-
1
-
-
33845608810
-
The multifarious roles of PPR proteinsinplantmitochondrialgeneexpression
-
Andrés, C., Lurin, C., and Small, I. (2007). The multifarious roles of PPR proteinsinplantmitochondrialgeneexpression. Physiol. Plant.129:14-22.
-
(2007)
Physiol.plant
, vol.129
, pp. 14-22
-
-
Andrés, C.1
Lurin, C.2
Small, I.3
-
2
-
-
0034649566
-
Analysis of the genome sequence of the flowering plant Arabidopsis thaliana
-
Arabidopsis Genome Initiative
-
Arabidopsis Genome Initiative (2000). Analysis of the genome sequence of the flowering plant Arabidopsis thaliana. Nature 408: 796-815.
-
(2000)
Nature
, vol.408
, pp. 796-815
-
-
-
3
-
-
0036678039
-
A pentatrico- peptide repeat-containing gene restores fertility to cytoplasmic male- sterile plants
-
Bentolila, S., Alfonso, A.A., and Hanson, M.R. (2002). A pentatrico- peptide repeat-containing gene restores fertility to cytoplasmic male- sterile plants. Proc. Natl. Acad. Sci. USA 99: 10887-10892.
-
(2002)
Proc. Natl. Acad. Sci. Usa
, vol.99
, pp. 10887-10892
-
-
Bentolila, S.1
Alfonso, A.A.2
Hanson, M.R.3
-
4
-
-
37249020936
-
Cis- and trans-splicing of group II introns in plant mitochondria
-
Bonen, L. (2008). Cis- and trans-splicing of group II introns in plant mitochondria. Mitochondrion 8: 26-34.
-
(2008)
Mitochondrion
, vol.8
, pp. 26-34
-
-
Bonen, L.1
-
5
-
-
0041847086
-
The radish Rfo restorer gene of Ogura cytoplasmic male sterility encodes a protein with multiple pentatricopeptide repeats
-
Brown, G.G., Formanova, N., Jin, H., Wargachuk, R., Dendy, C., Patil, P., Laforest, M., Zhang, J., Cheung, W.Y., and Landry, B.S. (2003). The radish Rfo restorer gene of Ogura cytoplasmic male sterility encodes a protein with multiple pentatricopeptide repeats. Plant J. 35: 262-272.
-
(2003)
Plant J
, vol.35
, pp. 262-272
-
-
Brown, G.G.1
Formanova, N.2
Jin, H.3
Wargachuk, R.4
Dendy, C.5
Patil, P.6
Laforest, M.7
Zhang, J.8
Cheung, W.Y.9
Landry, B.S.10
-
6
-
-
0034958223
-
Male sterility in plants: Occurrence, determinism, significance and use
-
Budar, F., and Pelletier, G. (2001). Male sterility in plants: Occurrence, determinism, significance and use. C. R. Acad. Sci. III 324: 543-550.
-
(2001)
C. R. Acad. Sci
, vol.324
, pp. 543-550
-
-
Budar, F.1
Pelletier, G.2
-
7
-
-
67650129853
-
Arabidopsis encodes four tRNase Z enzymes
-
Canino, G., Bocian, E., Barbezier, N., Echeverria, M., Forner, J., Binder, S., and Marchfelder, A. (2009). Arabidopsis encodes four tRNase Z enzymes. Plant Physiol. 150: 1494-1502.
-
(2009)
Plant Physiol
, vol.150
, pp. 1494-1502
-
-
Canino, G.1
Bocian, E.2
Barbezier, N.3
Echeverria, M.4
Forner, J.5
Binder, S.6
Marchfelder, A.7
-
8
-
-
33846470605
-
Cytoplasmic male sterility: A window to the world of plant mitochondrial-nuclear interactions
-
Chase, C.D. (2007). Cytoplasmic male sterility: A window to the world of plant mitochondrial-nuclear interactions. Trends Genet. 23: 81-90.
-
(2007)
Trends Genet
, vol.23
, pp. 81-90
-
-
Chase, C.D.1
-
9
-
-
0032447801
-
Floral dip: A simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana
-
Clough, S.J., and Bent, A.F. (1998). Floral dip: A simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana. Plant J. 16: 735-742.
-
(1998)
Plant J
, vol.16
, pp. 735-742
-
-
Clough, S.J.1
Bent, A.F.2
-
10
-
-
0142245636
-
A gateway cloning vector set for high-throughput functional analysis of genes in planta
-
Curtis, M.D., and Grossniklaus, U. (2003). A gateway cloning vector set for high-throughput functional analysis of genes in planta. Plant Physiol. 133: 462-469.
-
(2003)
Plant Physiol
, vol.133
, pp. 462-469
-
-
Curtis, M.D.1
Grossniklaus, U.2
-
11
-
-
0032030760
-
Soluble, highly fluorescent variants of green fluorescent protein (GFP) for use in higher plants
-
Davis, S.J., and Vierstra, R.D. (1998). Soluble, highly fluorescent variants of green fluorescent protein (GFP) for use in higher plants. Plant Mol. Biol. 36: 521-528.
-
(1998)
Plant Mol. Biol
, vol.36
, pp. 521-528
-
-
Davis, S.J.1
Vierstra, R.D.2
-
12
-
-
37449010358
-
The pentatricopeptide repeat gene OTP43 is required for trans-splicing of the mitochondrial nad1 Intron 1 in Arabidopsis thaliana
-
de Longevialle, A.F., Meyer, E.H., Andres, C., Taylor, N.L., Lurin, C., Millar, A.H., and Small, I.D. (2007). The pentatricopeptide repeat gene OTP43 is required for trans-splicing of the mitochondrial nad1 Intron 1 in Arabidopsis thaliana. Plant Cell 19: 3256-3265.
-
(2007)
Plant Cell
, vol.19
, pp. 3256-3265
-
-
de Longevialle, A.F.1
Meyer, E.H.2
Andres, C.3
Taylor, N.L.4
Lurin, C.5
Millar, A.H.6
Small, I.D.7
-
13
-
-
10744221083
-
Identification of the fertility restoration locus, Rfo, in radish, as a member of the pentatricopeptide-repeat protein family
-
Desloire, S., et al. (2003). Identification of the fertility restoration locus, Rfo, in radish, as a member of the pentatricopeptide-repeat protein family. EMBO Rep. 4: 588-594.
-
(2003)
Embo Rep
, vol.4
, pp. 588-594
-
-
Desloire, S.1
-
14
-
-
34547373669
-
The red fluorescent protein eqFP611: Application in subcellular localization studies in higher plants
-
Forner, J., and Binder, S. (2007). The red fluorescent protein eqFP611: Application in subcellular localization studies in higher plants. BMC Plant Biol. 7: 28.
-
(2007)
Bmc Plant Biol
, vol.7
, pp. 28
-
-
Forner, J.1
Binder, S.2
-
15
-
-
57749094687
-
Mitochondrial mRNA polymorphisms in different Arabidopsis thaliana accessions
-
Forner, J., Hölzle, A., Jonietz, C., Thuss, S., Weber, B., Schwärzlander, M., Meyer, R.C., and Binder, S. (2008). Mitochondrial mRNA polymor- phisms in different Arabidopsis thaliana accessions. Plant Physiol. 148: 1106-1116.
-
(2008)
Plant Physiol
, vol.148
, pp. 1106-1116
-
-
Forner, J.1
Hölzle, A.2
Jonietz, C.3
Thuss, S.4
Weber, B.5
Schwärzlander, M.6
Meyer, R.C.7
Binder, S.8
-
16
-
-
34547128656
-
Mapping of mitochondrial mRNA termini in Arabidopsis thaliana: T-elements contribute to 59 and 39 end formation
-
Forner, J., Weber, B., Thuss, S., Wildum, S., and Binder, S. (2007). Mapping of mitochondrial mRNA termini in Arabidopsis thaliana: T-elements contribute to 59 and 39 end formation. Nucleic Acids Res. 35: 3676-3692.
-
(2007)
Nucleic Acids Res
, vol.35
, pp. 3676-3692
-
-
Forner, J.1
Weber, B.2
Thuss, S.3
Wildum, S.4
Binder, S.5
-
17
-
-
23844437407
-
Distant sequences determine 59 end formation of cox3 transcripts in Arabidopsis thaliana ecotype C24
-
Forner, J., Weber, B., Wietholter, C., Meyer, R.C., and Binder, S. (2005). Distant sequences determine 59 end formation of cox3 tran- scripts in Arabidopsis thaliana ecotype C24. Nucleic Acids Res. 33: 4673-4682.
-
(2005)
Nucleic Acids Res
, vol.33
, pp. 4673-4682
-
-
Forner, J.1
Weber, B.2
Wietholter, C.3
Meyer, R.C.4
Binder, S.5
-
18
-
-
34547845666
-
Expression of the plant mitochondrial genome
-
D. Logan, ed (Ames, IA: Black- well Publishing
-
Gagliardi, D., and Binder, S. (2007). Expression of the plant mitochondrial genome. In Plant Mitochondria, D. Logan, ed (Ames, IA: Black- well Publishing), pp. 50-95.
-
(2007)
Plant Mitochondria
, pp. 50-95
-
-
Gagliardi, D.1
Binder, S.2
-
19
-
-
34250747504
-
Genes encoding pentatricopeptide repeat (PPR) proteins are not conserved in location in plant genomes and may be subject to diversifying selection
-
Geddy, R., and Brown, G.G. (2007). Genes encoding pentatricopeptide repeat (PPR) proteins are not conserved in location in plant genomes and may be subject to diversifying selection. BMC Genomics 8: 130.
-
(2007)
Bmc Genomics
, vol.8
, pp. 130
-
-
Geddy, R.1
Brown, G.G.2
-
20
-
-
2942696655
-
Interactions of mitochondrial and nuclear genes that affect male gametophyte development
-
Hanson, M.R., and Bentolila, S. (2004). Interactions of mitochondrial and nuclear genes that affect male gametophyte development. Plant Cell 16 (suppl.): S154-S169.
-
(2004)
Plant Cell
, vol.16
, Issue.SUPPL.
-
-
Hanson, M.R.1
Bentolila, S.2
-
21
-
-
0035983615
-
Arabidopsis map-based cloning in the post-genome era
-
Jander, G., Norris, S.R., Rounsley, S.D., Bush, D.F., Levin, I.M., and Last, R.L. (2002). Arabidopsis map-based cloning in the post-genome era. Plant Physiol. 129: 440-450.
-
(2002)
Plant Physiol
, vol.129
, pp. 440-450
-
-
Jander, G.1
Norris, S.R.2
Rounsley, S.D.3
Bush, D.F.4
Levin, I.M.5
Last, R.L.6
-
22
-
-
49249105375
-
Suppression mechanism of mitochondrial ORF79 accumulation by Rf1 protein in BT-type cytoplasmic male sterile rice
-
Kazama, T., Nakamura, T., Watanabe, M., Sugita, M., and Toriyama, K. (2008). Suppression mechanism of mitochondrial ORF79 accumulation by Rf1 protein in BT-type cytoplasmic male sterile rice. Plant J. 55: 619-628.
-
(2008)
Plant J
, vol.55
, pp. 619-628
-
-
Kazama, T.1
Nakamura, T.2
Watanabe, M.3
Sugita, M.4
Toriyama, K.5
-
23
-
-
0037854732
-
Genetic characterization of a pentatricopeptide repeat protein gene, orf687, that restores fertility in the cytoplasmic male-sterile Kosena radish
-
Koizuka, N., Imai, R., Fujimoto, H., Hayakawa, T., Kimura, Y., Kohno-Murase, J., Sakai, T., Kawasaki, S., and Imamura, J. (2003). Genetic characterization of a pentatricopeptide repeat protein gene, orf687, that restores fertility in the cytoplasmic male-sterile Kosena radish. Plant J. 34: 407-415.
-
(2003)
Plant J
, vol.34
, pp. 407-415
-
-
Koizuka, N.1
Imai, R.2
Fujimoto, H.3
Hayakawa, T.4
Kimura, Y.5
Kohno-Murase, J.6
Sakai, T.7
Kawasaki, S.8
Imamura, J.9
-
24
-
-
37249058160
-
Angiosperm mitochondrial genomes and mutations
-
Kubo, T., and Newton, K.J. (2008). Angiosperm mitochondrial genomes and mutations. Mitochondrion 8: 5-14.
-
(2008)
Mitochondrion
, vol.8
, pp. 5-14
-
-
Kubo, T.1
Newton, K.J.2
-
25
-
-
0037079666
-
RT-PCR analysis of 59 to 39-end-ligated mRNAs identifies the extremities of cox2 transcripts in pea mitochondria
-
Kuhn, J., and Binder, S. (2002). RT-PCR analysis of 59 to 39-end-ligated mRNAs identifies the extremities of cox2 transcripts in pea mitochon- dria. Nucleic Acids Res. 30: 439-446.
-
(2002)
Nucleic Acids Res
, vol.30
, pp. 439-446
-
-
Kuhn, J.1
Binder, S.2
-
26
-
-
70849100558
-
Phage-type RNA polymerase RPOTmp performs gene-specific transcription in mitochondria of Arabidopsis thaliana
-
Kühn, K., Richter, U., Meyer, E.H., Delannoy, E., FalcondeLongevialle, A., O'Toole, N., Börner, T., Millar, A.H., Small, I.D., and Whelan, J. (2009). Phage-type RNA polymerase RPOTmp performs gene-specific transcription in mitochondria of Arabidopsis thaliana. Plant Cell 21: 2762-2779.
-
(2009)
Plant Cell
, vol.21
, pp. 2762-2779
-
-
Kühn, K.1
Richter, U.2
Meyer, E.H.3
Delannoy, E.4
Falcondelongevialle, A.5
O'Toole, N.6
Börner, T.7
Millar, A.H.8
Small, I.D.9
Whelan, J.10
-
27
-
-
0027435638
-
Higher plant mitochondria encode an homologue of the nuclear-encoded 30-kDa subunit of bovine mitochondrial complex I
-
Lamattina, L., Gonzalez, D., Gualberto, J., and Grienenberger, J.M. (1993). Higher plant mitochondria encode an homologue of the nuclear-encoded 30-kDa subunit of bovine mitochondrial complex I. Eur. J. Biochem. 217: 831-838.
-
(1993)
Eur. J. Biochem
, vol.217
, pp. 831-838
-
-
Lamattina, L.1
Gonzalez, D.2
Gualberto, J.3
Grienenberger, J.M.4
-
28
-
-
36448991500
-
Clustal W and Clustal X version 2.0
-
Larkin, M.A., et al. (2007). Clustal W and Clustal X version 2.0. Bioinformatics 23: 2947-2948.
-
(2007)
Bioinformatics
, vol.23
, pp. 2947-2948
-
-
Larkin, M.A.1
-
29
-
-
4043172772
-
Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins reveals their essential role in organelle biogenesis
-
Lurin, C., et al. (2004). Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins reveals their essential role in organelle biogenesis. Plant Cell 16: 2089-2103.
-
(2004)
Plant Cell
, vol.16
, pp. 2089-2103
-
-
Lurin, C.1
-
30
-
-
37249047953
-
Two DEAD-box proteins may be part of RNA-dependent high-molecular-mass protein complexes in Arabidopsis mitochondria
-
Matthes, A., Schmidt-Gattung, S., Köhler, D., Forner, J., Wildum, S., Raabe, M., Urlaub, H., and Binder, S. (2007). Two DEAD-box proteins may be part of RNA-dependent high-molecular-mass protein complexes in Arabidopsis mitochondria. Plant Physiol. 145: 1637-1646.
-
(2007)
Plant Physiol
, vol.145
, pp. 1637-1646
-
-
Matthes, A.1
Schmidt-Gattung, S.2
Köhler, D.3
Forner, J.4
Wildum, S.5
Raabe, M.6
Urlaub, H.7
Binder, S.8
-
31
-
-
3242876311
-
BLAST: At the core of a powerful and diverse set of sequence analysis tools
-
McGinnis, S., and Madden, T.L. (2004). BLAST: At the core of a powerful and diverse set of sequence analysis tools. Nucleic Acids Res. 32: W20-25.
-
(2004)
Nucleic Acids Res
, vol.32
-
-
McGinnis, S.1
Madden, T.L.2
-
32
-
-
57149118430
-
A conserved DYW domain of the pentatricopeptide repeat protein possesses a novel endoribonuclease activity
-
Nakamura, T., and Sugita, M. (2008). A conserved DYW domain of the pentatricopeptide repeat protein possesses a novel endoribonuclease activity. FEBS Lett. 582: 4163-4168.
-
(2008)
Febs Lett
, vol.582
, pp. 4163-4168
-
-
Nakamura, T.1
Sugita, M.2
-
33
-
-
62549149035
-
Pentatricopeptide repeat proteins with the DYW motif have distinct molecular functions in RNA editing and RNA cleavage in Arabidopsis chloroplasts
-
Okuda, K., Chateigner-Boutin, A.L., Nakamura, T., Delannoy, E., Sugita, M., Myouga, F., Motohashi, R., Shinozaki, K., Small, I., and Shikanai, T. (2009). Pentatricopeptide repeat proteins with the DYW motif have distinct molecular functions in RNA editing and RNA cleavage in Arabidopsis chloroplasts. Plant Cell 21: 146-156.
-
(2009)
Plant Cell
, vol.21
, pp. 146-156
-
-
Okuda, K.1
Chateigner-Boutin, A.L.2
Nakamura, T.3
Delannoy, E.4
Sugita, M.5
Myouga, F.6
Motohashi, R.7
Shinozaki, K.8
Small, I.9
Shikanai, T.10
-
34
-
-
44649133995
-
On the expansion of the pentatricopeptide repeat gene family in plants
-
O'Toole, N., Hattori, M., Andres, C., Iida, K., Lurin, C., Schmitz- Linneweber, C., Sugita, M., and Small, I. (2008). On the expansion of the pentatricopeptide repeat gene family in plants. Mol. Biol. Evol. 25: 1120-1128.
-
(2008)
Mol. Biol. Evol
, vol.25
, pp. 1120-1128
-
-
O'Toole, N.1
Hattori, M.2
Andres, C.3
Iida, K.4
Lurin, C.5
Schmitz- linneweber, C.6
Sugita, M.7
Small, I.8
-
35
-
-
4944238979
-
AtmtPNPase is required for multiple aspects of the 18S rRNA metabolism in Arabidopsis thaliana mitochondria
-
Perrin, R., Lange, H., Grienenberger, J.M., and Gagliardi, D. (2004a). AtmtPNPase is required for multiple aspects of the 18S rRNA metab- olism in Arabidopsis thaliana mitochondria. Nucleic Acids Res. 32: 5174-5182.
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 5174-5182
-
-
Perrin, R.1
Lange, H.2
Grienenberger, J.M.3
Gagliardi, D.4
-
36
-
-
2942554881
-
Two exoribonucleases act sequentially to process mature 39-ends of atp9 mRNAs in Arabidopsis mitochondria
-
Perrin, R., Meyer, E.H., Zaepfel, M., Kim, Y.J., Mache, R., Grienenberger, J.M., Gualberto, J.M., and Gagliardi, D. (2004b). Two exoribonu- cleases act sequentially to process mature 39-ends of atp9 mRNAs in Arabidopsis mitochondria. J. Biol. Chem. 279: 25440-25446.
-
(2004)
J. Biol. Chem
, vol.279
, pp. 25440-25446
-
-
Perrin, R.1
Meyer, E.H.2
Zaepfel, M.3
Kim, Y.J.4
Mache, R.5
Grienenberger, J.M.6
Gualberto, J.M.7
Gagliardi, D.8
-
37
-
-
67651171227
-
Site specific binding of a PPR protein defines and stabilizes 59 and 39 mRNA termini in chloroplasts
-
Pfalz, J., Bayraktar, O.A., Prikryl, J., and Barkan, A. (2009). Site specific binding of a PPR protein defines and stabilizes 59 and 39 mRNA termini in chloroplasts. EMBO J. 28: 2042-2052.
-
(2009)
Embo J
, vol.28
, pp. 2042-2052
-
-
Pfalz, J.1
Bayraktar, O.A.2
Prikryl, J.3
Barkan, A.4
-
39
-
-
0038817772
-
Large-scale identification and analysis of genome-wide single-nucleotide polymorphisms for mapping in Arabidopsis thaliana
-
Schmid, K.J., Sörensen, T.R., Stracke, R., Törjek, O., Altmann, T., Mitchell-Olds, T., and Weisshaar, B. (2003). Large-scale identifica- tion and analysis of genome-wide single-nucleotide polymorphisms for mapping in Arabidopsis thaliana. Genome Res. 13: 1250-1257.
-
(2003)
Genome Res
, vol.13
, pp. 1250-1257
-
-
Schmid, K.J.1
Sörensen, T.R.2
Stracke, R.3
Törjek, O.4
Altmann, T.5
Mitchell-Olds, T.6
Weisshaar, B.7
-
40
-
-
56549095978
-
Pentatricopeptide repeat proteins: A socket set for organelle gene expression
-
Schmitz-Linneweber, C., and Small, I. (2008). Pentatricopeptide re- peat proteins: a socket set for organelle gene expression. Trends Plant Sci. 13: 663-670.
-
(2008)
Trends Plant Sci
, vol.13
, pp. 663-670
-
-
Schmitz-Linneweber, C.1
Small, I.2
-
41
-
-
0030009212
-
Nuclear genes associated with a single Brassica CMS restorer locus influence transcripts of three different mitochondrial gene regions
-
Singh, M., Hamel, N., Menassa, R., Li, X.Q., Young, B., Jean, M., Landry, B.S., and Brown, G.G. (1996). Nuclear genes associated with a single Brassica CMS restorer locus influence transcripts of three different mitochondrial gene regions. Genetics 143: 505-516.
-
(1996)
Genetics
, vol.143
, pp. 505-516
-
-
Singh, M.1
Hamel, N.2
Menassa, R.3
Li, X.Q.4
Young, B.5
Jean, M.6
Landry, B.S.7
Brown, G.G.8
-
42
-
-
37249023728
-
The process of RNA editing in plant mitochondria
-
Takenaka, M., Verbitskiy, D., van der Merwe, J.A., Zehrmann, A., and Brennicke, A. (2008). The process of RNA editing in plant mitochondria. Mitochondrion 8: 35-46.
-
(2008)
Mitochondrion
, vol.8
, pp. 35-46
-
-
Takenaka, M.1
Verbitskiy, D.2
van der Merwe, J.A.3
Zehrmann, A.4
Brennicke, A.5
-
43
-
-
33646835190
-
Cytoplasmic male sterility of rice with boro II cytoplasm is caused by a cytotoxic peptide and is restored by two related PPR motif genes via distinct modes of mRNA silencing
-
Wang, Z., et al. (2006). Cytoplasmic male sterility of rice with boro II cytoplasm is caused by a cytotoxic peptide and is restored by two related PPR motif genes via distinct modes of mRNA silencing. Plant Cell 18: 676-687.
-
(2006)
Plant Cell
, vol.18
, pp. 676-687
-
-
Wang, Z.1
-
45
-
-
50649095496
-
Sequence-specific binding of a chloroplast pentatricopeptide repeat protein to its native group II intron ligand
-
Williams-Carrier, R., Kroeger, T., and Barkan, A. (2008). Sequence- specific binding of a chloroplast pentatricopeptide repeat protein to its native group II intron ligand. RNA 14: 1930-1941.
-
(2008)
Rna
, vol.14
, pp. 1930-1941
-
-
Williams-Carrier, R.1
Kroeger, T.2
Barkan, A.3
-
46
-
-
33750378958
-
Blue native PAGE
-
Wittig, I., Braun, H.P., and Schagger, H. (2006). Blue native PAGE. Nat. Protoc. 1: 418-428.
-
(2006)
Nat. Protoc
, vol.1
, pp. 418-428
-
-
Wittig, I.1
Braun, H.P.2
Schagger, H.3
-
47
-
-
64749105292
-
A DYW domain-containing pentatricopeptide repeat protein is required for RNA editing at multiple sites in mitochondria of Arabidopsis thaliana
-
Zehrmann, A., Verbitskiy, D., van der Merwe, J.A., Brennicke, A., and Takenaka, M. (2009). A DYW domain-containing pentatricopeptide repeat protein is required for RNA editing at multiple sites in mitochondria of Arabidopsis thaliana. Plant Cell 21: 558-567.
-
(2009)
Plant Cell
, vol.21
, pp. 558-567
-
-
Zehrmann, A.1
Verbitskiy, D.2
van der Merwe, J.A.3
Brennicke, A.4
Takenaka, M.5
|