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Volumn , Issue , 2009, Pages 88-95

RC-BLASTn: Implementation and evaluation of the BLASTn Scan function

Author keywords

[No Author keywords available]

Indexed keywords

CRITICAL SECTIONS; FPGA CHIPS; FPGA-BASED HARDWARE IMPLEMENTATION; GENOME SEQUENCES; HARDWARE COMPONENTS; SHORT SEQUENCES; SOFTWARE RUN; SUBJECT DATABASE;

EID: 74349126648     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1109/FCCM.2009.15     Document Type: Conference Paper
Times cited : (15)

References (19)
  • 5
    • 34547398086 scopus 로고    scopus 로고
    • Single pass, blast-like, approximate string matching on fpgas
    • M. C. Herbordt, J. Model, Y. Gu, B. Sukhwani, and T. V. Court. Single pass, blast-like, approximate string matching on fpgas. In FCCM, pages 217-226, 2006.
    • (2006) FCCM , pp. 217-226
    • Herbordt, M.C.1    Model, J.2    Gu, Y.3    Sukhwani, B.4    Court, T.V.5
  • 12
    • 33746291611 scopus 로고    scopus 로고
    • K. Muriki, K. D. Underwood, and R. Sass. Rc-blast: Towards a portable, cost-effective open source hardware implementation. In IPDPS '05: Proceedings of the 19th IEEE International Parallel and Distributed Processing Symposium (IPDPS'05) - Workshop 7, page 196.2, 2005.
    • K. Muriki, K. D. Underwood, and R. Sass. Rc-blast: Towards a portable, cost-effective open source hardware implementation. In IPDPS '05: Proceedings of the 19th IEEE International Parallel and Distributed Processing Symposium (IPDPS'05) - Workshop 7, page 196.2, 2005.
  • 13
    • 0014757386 scopus 로고
    • A general method applicable to the search for similarities in the amino-acid sequence of two proteins
    • S. B. Needleman and C. D. Wunsch. A general method applicable to the search for similarities in the amino-acid sequence of two proteins. Journal of Molecular Biology, 48:443-453, 1972.
    • (1972) Journal of Molecular Biology , vol.48 , pp. 443-453
    • Needleman, S.B.1    Wunsch, C.D.2
  • 14
    • 0019887799 scopus 로고
    • Identification of common molecular subsequences
    • T. Smith and M. S. Waterman. Identification of common molecular subsequences. Journal of Molecular Biology, 147:195-197, 1981.
    • (1981) Journal of Molecular Biology , vol.147 , pp. 195-197
    • Smith, T.1    Waterman, M.S.2
  • 16
    • 34548442821 scopus 로고    scopus 로고
    • A general reconfigurable architecture for the blast algorithm
    • E. Sotiriades and A. Dollas. A general reconfigurable architecture for the blast algorithm. J. VLSI Signal Process. Syst., 48(3):189-208, 2007.
    • (2007) J. VLSI Signal Process. Syst , vol.48 , Issue.3 , pp. 189-208
    • Sotiriades, E.1    Dollas, A.2
  • 17
    • 45449083047 scopus 로고    scopus 로고
    • Parallel dna sequence alignment on the cell broadband engine
    • R. Wyrzykowski, J. Dongarra, K. Karczewski, and J. Wasniewski, editors, PPAM, of, Springer
    • A. Wirawan, K. C. Keong, and B. Schmidt. Parallel dna sequence alignment on the cell broadband engine. In R. Wyrzykowski, J. Dongarra, K. Karczewski, and J. Wasniewski, editors, PPAM, volume 4967 of Lecture Notes in Computer Science, pages 1249-1256. Springer, 2007.
    • (2007) Lecture Notes in Computer Science , vol.4967 , pp. 1249-1256
    • Wirawan, A.1    Keong, K.C.2    Schmidt, B.3
  • 18
    • 74349092757 scopus 로고    scopus 로고
    • Time logic biocomputing solutions
    • www.timelogic.com. Time logic biocomputing solutions.
  • 19
    • 77950491511 scopus 로고    scopus 로고
    • F. Xia, Y. Dou, and J. Xu. Families of fpga-based accelerators for blast algorithm with multi-seeds detection and parallel extension. In M. Elloumi, J. Kng, M. Linial, R. F. Murphy, K. Schneider, and C. Toma, editors, BIRD, 13 of Communications in Computer and Information Science, pages 43-57. Springer, 2008.
    • F. Xia, Y. Dou, and J. Xu. Families of fpga-based accelerators for blast algorithm with multi-seeds detection and parallel extension. In M. Elloumi, J. Kng, M. Linial, R. F. Murphy, K. Schneider, and C. Toma, editors, BIRD, volume 13 of Communications in Computer and Information Science, pages 43-57. Springer, 2008.


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.