing differential expression in microarray experiments. Bioinformatics 2005;21:2067-2075
    • (2005) Bioinformatics , vol.21 , pp. 2067-2075
    • Smyth, G.K.1    Michaud, J.2    Scott, H.S.3
  • 23
    • 0242333835 scopus 로고    scopus 로고
    • Normalization of cDNA microarray data
    • Smyth GK, Speed T. Normalization of cDNA microarray data. Methods 2003;31:265-273
    • (2003) Methods , vol.31 , pp. 265-273
    • Smyth, G.K.1    Speed, T.2
  • 24
    • 4544341015 scopus 로고    scopus 로고
    • Linear models and empirical Bayes methods for assessing differential expression in microarray experiments
    • Article 3
    • Smyth GK. Linear models and empirical Bayes methods for assessing differential expression in microarray experiments. Stat Appl Genet Mol Biol 2004;3:Article 3.
    • (2004) Stat Appl Genet Mol Biol , pp. 3
    • Smyth, G.K.1
  • 25
    • 0001677717 scopus 로고
    • Controlling the false discovery rate-a practical and powerful approach to multiple testing
    • Benjamini Y, Hochberg Y. Controlling the false discovery rate-a practical and powerful approach to multiple testing. J R Stat Soe Series B Stat Methodol 1995;57:289-300.
    • (1995) J R Stat Soe Series B Stat Methodol , vol.57 , pp. 289-300
    • Benjamini, Y.1    Hochberg, Y.2
  • 26
    • 31544440121 scopus 로고    scopus 로고
    • Down-regulation of stem cell genes, including those in a 200-kb gene cluster at 12p13.31, is associated with in vivo differentiation of human male germ cell tumors
    • Korkola JE, Houldsworth J, Chadalavada RS, et al. Down-regulation of stem cell genes, including those in a 200-kb gene cluster at 12p13.31, is associated with in vivo differentiation of human male germ cell tumors. Cancer Res 2006;66:820-827
    • (2006) Cancer Res , vol.66 , pp. 820-827
    • Korkola, J.E.1    Houldsworth, J.2    Chadalavada, R.S.3
  • 27
    • 0142121516 scopus 로고    scopus 로고
    • Exploration, normalization, and summaries of high density oligonucleotide array probe level data
    • Irizarry RA, Hobbs B, Collin F, et al. Exploration, normalization, and summaries of high density oligonucleotide array probe level data. Biostatistics 2003;4:249-264
    • (2003) Biostatistics , vol.4 , pp. 249-264
    • Irizarry, R.A.1    Hobbs, B.2    Collin, F.3
  • 28
    • 33846689706 scopus 로고    scopus 로고
    • Using GOstats to test gene lists for GO term association
    • Falcon S, Gentleman R. Using GOstats to test gene lists for GO term association. Bioinformatics 2007;23:257-258
    • (2007) Bioinformatics , vol.23 , pp. 257-258
    • Falcon, S.1    Gentleman, R.2
  • 30
    • 34347344010 scopus 로고    scopus 로고
    • Gain and overexpression of the oncostatin M receptor occur frequently in cervical squamous cell carcinoma and are associated with adverse clinicai outcome
    • Ng G, Winder D, Muralidhar B, et al. Gain and overexpression of the oncostatin M receptor occur frequently in cervical squamous cell carcinoma and are associated with adverse clinicai outcome. J Pathol 2007;212:325-334
    • (2007) J Pathol , vol.212 , pp. 325-334
    • Ng, G.1    Winder, D.2    Muralidhar, B.3
  • 31
    • 9144261128 scopus 로고    scopus 로고
    • 1-Mb resolution arraybased comparative genomic hybridization using a BAC clone set optimized for cancer gene analysis
    • Greshock J, Naylor TL, Margolin A, et al. 1-Mb resolution arraybased comparative genomic hybridization using a BAC clone set optimized for cancer gene analysis. Genome Res 2004;14:179-187
    • (2004) Genome Res , vol.14 , pp. 179-187
    • Greshock, J.1    Naylor, T.L.2    Margolin, A.3
  • 32
    • 20444460289 scopus 로고    scopus 로고
    • MicroRNA expression profiles classify human cancers
    • Lu J, Getz G, Miska EA, et al. MicroRNA expression profiles classify human cancers. Nature 2005;435:834-838
    • (2005) Nature , vol.435 , pp. 834-838
    • Lu, J.1    Getz, G.2    Miska, E.A.3
  • 33
    • 65649112882 scopus 로고    scopus 로고
    • Novel genomic amplification targeting the microRNA cluster at 19q13.42 in a pediatric embryonal tumor with abundant neuropil and true rosettes
    • Pfister S, Remke M, Castoldi M, et al. Novel genomic amplification targeting the microRNA cluster at 19q13.42 in a pediatric embryonal tumor with abundant neuropil and true rosettes. Acta Neuropathol 2009;117:457-464
    • (2009) Acta Neuropathol , vol.117 , pp. 457-464
    • Pfister, S.1    Remke, M.2    Castoldi, M.3
  • 34
    • 37549028759 scopus 로고    scopus 로고
    • MicroRNA expression pattern of undifferentiated and differentiated human embryonic stem cells
    • Lakshmipathy U, Love B, Goff LA, et al. MicroRNA expression pattern of undifferentiated and differentiated human embryonic stem cells. Stem Cells Dev 2007;16:1003-1016
    • (2007) Stem Cells Dev , vol.16 , pp. 1003-1016
    • Lakshmipathy, U.1    Love, B.2    Goff, L.A.3
  • 35
    • 55449089454 scopus 로고    scopus 로고
    • Embryonic stem cell-specific miR302-367 cluster: Human gene structure and functional characterization of its core promoter
    • Barroso-del Jesus A, Romero-Lopez C, Lucena-Aguilar G, et al. Embryonic stem cell-specific miR302-367 cluster: human gene structure and functional characterization of its core promoter. Mol Cell Biol 2008;28:6609-6619
    • (2008) Mol Cell Biol , vol.28 , pp. 6609-6619
    • Barroso-del Jesus, A.1    Romero-Lopez, C.2    Lucena-Aguilar, G.3
  • 36
    • 57149130694 scopus 로고    scopus 로고
    • MicroRNAs in embryonic stem cells and early embryonic development
    • Laurent LC MicroRNAs in embryonic stem cells and early embryonic development. J Cell Mol Med 2008;12:2181-2188
    • (2008) J Cell Mol Med , vol.12 , pp. 2181-2188
    • Laurent, L.C.1
  • 38
    • 2942534403 scopus 로고    scopus 로고
    • Human embryonic stem cells express a unique set of microRNAs
    • Suh MR, Lee Y, Kim JY, et al. Human embryonic stem cells express a unique set of microRNAs. Dev Biol 2004;270:488-498
    • (2004) Dev Biol , vol.270 , pp. 488-498
    • Suh, M.R.1    Lee, Y.2    Kim, J.Y.3
  • 39
    • 53549133376 scopus 로고    scopus 로고
    • Oct4/Sox2-regulated miR-302 targets cyclin D1 in human embryonic stem cells
    • Card DA, Hebbar PB, Li L, et al. Oct4/Sox2-regulated miR-302 targets cyclin D1 in human embryonic stem cells. Mol Cell Biol 2008;28: 6426-6438
    • (2008) Mol Cell Biol , vol.28 , pp. 6426-6438
    • Card, D.A.1    Hebbar, P.B.2    Li, L.3
  • 40
    • 48449084118 scopus 로고    scopus 로고
    • Connecting microRNA genes to the core transcriptional regulatory circuitry of embryonic stem cells
    • Marson A, Levine SS, Cole MF, et al. Connecting microRNA genes to the core transcriptional regulatory circuitry of embryonic stem cells. Cell 2008;134:521-533
    • (2008) Cell , vol.134 , pp. 521-533
    • Marson, A.1    Levine, S.S.2    Cole, M.F.3
  • 41
    • 67349149082 scopus 로고    scopus 로고
    • MicroRNA-145 regulates OCT4, SOX2, and KLF4 and represses pluripotency in human embryonic stem cells
    • Xu N, Papagiannakopoulos T, Pan G, Thomson JA, Kosik KS. MicroRNA-145 regulates OCT4, SOX2, and KLF4 and represses pluripotency in human embryonic stem cells. Cell 2009;137:647-658
    • (2009) Cell , vol.137 , pp. 647-658
    • Xu, N.1    Papagiannakopoulos, T.2    Pan, G.3    Thomson, J.A.4    Kosik, K.S.5
  • 42
    • 42949173880 scopus 로고    scopus 로고
    • Differential expression of SOX17 and SOX2 in germ cells and stem cells has biological and clinical implications
    • de Jong J, Stoop H, Gillis AJ, et al. Differential expression of SOX17 and SOX2 in germ cells and stem cells has biological and clinical implications. J Pathol 2008;215:21-30.
    • (2008) J Pathol , vol.215 , pp. 21-30
    • De Jong, J.1    Stoop, H.2    Gillis, A.J.3
  • 43
    • 66949163989 scopus 로고    scopus 로고
    • Human testicular (non)seminomatous germ cell tumours: The clinical implications of recent pathobiological insights
    • Looijenga LH. Human testicular (non)seminomatous germ cell tumours: the clinical implications of recent pathobiological insights. J Pathol 2009;218:146-162
    • (2009) J Pathol , vol.218 , pp. 146-162
    • Looijenga, L.H.1
  • 44
    • 65349170038 scopus 로고    scopus 로고
    • Differential expression of SOX2 and SOX17 in testicular germ cell tumors
    • Nonaka D. Differential expression of SOX2 and SOX17 in testicular germ cell tumors. Am J Clin Pathol 2009;131:731-736
    • (2009) Am J Clin Pathol , vol.131 , pp. 731-736
    • Nonaka, D.1
  • 45
    • 56749091922 scopus 로고    scopus 로고
    • Embryonic stem cell-specific microRNAs regulate the G1-S transition and promote rapid proliferation
    • Wang Y, Baskerville S, Shenoy A, Babiarz JE, Baehner L, Blelloch R. Embryonic stem cell-specific microRNAs regulate the G1-S transition and promote rapid proliferation. Nat Genet 2008;40: 1478-1483
    • (2008) Nat Genet , vol.40 , pp. 1478-1483
    • Wang, Y.1    Baskerville, S.2    Shenoy, A.3    Babiarz, J.E.4    Baehner, L.5    Blelloch, R.6
  • 46
    • 66249139268 scopus 로고    scopus 로고
    • Cell cycle regulation by MicroRNAs in embryonic stem cells
    • Wang Y, Blelloch R. Cell cycle regulation by MicroRNAs in embryonic stem cells. Cancer Res 2009;69:4093-4096
    • (2009) Cancer Res , vol.69 , pp. 4093-4096
    • Wang, Y.1    Blelloch, R.2
  • 47
    • 66249106716 scopus 로고    scopus 로고
    • Predicting microRNA targets and functions: Traps for the unwary
    • Ritchie W, Flamant S, Rasko JE. Predicting microRNA targets and functions: traps for the unwary. Nat Methods 2009;6:397-398
    • (2009) Nat Methods , vol.6 , pp. 397-398
    • Ritchie, W.1    Flamant, S.2    Rasko, J.E.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.