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Volumn , Issue , 2009, Pages 131-136

Scalability studies of the BLASTn scan and ungapped extension functions

Author keywords

[No Author keywords available]

Indexed keywords

DNA ANALYSIS; EXTENSION FUNCTIONS; FUTURE GENERATIONS; GENERAL PURPOSE PROCESSORS; HIGH THROUGHPUT; LOW LATENCY; NON-TRIVIAL; SCALABLE DESIGN; STATE OF THE ART; SYSTEM DESIGN; TWO-DIMENSION;

EID: 77950513105     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1109/ReConFig.2009.60     Document Type: Conference Paper
Times cited : (4)

References (18)
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  • 2
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    • September
    • S. F. Altschul, T. L. Madden, A. A. Schäffer, J. Zhang, Z. Zhang, W. Miller, and D. J. Lipman, "Gapped blast and psi-blast: a new generation of protein database search programs." Nucleic Acids Res, vol.25, no.17, pp. 3389-3402, September 1997.
    • (1997) Nucleic Acids Res , vol.25 , Issue.17 , pp. 3389-3402
    • Altschul, S.F.1    Madden, T.L.2    Schäffer, A.A.3    Zhang, J.4    Zhang, Z.5    Miller, W.6    Lipman, D.J.7
  • 4
    • 0014757386 scopus 로고
    • A general method applicable to the search for similarities in the aminoacid sequence of two proteins
    • S. B. Needleman and C. D. Wunsch, "A general method applicable to the search for similarities in the aminoacid sequence of two proteins," Journal of Molecular Biology, vol.48, pp. 443-453, 1972.
    • (1972) Journal of Molecular Biology , vol.48 , pp. 443-453
    • Needleman, S.B.1    Wunsch, C.D.2
  • 5
    • 0019887799 scopus 로고
    • Identification of common molecular subsequences
    • T. Smith and M. S. Waterman, "Identification of common molecular subsequences," Journal of Molecular Biology, vol.147, pp. 195-197, 1981.
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    • Smith, T.1    Waterman, M.S.2
  • 8
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    • Fpga implementation of systolic sequence alignment
    • D. H. Department, D. T. Hoang, and D. P. Lopresti, "Fpga implementation of systolic sequence alignment," in FPL, 1992.
    • (1992) FPL
    • Department, D.H.1    Hoang, D.T.2    Lopresti, D.P.3
  • 9
    • 21144440801 scopus 로고    scopus 로고
    • A smith-waterman systolic cell
    • Springer
    • C. W. Yu, K. H. Kwong, K. H. Lee, and P. H. W. Leong, "A smith-waterman systolic cell," in FPL 2003. Springer, 2003, pp. 375-384.
    • (2003) FPL 2003 , pp. 375-384
    • Yu, C.W.1    Kwong, K.H.2    Lee, K.H.3    Leong, P.H.W.4
  • 12
    • 34548442821 scopus 로고    scopus 로고
    • A general reconfigurable architecture for the blast algorithm
    • E. Sotiriades and A. Dollas, "A general reconfigurable architecture for the blast algorithm," J. VLSI Signal Process. Syst., vol.48, no.3, pp. 189-208, 2007.
    • (2007) J. VLSI Signal Process. Syst. , vol.48 , Issue.3 , pp. 189-208
    • Sotiriades, E.1    Dollas, A.2
  • 13
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    • Families of fpga-based accelerators for blast algorithm with multi-seeds detection and parallel extension
    • Springer
    • F. Xia, Y. Dou, and J. Xu, "Families of fpga-based accelerators for blast algorithm with multi-seeds detection and parallel extension." in Communications in Computer and Information Science, vol.13. Springer, 2008, pp. 43-57.
    • (2008) Communications in Computer and Information Science , vol.13 , pp. 43-57
    • Xia, F.1    Dou, Y.2    Xu, J.3
  • 14
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    • Rcblast: Towards a portable, cost-effective open source hardware implementation
    • 2
    • K. Muriki, K. D. Underwood, and R. Sass, "Rcblast: Towards a portable, cost-effective open source hardware implementation," in IPDPS '05- Workshop 7, 2005, p. 196.2.
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  • 17
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  • 18
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    • Reconfigurable computing cluster (rcc) project: Investigating the feasibility of fpga-based petascale computing
    • R. Sass, W. V. Kritikos, A. G. Schmidt, S. Beeravolu, and P. Beeraka, "Reconfigurable computing cluster (rcc) project: Investigating the feasibility of fpga-based petascale computing." in FCCM, 2007, pp. 127-140.
    • (2007) FCCM , pp. 127-140
    • Sass, R.1    Kritikos, W.V.2    Schmidt, A.G.3    Beeravolu, S.4    Beeraka, P.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.