Proteomic identification of interactions between histones and plasma proteins: Implications for cytoprotection

Proteomics

Volumn 10, Issue 7, 2010, Pages 1484-1493

  Pemberton, Alan D ^a   Brown, Jeremy K ^a   Inglis, Neil F ^b  

^a UNIVERSITY OF EDINBURGH   (United Kingdom)

^b MOREDUN RESEARCH INSTITUTE   (United Kingdom)

Author keywords

Biomedicine; Cytoprotection; Extracellular histones; Heparin; Plasma

Indexed keywords

ALPHA 1 ANTITRYPSIN; ALPHA 2 MACROGLOBULIN; APOLIPOPROTEIN A1; APOLIPOPROTEIN A4; APOLIPOPROTEIN B100; APOLIPOPROTEIN C3; APOLIPOPROTEIN E; CERULOPLASMIN; CHONDROITIN SULFATE; CLUSTERIN; COMPLEMENT COMPONENT C1R; COMPLEMENT COMPONENT C1S; COMPLEMENT COMPONENT C3; COMPLEMENT COMPONENT C4A; EDETIC ACID; FIBRINOGEN; FIBRONECTIN; GLYCAN; HEPARIN; HISTONE; INTER ALPHA TRYPSIN INHIBITOR; KININOGEN; PLASMA PROTEIN; PREALBUMIN; PROTHROMBIN; SERUM ALBUMIN; THROMBOSPONDIN 1; VITRONECTIN;

AMINO ACID SEQUENCE; ANIMAL CELL; ANIMAL CELL CULTURE; ARTICLE; CELL PROTECTION; CROSS LINKING; CYTOTOXICITY; HUMAN; IN VITRO STUDY; IN VIVO STUDY; INTESTINE EPITHELIUM CELL; MOUSE; NONHUMAN; PRIORITY JOURNAL; PROTEIN AGGREGATION; PROTEIN ANALYSIS; PROTEIN PROTEIN INTERACTION; PROTEOMICS; THYMUS;

ANIMALS; BLOOD PROTEINS; CATTLE; CHEMICAL PRECIPITATION; CYTOPROTECTION; GLYCOSAMINOGLYCANS; HEPARIN; HISTONES; HUMANS; IMMOBILIZED PROTEINS; INFLAMMATION; MICE; PROTEIN INTERACTION MAPPING; PROTEOMICS; SEPHAROSE; THYMUS GLAND;

EID: 77950666255     PISSN: 16159853     EISSN: 16159861     Source Type: Journal    
DOI: 10.1002/pmic.200900818     Document Type: Article

References (45)

1. Luger, K., Mader, A. W., Richmond, R. K., Sargent, D. F., Richmond, T. J., Crystal structure of the nucleosome core particle at 2.8 A resolution. Nature 1997, 389, 251-260. (Pubitemid 27406632)
2. Tsunaka, Y., Kajlmura, N., Tate, S., Morikawa, K., Alteration of the nucleosomal DNA path In the crystal structure of a human nucleosome core particle. Nucleic Acids Res. 2005, 33, 3424-3434. (Pubitemid 41194485)
3. Berger, S. L., The complex language of chromatin regulation during transcription. Nature 2007, 447, 407-412. (Pubitemid 46816746)
4. Brinkmann, V., Reichard, U., Goosmann, C., Fauler, B. et al., Neutrophil extracellular traps kill bacteria. Science 2004, 303, 1532-1535. (Pubitemid 38314426)
5. Cho, J. H., Park, I. Y., Kim, H. S., Lee, W. T. et al., Cathepsin D produces antimicrobial peptide parasin I from histone H2A in the skin mucosa of fish. FASEB J. 2002, 16, 429-431.
6. Koo, Y. S., Kim, J. M., Park, I. Y., Yu, B. J. et al., Structureactivity relations of parasin I, a histone H2A-derived antimicrobial peptide. Peptides 2008, 29, 1102-1108.
7. Omenn, G. S., States, D. J., Adamski, M., Blackwell, T. W. et al., Overview of the HUPO Plasma Proteome Project: results from the pilot phase with 35 collaborating laboratories and multiple analytical groups, generating a core dataset of 3020 proteins and a publicly-available database. Proteomics 2005, 5, 3226-3245.
8. Mlttal, A., Mlddleditch, M., Rugglero, K., Buchanan, C. M. et al., The proteome of rodent mesenteric lymph. Am. J. Physiol. Gastrointest. Liver Physiol. 2008, 295, G895-G903.
9. Goldfinch, G. M., Smith, W. D., Irnrie, L, McLean, K. et al., The proteome of gastric lymph in normal and nematode Infected sheep. Proteomics 2008, 8, 1909-1918. (Pubitemid 351678292)
10. Waga, S., Tan, E. M., Rubin, R. L., Identification and isolation of soluble histones from bovine milk and serum. Biochem. J. 1987, 244, 675-682.
11. Holdenrieder, S., Stieber, P., Bodenmuller, H., Busch, M. et al., Circulating nucleosomes in serum. Ann. NY Acad. Sci. 2001, 945, 93-102.
12. Zeerleder, S., Zwart, B., Wuillemln, W. A., Aarden, L. A. et al., Elevated nucleosome levels in systemic inflammation and sepsis. Crit. Care. Med. 2003, 37, 1947-1951. (Pubitemid 36900748)
13. Müller, S., Dleker, J., Tincani, A., Meroni, P. L., Pathogenic anti-nucleosome antibodies. Lupus 2008, 77, 431-436.
14. Xu, J., Zhang, X., Pelayo, R., Monestier, M. et al., Extracellular histones are major mediators of death in sepsis. Nat. Med. 2009, 75, 1318-1321.
15. Jacobsen, F., Baraniskin, A., Mertens, J., Mittler, D. et al., Activity of histone H1.2 in infected burn wounds. J. Antimicrob. Chemother. 2005, 55, 735-741. (Pubitemid 40691854)
16. Kleine, T. J., Gladfelter, A., Lewis, P. N., Lewis, S. A., Histone-induced damage of a mammalian epithelium: the conductive effect. Am. J. Physiol. 1995, 268, C1114-C1125.
17. Currle, J. R., Chen-Hwang, M. C., Denman, R., Smedman, M. et al., Reduction of histone cytotoxicity by the Alzheimer beta-amyloid peptide precursor. Biochim. Biophys. Acta 1997, 7355, 248-258. (Pubitemid 27091381)
18. Class, R., Llndman, S., Fassbender, C., Leinenbach, H. P. et al., Histone H1 suppresses tumor growth of leukemia cells In vitro, ex vivo and in an animal model suggesting extracellular functions of histones. Am. J. Clin. Oncol. 1996, 19, 522-531. (Pubitemid 26314887)
19. Kleine, T. J., Lewis, P. N., Lewis, S. A., Histone-induced damage of a mammalian epithelium: the role of protein and membrane structure. Am. J. Physiol. 1997, 273, C1925-C1936. (Pubitemid 127797928)
20. Gonias, S. L, Pasqua, J. J., Greenberg, C., Plzzo, S. V., Precipitation of fibrinogen, fibrinogen degradation products and fibrin monomer by histone H3. Thromb. Res. 1985, 39, 97-116. (Pubitemid 15008444)
21. Furukawa, K., Bhavanandan, V. P., Preferential In vitro Interaction of fibronectin with histone H2A+H3. FEBS Lett. 1984, 763, 313-316.
22. Gonias, S. L, Feldman, S. R., Pratt, C. W., Pizzo, S. V., Conformation-specific precipitation of human alpha 2macroglobulin by divalent zinc or calf thymus histone H3. Arch. Biochem. Biophys. 1984, 233, 462-468.
23. Vidal, K., Grosjean, I., evillard, J. P., Gespach, C., Kaiserlian, D., Immortalization of mouse intestinal epithelial cells by the SV40-large T gene. Phenotypic and Immune characterization of the MODE-K cell line. J. Immunol. Methods 1993, 766, 63-73. (Pubitemid 23334150)
24. Shevchenko, A., WiIm, M., Vorm, O., Mann, M., Mass spectrometric sequencing of proteins silver-stained Polyacrylamide gels. Anal. Chem. 1996, 68, 850-858. (Pubitemid 26101214)
25. Batycka, M., Inglis, N. F., Cook, K., Adam, A. et al., Ultra-fast tandem mass spectrometry scanning combined with monolithic column liquid chromatography increases throughput in proteomic analysis. Rapid Commun. Mass Spectrom. 2006, 20, 2074-2080. (Pubitemid 44049032)
26. Taylor, G. K., Goodlett, D. R., Rules governing protein Identification by mass spectrometry. Rapid Commun. Mass Spectrom. 2005, 79, 3420.
27. Demidenko, O., Tsvetkova, S., Action of heparin on protein fractions of isolated nuclei and on their DNA content. Histochemistry 1978, 57, 265-271.
28. Stewart, G. J., Niewlarowski, S., Aggregation of fibrinogen and its degradation products by basic proteins. An electron microscope study. Thromb. Diath. Haemorrh. 1971, 25, 566-579.
29. Bristol, J. A., Ratcliffe, J. V., Roth, D. A., Jacobs, M. A. et al., Biosynthesis of prothrombin: intracellular localization of the vitamin K-dependent carboxylase and the sites of gammacarboxylation. Blood 1996, 88, 2585-2593.
30. Sim, E., Dodds, A. W., Goldin, A., Inhibition of the covalent binding reaction of complement component C4 by penicillamine, an anti-rheumatic agent. Biochem. J. 1989, 259, 415-419.
31. Kent, P. W., Hichens, M., Ward, P. F., Displacement fractionation of deoxyribonucleoproteins by heparin and dextran sulphate. Biochem. J. 1958, 68, 568-572.
32. Enghild, J. J., Thogersen, I. B., Cheng, F., Fransson, L. A. et al., Organization of the inter-alpha-inhibltor heavy chains on the chondroitin sulfate originating from Ser(10) of bikunin: posttranslational modification of lalphal-derived bikunin. Biochemistry 1999, 38, 11804-11813.
33. Mizon, C., Mairie, C., Balduyck, M., Hachulla, E., Mlzon, J., The chondroitin sulfate chain of bikunin-contalning proteins In the inter-alpha-inhibltor family increases in size In inflammatory diseases. Eur. J. Biochem. 2001, 268, 2717-2724.
34. Opal, S. M., Lim, Y. P., Siryaporn, E., Moldawer, L L. et al., Longitudinal studies of inter-alpha inhibitor proteins In severely septic patients: a potential clinical marker and mediator of severe sepsis. Crit. Care Med. 2007, 35, 387-392.
35. Wu, R., Cui, X., LIm, Y. P., Bendelja, K. et al., Delayed administration of human inter-alpha Inhibitor proteins reduces mortality in sepsis. Crit. Care Med. 2004, 32, 1747-1752.
36. Pereira, L F., Marco, F. M., Boimorto, R., Caturla, A. et al., Histones interact with anionic phospholipids with high avidity; its relevance for the binding of histone-antihistone immune complexes. Clin. Exp. Immunol. 1994, 97, 175-180.
37. Yang, L. Y., Kuksis, A., Myher, J. J., Similarities in surface lipids of chylomicrons from glyceryl and alkyl ester feeding: major components. Lipids 1991, 26, 806-818.
38. Skrzydlewski, Z., Low-density lipoprotein complexes with histones. Acta. Biol. Acad. Sci. Hung. 1976, 27, 291-297.
39. Skrzydlewski, Z., Worowski, K., Formation of insoluble low density lipoprotein (LDL) complexes with basic proteins in vitro and in walls of arteries changed by atheromatosis. Bull. Acad. Pol. Sci. Biol. 1977, 25, 70-77.
40. van Leuven, S. I., Franssen, R., Kastelein, J. J., Levi, M. et al., Systemic inflammation as a risk factor for atherothrombosis. Rheumatology (Oxford) 2008, 47, 3-7.
41. Nicholas, B., Skipp, P., Mould, R., Rennard, S. et al., Shotgun proteomic analysis of human-induced sputum. Proteomics 2006, 6, 4390-4401.
42. Persson, C. G., Erjefalt, J. S., Greift, L., Andersson, M. et al., Plasma-derived proteins in airway defence, disease and repair of epithelial Injury. Eur. Respir. J. 1998, 77, 958-970.
43. Voynow, J. A., Rubin, B. K., Mucins, mucus, and sputum. Chest 2009, 735, 505-512.
44. Tang, J. X., Wen, Q., Bennett, A., Kim, B. et al., Anionic poly(amino acid)s dissolve F-actin and DNA bundles, enhance DNase activity, and reduce the viscosity of cystic fibrosis sputum. Am. J. Physiol. Lung Cell Mol. Physiol. 2005, 289, L599-L605.
45. Broughton-Head, V. J., Shur, J., Carroll, M. P., Smith, J. R., Shute, J. K., Unfractionated heparin reduces the elasticity of sputum from patients with cystic fibrosis. Am. J. Physiol. Lung Cell. Mol. Physiol. 2007, 293, L1240-L1249. (Pubitemid 350159408)