-
2
-
-
33847120428
-
FPGA based Architecture of DNA Sequence Comparison and Database Search
-
Rhodes, Greece, 25-29 April
-
E. Sotiriades, C. Kozanitis and A. Dollas, "FPGA based Architecture of DNA Sequence Comparison and Database Search," in Proceedings 20th International Parallel and Distributed Processing Symposium, IPDPS 2006, p. 193., at the 13th Reconfigurable Architectures Workshop (RAW 2006), Rhodes, Greece, 25-29 April, 2006
-
(2006)
Proceedings 20th International Parallel and Distributed Processing Symposium, IPDPS 2006, p. 193., at the 13th Reconfigurable Architectures Workshop (RAW 2006)
-
-
Sotiriades, E.1
Kozanitis, C.2
Dollas, A.3
-
3
-
-
33847149786
-
Some Initial Results on Hardware BLAST Acceleration, with a Reconfigurable Architecture
-
Rhodes, Greece, 25-29 April
-
E. Sotiriades, C. Kozanitis and A. Dollas, "Some Initial Results on Hardware BLAST Acceleration, with a Reconfigurable Architecture." in Proceedings 20th International Parallel and Distributed Processing Symposium, IPDPS 2006, p. 251, at the 5th IEEE International Workshop on High Performance Computational Biology (HiCOMB2006), Rhodes, Greece, 25-29 April, 2006.
-
(2006)
Proceedings 20th International Parallel and Distributed Processing Symposium, IPDPS 2006, p. 251, at the 5th IEEE International Workshop on High Performance Computational Biology (HiCOMB2006)
-
-
Sotiriades, E.1
Kozanitis, C.2
Dollas, A.3
-
4
-
-
33751435030
-
Rapid Phototyping of a System-on-a-Chip for the BLAST Algorithm Implementation
-
Chania, Greece, 14-16 June
-
E. Sotiriades, C. Kozanitis, G. Chrysos and A. Dollas, "Rapid Phototyping of a System-on-a-Chip for the BLAST Algorithm Implementation," in Proceedings, 17th International IEEE Workshop on Rapid System Prototyping RSP-2006, pp. 223-229, Computer Society, Chania, Greece, 14-16 June, 2006.
-
(2006)
Proceedings, 17th International IEEE Workshop on Rapid System Prototyping RSP-2006, pp. 223-229, Computer Society
-
-
Sotiriades, E.1
Kozanitis, C.2
Chrysos, G.3
Dollas, A.4
-
6
-
-
0014757386
-
A. General Method Applicable to the Search for Similarities in the Amino Acid Sequence of Two Proteins
-
S. B. Needleman and C. D.Wunsch, "A. General Method Applicable to the Search for Similarities in the Amino Acid Sequence of Two Proteins," J. Mol. Biol.., vol. 48, 1970, pp. 443-453.
-
(1970)
J. Mol. Biol
, vol.48
, pp. 443-453
-
-
Needleman, S.B.1
Wunsch, C.D.2
-
7
-
-
0019887799
-
Identification Of Common Molecular Subsequences
-
T. F. Smith and M. S. Waterman, "Identification Of Common Molecular Subsequences," J. Mol. Biol., vol. 147, 1981, pp. 195-197.
-
(1981)
J. Mol. Biol
, vol.147
, pp. 195-197
-
-
Smith, T.F.1
Waterman, M.S.2
-
8
-
-
0023989064
-
Improved tools for biological sequence analysis
-
W. Pearson and D. Lipman, "Improved tools for biological sequence analysis," Proc Natl. Acad. Sci USA, vol. 85, 1988, pp. 2444-2448.
-
(1988)
Proc Natl. Acad. Sci USA
, vol.85
, pp. 2444-2448
-
-
Pearson, W.1
Lipman, D.2
-
9
-
-
0025183708
-
Basic Local Alignment Search Tool
-
S. Altschul et al., "Basic Local Alignment Search Tool," J. Mol. Biol., vol. 215, 1990, pp. 403-410.
-
(1990)
J. Mol. Biol
, vol.215
, pp. 403-410
-
-
Altschul, S.1
-
10
-
-
34548381880
-
-
C. P. Sosa et al., Some Practical Suggestions for Performing NCBI BLAST Benchmarks on a pSeries ™ 690 System, available at http://www.redbooks.ibm.com/abstracts/redp0437.html?.
-
C. P. Sosa et al., "Some Practical Suggestions for Performing NCBI BLAST Benchmarks on a pSeries ™ 690 System," available at http://www.redbooks.ibm.com/abstracts/redp0437.html?.
-
-
-
-
11
-
-
34548462715
-
Performance Characterization of BLAST on 32-bit and. 64-bit Dell PowerEdge Servers
-
February
-
R. Radahakrishnan, R. Ali, G. Kochhar, K. Chadalavada and R. Rajagopalan, "Performance Characterization of BLAST on 32-bit and. 64-bit Dell PowerEdge Servers," Dell Power Solutions, February 2005.
-
(2005)
Dell Power Solutions
-
-
Radahakrishnan, R.1
Ali, R.2
Kochhar, G.3
Chadalavada, K.4
Rajagopalan, R.5
-
12
-
-
85029593972
-
FPGA Implementation of Systolic Sequence Alignment
-
D. Hoang et al., "FPGA Implementation of Systolic Sequence Alignment," in Proceedings of the 2nd International Workshop on Field-Programmable Logic and Applications, Lecture Notes in Computer Science, vol. 705, 1992, pp. 183-191.
-
(1992)
Proceedings of the 2nd International Workshop on Field-Programmable Logic and Applications, Lecture Notes in Computer Science
, vol.705
, pp. 183-191
-
-
Hoang, D.1
-
14
-
-
79955148936
-
Gene Matching Using Jbits
-
S. Guccione and Eric Keller, "Gene Matching Using Jbits," in Proceedings of the 12th International Conference on Field-Programmable Logic and Applications, Lecture Notes In Computer Science, vol. 2438, 2002, pp. 1168-1171.
-
(2002)
Proceedings of the 12th International Conference on Field-Programmable Logic and Applications, Lecture Notes In Computer Science
, vol.2438
, pp. 1168-1171
-
-
Guccione, S.1
Keller, E.2
-
15
-
-
33751421158
-
A. Run-Time Reconfigurable System for Gene-Sequence Searching
-
New Delhi
-
K. Puttegowda et al., "A. Run-Time Reconfigurable System for Gene-Sequence Searching," in Proceedings 16th International Conference on VLSI Design, New Delhi, 2003, pp. 561-566.
-
(2003)
Proceedings 16th International Conference on VLSI Design
, pp. 561-566
-
-
Puttegowda, K.1
-
16
-
-
30344460642
-
Reconfigurable Architectures for Bio-sequence Database Scanning on. FPGAs
-
T. Oliver, B. Schmidt and D. Maskel, "Reconfigurable Architectures for Bio-sequence Database Scanning on. FPGAs," IEEE Trans. Circuits Syst. II, vol. 52, no. 12, 2005, pp. 851-855.
-
(2005)
IEEE Trans. Circuits Syst. II
, vol.52
, Issue.12
, pp. 851-855
-
-
Oliver, T.1
Schmidt, B.2
Maskel, D.3
-
18
-
-
34547398086
-
Single Pass, BLAST-Like, Approximate String Matching on FPGAs
-
M. C. Herbordt, J. Model, Y. Gu, B. Sukhwani, and T. VanCourt, "Single Pass, BLAST-Like, Approximate String Matching on FPGAs," in 14th Annual IEEE Symposium on Field-Programmable Custom Computing Machines (FCCM'06), 2006, pp. 217-226.
-
(2006)
14th Annual IEEE Symposium on Field-Programmable Custom Computing Machines (FCCM'06)
, pp. 217-226
-
-
Herbordt, M.C.1
Model, J.2
Gu, Y.3
Sukhwani, B.4
VanCourt, T.5
-
19
-
-
34548417302
-
-
University of California at Berkeley, California
-
C. Chang, "BLAST Implementation on BEE2," University of California at Berkeley, California, 2004.
-
(2004)
BLAST Implementation on BEE2
-
-
Chang, C.1
-
20
-
-
0000227930
-
Reconfigurable Computing: A Survey of Systems and Software
-
K. Compton, S. Hauck, "Reconfigurable Computing: A Survey of Systems and Software," ACM Comput. Surv., vol. 34, no. 2, 2002, pp. 171-210.
-
(2002)
ACM Comput. Surv
, vol.34
, Issue.2
, pp. 171-210
-
-
Compton, K.1
Hauck, S.2
-
22
-
-
43749113173
-
Seed-based Genomic Sequence Comparison using a FPGA/FLASH Accelerator
-
D. Lavenier, L. Xinchun, and G. Georges, "Seed-based Genomic Sequence Comparison using a FPGA/FLASH Accelerator," in Proceedings of IEEE International Conference on Field Programmable Technology (FPT '06), 2006, pp. 41-48.
-
(2006)
Proceedings of IEEE International Conference on Field Programmable Technology (FPT '06)
, pp. 41-48
-
-
Lavenier, D.1
Xinchun, L.2
Georges, G.3
-
23
-
-
11244355264
-
Biosequence Similarity Search on the Mercury System
-
September
-
P. Krishnamurthy, J. Buhler, R. Chamberlain, M. Franklin, K. Gyang and J. Lancaster, "Biosequence Similarity Search on the Mercury System," in Proc: of the IEEE 15th Int'l Conf. on Application-Specific Systems, Architectures and Processors, September 2004, pp. 365-375.
-
(2004)
Proc: Of the IEEE 15th Int'l Conf. on Application-Specific Systems, Architectures and Processors
, pp. 365-375
-
-
Krishnamurthy, P.1
Buhler, J.2
Chamberlain, R.3
Franklin, M.4
Gyang, K.5
Lancaster, J.6
-
24
-
-
35148887857
-
Acceleration of Ungapped Extension in Mercury BLAST
-
Barcelona, Spain, November 12
-
J. Lancaster, J. Buhler, R. Chamberlain, "Acceleration of Ungapped Extension in Mercury BLAST," in 7th workshop on media and streaming processors, Barcelona, Spain, November 12, 2005.
-
(2005)
7th workshop on media and streaming processors
-
-
Lancaster, J.1
Buhler, J.2
Chamberlain, R.3
|