메뉴 건너뛰기




Volumn 11, Issue 1, 2010, Pages

Comparative genomic analysis of the zebra finch degradome provides new insights into evolution of proteases in birds and mammals

Author keywords

[No Author keywords available]

Indexed keywords

ACROSIN; AZUROCIDIN; BETA SECRETASE; CASPASE; CASPASE 3; CATHEPSIN; COMPLEMENT FACTOR D; DEGRADOME; GRANZYME; KALLIKREIN; LEGUMAIN; LEUKOCYTE ELASTASE; MATRIX METALLOPROTEINASE; MATRIX METALLOPROTEINASE 20; MYELOBLASTIN; PEPSINOGEN; PROTEINASE; SERINE PROTEINASE; TRYPTASE; UNCLASSIFIED DRUG; AVIAN PROTEIN; PEPTIDE HYDROLASE;

EID: 77950482175     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/1471-2164-11-220     Document Type: Article
Times cited : (25)

References (37)
  • 1
    • 58149178573 scopus 로고    scopus 로고
    • The Degradome database: mammalian proteases and diseases of proteolysis
    • 10.1093/nar/gkn570, 2686449, 18776217
    • Quesada V, Ordonez GR, Sanchez LM, Puente XS, Lopez-Otin C. The Degradome database: mammalian proteases and diseases of proteolysis. Nucleic Acids Res 2009, 37:D239-243. 10.1093/nar/gkn570, 2686449, 18776217.
    • (2009) Nucleic Acids Res , vol.37
    • Quesada, V.1    Ordonez, G.R.2    Sanchez, L.M.3    Puente, X.S.4    Lopez-Otin, C.5
  • 2
    • 57649155302 scopus 로고    scopus 로고
    • Proteases: multifunctional enzymes in life and disease
    • 10.1074/jbc.R800035200, 2576539, 18650443
    • Lopez-Otin C, Bond JS. Proteases: multifunctional enzymes in life and disease. J Biol Chem 2008, 283:30433-30437. 10.1074/jbc.R800035200, 2576539, 18650443.
    • (2008) J Biol Chem , vol.283 , pp. 30433-30437
    • Lopez-Otin, C.1    Bond, J.S.2
  • 3
    • 0036302814 scopus 로고    scopus 로고
    • Protease degradomics: a new challenge for proteomics
    • 10.1038/nrm858, 12094217
    • Lopez-Otin C, Overall CM. Protease degradomics: a new challenge for proteomics. Nat Rev Mol Cell Biol 2002, 3:509-519. 10.1038/nrm858, 12094217.
    • (2002) Nat Rev Mol Cell Biol , vol.3 , pp. 509-519
    • Lopez-Otin, C.1    Overall, C.M.2
  • 4
    • 28644432882 scopus 로고    scopus 로고
    • Comparative genomic analysis of human and chimpanzee proteases
    • 10.1016/j.ygeno.2005.07.009, 16162398
    • Puente XS, Gutierrez-Fernandez A, Ordonez GR, Hillier LW, Lopez-Otin C. Comparative genomic analysis of human and chimpanzee proteases. Genomics 2005, 86:638-647. 10.1016/j.ygeno.2005.07.009, 16162398.
    • (2005) Genomics , vol.86 , pp. 638-647
    • Puente, X.S.1    Gutierrez-Fernandez, A.2    Ordonez, G.R.3    Hillier, L.W.4    Lopez-Otin, C.5
  • 5
    • 0347445722 scopus 로고    scopus 로고
    • A genomic analysis of rat proteases and protease inhibitors
    • 10.1101/gr.1946304, 383305, 15060002
    • Puente XS, Lopez-Otin C. A genomic analysis of rat proteases and protease inhibitors. Genome Res 2004, 14:609-622. 10.1101/gr.1946304, 383305, 15060002.
    • (2004) Genome Res , vol.14 , pp. 609-622
    • Puente, X.S.1    Lopez-Otin, C.2
  • 6
    • 0037803570 scopus 로고    scopus 로고
    • Human and mouse proteases: a comparative genomic approach
    • 10.1038/nrg1111, 12838346
    • Puente XS, Sanchez LM, Overall CM, Lopez-Otin C. Human and mouse proteases: a comparative genomic approach. Nat Rev Genet 2003, 4:544-558. 10.1038/nrg1111, 12838346.
    • (2003) Nat Rev Genet , vol.4 , pp. 544-558
    • Puente, X.S.1    Sanchez, L.M.2    Overall, C.M.3    Lopez-Otin, C.4
  • 7
    • 47149086612 scopus 로고    scopus 로고
    • Loss of genes implicated in gastric function during platypus evolution
    • 10.1186/gb-2008-9-5-r81, 2441467, 18482448
    • Ordonez GR, Hillier LW, Warren WC, Grutzner F, Lopez-Otin C, Puente XS. Loss of genes implicated in gastric function during platypus evolution. Genome Biol 2008, 9:R81. 10.1186/gb-2008-9-5-r81, 2441467, 18482448.
    • (2008) Genome Biol , vol.9
    • Ordonez, G.R.1    Hillier, L.W.2    Warren, W.C.3    Grutzner, F.4    Lopez-Otin, C.5    Puente, X.S.6
  • 8
    • 3242723927 scopus 로고    scopus 로고
    • The road we travelled: discovery, choreography, and significance of brain replaceable neurons
    • 10.1196/annals.1298.027, 15313798
    • Nottebohm F. The road we travelled: discovery, choreography, and significance of brain replaceable neurons. Ann N Y Acad Sci 2004, 1016:628-658. 10.1196/annals.1298.027, 15313798.
    • (2004) Ann N Y Acad Sci , vol.1016 , pp. 628-658
    • Nottebohm, F.1
  • 9
    • 63849324192 scopus 로고    scopus 로고
    • Individually variable energy management during egg production is repeatable across breeding attempts
    • 10.1242/jeb.026815, 19329743
    • Williams TD, Vezina F, Speakman JR. Individually variable energy management during egg production is repeatable across breeding attempts. J Exp Biol 2009, 212:1101-1105. 10.1242/jeb.026815, 19329743.
    • (2009) J Exp Biol , vol.212 , pp. 1101-1105
    • Williams, T.D.1    Vezina, F.2    Speakman, J.R.3
  • 10
    • 51549109715 scopus 로고    scopus 로고
    • Sex-specific variability in the immune system across life-history stages
    • 10.1086/589521, 18665797
    • Love OP, Salvante KG, Dale J, Williams TD. Sex-specific variability in the immune system across life-history stages. Am Nat 2008, 172:E99-112. 10.1086/589521, 18665797.
    • (2008) Am Nat , vol.172
    • Love, O.P.1    Salvante, K.G.2    Dale, J.3    Williams, T.D.4
  • 11
    • 37749030247 scopus 로고    scopus 로고
    • A phylogenetic and functional overview of inflammatory caspases and caspase-1-related CARD-only proteins
    • 10.1042/BST0351508, 18031255
    • Kersse K, Vanden T, Lamkanfi M, Vandenabeele P. A phylogenetic and functional overview of inflammatory caspases and caspase-1-related CARD-only proteins. Biochem Soc Trans 2007, 35:1508-1511. 10.1042/BST0351508, 18031255.
    • (2007) Biochem Soc Trans , vol.35 , pp. 1508-1511
    • Kersse, K.1    Vanden, T.2    Lamkanfi, M.3    Vandenabeele, P.4
  • 12
    • 46649096691 scopus 로고    scopus 로고
    • Identification of novel mammalian caspases reveals an important role of gene loss in shaping the human caspase repertoire
    • 10.1093/molbev/msn012, 18281271
    • Eckhart L, Ballaun C, Hermann M, VandeBerg JL, Sipos W, Uthman A, Fischer H, Tschachler E. Identification of novel mammalian caspases reveals an important role of gene loss in shaping the human caspase repertoire. Mol Biol Evol 2008, 25:831-841. 10.1093/molbev/msn012, 18281271.
    • (2008) Mol Biol Evol , vol.25 , pp. 831-841
    • Eckhart, L.1    Ballaun, C.2    Hermann, M.3    VandeBerg, J.L.4    Sipos, W.5    Uthman, A.6    Fischer, H.7    Tschachler, E.8
  • 13
    • 0036294646 scopus 로고    scopus 로고
    • Human caspase 12 has acquired deleterious mutations
    • 10.1016/S0006-291X(02)00289-9, 12054529
    • Fischer H, Koenig U, Eckhart L, Tschachler E. Human caspase 12 has acquired deleterious mutations. Biochem Biophys Res Commun 2002, 293:722-726. 10.1016/S0006-291X(02)00289-9, 12054529.
    • (2002) Biochem Biophys Res Commun , vol.293 , pp. 722-726
    • Fischer, H.1    Koenig, U.2    Eckhart, L.3    Tschachler, E.4
  • 14
    • 65549118881 scopus 로고    scopus 로고
    • Neurogenesis in an adult avian song nucleus is reduced by decreasing caspase-mediated apoptosis
    • 10.1523/JNEUROSCI.5423-08.2009, 19357283
    • Thompson CK, Brenowitz EA. Neurogenesis in an adult avian song nucleus is reduced by decreasing caspase-mediated apoptosis. J Neurosci 2009, 29:4586-4591. 10.1523/JNEUROSCI.5423-08.2009, 19357283.
    • (2009) J Neurosci , vol.29 , pp. 4586-4591
    • Thompson, C.K.1    Brenowitz, E.A.2
  • 15
    • 68949090398 scopus 로고    scopus 로고
    • Cutting edge: rapid and efficient in vivo cytotoxicity by cytotoxic T cells is independent of granzymes A and B
    • 10.4049/jimmunol.0900466, 19525394
    • Regner M, Pavlinovic L, Koskinen A, Young N, Trapani JA, Mullbacher A. Cutting edge: rapid and efficient in vivo cytotoxicity by cytotoxic T cells is independent of granzymes A and B. J Immunol 2009, 183:37-40. 10.4049/jimmunol.0900466, 19525394.
    • (2009) J Immunol , vol.183 , pp. 37-40
    • Regner, M.1    Pavlinovic, L.2    Koskinen, A.3    Young, N.4    Trapani, J.A.5    Mullbacher, A.6
  • 16
    • 42949098879 scopus 로고    scopus 로고
    • Death by a thousand cuts: granzyme pathways of programmed cell death
    • 10.1146/annurev.immunol.26.021607.090404, 2790083, 18304003
    • Chowdhury D, Lieberman J. Death by a thousand cuts: granzyme pathways of programmed cell death. Annu Rev Immunol 2008, 26:389-420. 10.1146/annurev.immunol.26.021607.090404, 2790083, 18304003.
    • (2008) Annu Rev Immunol , vol.26 , pp. 389-420
    • Chowdhury, D.1    Lieberman, J.2
  • 17
    • 46249085882 scopus 로고    scopus 로고
    • Multifunctional roles for MALT1 in T-cell activation
    • 10.1038/nri2338, 18575460
    • Thome M. Multifunctional roles for MALT1 in T-cell activation. Nat Rev Immunol 2008, 8:495-500. 10.1038/nri2338, 18575460.
    • (2008) Nat Rev Immunol , vol.8 , pp. 495-500
    • Thome, M.1
  • 18
    • 3142773337 scopus 로고    scopus 로고
    • Mutation in kallikrein 4 causes autosomal recessive hypomaturation amelogenesis imperfecta
    • 10.1136/jmg.2003.017657, 1735847, 15235027
    • Hart PS, Hart TC, Michalec MD, Ryu OH, Simmons D, Hong S, Wright JT. Mutation in kallikrein 4 causes autosomal recessive hypomaturation amelogenesis imperfecta. J Med Genet 2004, 41:545-549. 10.1136/jmg.2003.017657, 1735847, 15235027.
    • (2004) J Med Genet , vol.41 , pp. 545-549
    • Hart, P.S.1    Hart, T.C.2    Michalec, M.D.3    Ryu, O.H.4    Simmons, D.5    Hong, S.6    Wright, J.T.7
  • 19
    • 15044355868 scopus 로고    scopus 로고
    • MMP-20 mutation in autosomal recessive pigmented hypomaturation amelogenesis imperfecta
    • 10.1136/jmg.2004.024505, 1736010, 15744043
    • Kim JW, Simmer JP, Hart TC, Hart PS, Ramaswami MD, Bartlett JD, Hu JC. MMP-20 mutation in autosomal recessive pigmented hypomaturation amelogenesis imperfecta. J Med Genet 2005, 42:271-275. 10.1136/jmg.2004.024505, 1736010, 15744043.
    • (2005) J Med Genet , vol.42 , pp. 271-275
    • Kim, J.W.1    Simmer, J.P.2    Hart, T.C.3    Hart, P.S.4    Ramaswami, M.D.5    Bartlett, J.D.6    Hu, J.C.7
  • 21
    • 67649973529 scopus 로고    scopus 로고
    • Two distinct localization patterns of testis-specific serine protease 1 (TESSP1) in the seminiferous tubules of the mouse testis
    • 10.2108/zsj.26.294, 19798924
    • Takano N, Kimura A, Takahashi T. Two distinct localization patterns of testis-specific serine protease 1 (TESSP1) in the seminiferous tubules of the mouse testis. Zoolog Sci 2009, 26:294-300. 10.2108/zsj.26.294, 19798924.
    • (2009) Zoolog Sci , vol.26 , pp. 294-300
    • Takano, N.1    Kimura, A.2    Takahashi, T.3
  • 23
    • 55949101975 scopus 로고    scopus 로고
    • Adaptive evolution of gamete-recognition proteins in birds
    • 10.1007/s00239-008-9165-6, 18850060
    • Berlin S, Qu L, Ellegren H. Adaptive evolution of gamete-recognition proteins in birds. J Mol Evol 2008, 67:488-496. 10.1007/s00239-008-9165-6, 18850060.
    • (2008) J Mol Evol , vol.67 , pp. 488-496
    • Berlin, S.1    Qu, L.2    Ellegren, H.3
  • 24
    • 43249100861 scopus 로고    scopus 로고
    • Phylogenetic analysis and identification of pseudogenes reveal a progressive loss of zona pellucida genes during evolution of vertebrates
    • 10.1095/biolreprod.107.064568, 18046012
    • Goudet G, Mugnier S, Callebaut I, Monget P. Phylogenetic analysis and identification of pseudogenes reveal a progressive loss of zona pellucida genes during evolution of vertebrates. Biol Reprod 2008, 78:796-806. 10.1095/biolreprod.107.064568, 18046012.
    • (2008) Biol Reprod , vol.78 , pp. 796-806
    • Goudet, G.1    Mugnier, S.2    Callebaut, I.3    Monget, P.4
  • 25
    • 33845903845 scopus 로고    scopus 로고
    • Implantation Serine Proteinases heterodimerize and are critical in hatching and implantation
    • 10.1186/1471-213X-6-61, 1713233, 17156484
    • Sharma N, Liu S, Tang L, Irwin J, Meng G, Rancourt DE. Implantation Serine Proteinases heterodimerize and are critical in hatching and implantation. BMC Dev Biol 2006, 6:61. 10.1186/1471-213X-6-61, 1713233, 17156484.
    • (2006) BMC Dev Biol , vol.6 , pp. 61
    • Sharma, N.1    Liu, S.2    Tang, L.3    Irwin, J.4    Meng, G.5    Rancourt, D.E.6
  • 26
    • 2942754000 scopus 로고    scopus 로고
    • Identification and characterization of human and mouse ovastacin: a novel metalloproteinase similar to hatching enzymes from arthropods, birds, amphibians, and fish
    • 10.1074/jbc.M401588200, 15087446
    • Quesada V, Sanchez LM, Alvarez J, Lopez-Otin C. Identification and characterization of human and mouse ovastacin: a novel metalloproteinase similar to hatching enzymes from arthropods, birds, amphibians, and fish. J Biol Chem 2004, 279:26627-26634. 10.1074/jbc.M401588200, 15087446.
    • (2004) J Biol Chem , vol.279 , pp. 26627-26634
    • Quesada, V.1    Sanchez, L.M.2    Alvarez, J.3    Lopez-Otin, C.4
  • 27
    • 33845439096 scopus 로고    scopus 로고
    • Dynamic role of postsynaptic caspase-3 and BIRC4 in zebra finch song-response habituation
    • 10.1016/j.neuron.2006.10.033, 1847391, 17178408
    • Huesmann GR, Clayton DF. Dynamic role of postsynaptic caspase-3 and BIRC4 in zebra finch song-response habituation. Neuron 2006, 52:1061-1072. 10.1016/j.neuron.2006.10.033, 1847391, 17178408.
    • (2006) Neuron , vol.52 , pp. 1061-1072
    • Huesmann, G.R.1    Clayton, D.F.2
  • 30
    • 33747101309 scopus 로고    scopus 로고
    • Tequila, a neurotrypsin ortholog, regulates long-term memory formation in Drosophila
    • 10.1126/science.1127215, 16902143
    • Didelot G, Molinari F, Tchenio P, Comas D, Milhiet E, Munnich A, Colleaux L, Preat T. Tequila, a neurotrypsin ortholog, regulates long-term memory formation in Drosophila. Science 2006, 313:851-853. 10.1126/science.1127215, 16902143.
    • (2006) Science , vol.313 , pp. 851-853
    • Didelot, G.1    Molinari, F.2    Tchenio, P.3    Comas, D.4    Milhiet, E.5    Munnich, A.6    Colleaux, L.7    Preat, T.8
  • 31
    • 77149137406 scopus 로고    scopus 로고
    • Matrix metalloproteinases: Evolution, gene regulation and functional analysis in mouse models
    • 19631700, 10.1016/j.bbamcr.2009.07.004
    • Fanjul-Fernandez M, Folgueras AR, Cabrera S, Lopez-Otin C. Matrix metalloproteinases: Evolution, gene regulation and functional analysis in mouse models. Biochim Biophys Acta 2010, 1803:3-19. 19631700, 10.1016/j.bbamcr.2009.07.004.
    • (2010) Biochim Biophys Acta , vol.1803 , pp. 3-19
    • Fanjul-Fernandez, M.1    Folgueras, A.R.2    Cabrera, S.3    Lopez-Otin, C.4
  • 33
    • 34447338587 scopus 로고    scopus 로고
    • FSH stimulates the expression of the ADAMTS-16 protease in mature human ovarian follicles
    • 10.1093/molehr/gam037, 17519324
    • Gao S, De Geyter C, Kossowska K, Zhang H. FSH stimulates the expression of the ADAMTS-16 protease in mature human ovarian follicles. Mol Hum Reprod 2007, 13:465-471. 10.1093/molehr/gam037, 17519324.
    • (2007) Mol Hum Reprod , vol.13 , pp. 465-471
    • Gao, S.1    De Geyter, C.2    Kossowska, K.3    Zhang, H.4
  • 35
    • 44949205567 scopus 로고    scopus 로고
    • Extracellular matrix and pathogenic mechanisms in osteoarthritis
    • 10.1007/s11926-008-0006-9, 18457609
    • Hardingham T. Extracellular matrix and pathogenic mechanisms in osteoarthritis. Curr Rheumatol Rep 2008, 10:30-36. 10.1007/s11926-008-0006-9, 18457609.
    • (2008) Curr Rheumatol Rep , vol.10 , pp. 30-36
    • Hardingham, T.1
  • 36
    • 33846659488 scopus 로고    scopus 로고
    • Composition-based statistics and translated nucleotide searches: improving the TBLASTN module of BLAST
    • 10.1186/1741-7007-4-41, 1779365, 17156431
    • Gertz EM, Yu YK, Agarwala R, Schaffer AA, Altschul SF. Composition-based statistics and translated nucleotide searches: improving the TBLASTN module of BLAST. BMC Biol 2006, 4:41. 10.1186/1741-7007-4-41, 1779365, 17156431.
    • (2006) BMC Biol , vol.4 , pp. 41
    • Gertz, E.M.1    Yu, Y.K.2    Agarwala, R.3    Schaffer, A.A.4    Altschul, S.F.5
  • 37
    • 0031574072 scopus 로고    scopus 로고
    • The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools
    • 10.1093/nar/25.24.4876, 147148, 9396791
    • Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG. The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 1997, 25:4876-4882. 10.1093/nar/25.24.4876, 147148, 9396791.
    • (1997) Nucleic Acids Res , vol.25 , pp. 4876-4882
    • Thompson, J.D.1    Gibson, T.J.2    Plewniak, F.3    Jeanmougin, F.4    Higgins, D.G.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.