-
1
-
-
33846838995
-
Traffic of interacting ribosomes: effects of single-machine mechanochemistry on protein synthesis
-
Basu A., Chowdhury D. Traffic of interacting ribosomes: effects of single-machine mechanochemistry on protein synthesis. Phys. Rev. E 2007, 75:021902.
-
(2007)
Phys. Rev. E
, vol.75
, pp. 021902
-
-
Basu, A.1
Chowdhury, D.2
-
2
-
-
33748377124
-
Quantification of protein half-lives in the budding yeast proteome
-
Belle A., Tanay A., Bitincka L., Shamir R., OShea E.K. Quantification of protein half-lives in the budding yeast proteome. Proc. Natl. Acad. Sci. USA 2006, 103:13004-13009.
-
(2006)
Proc. Natl. Acad. Sci. USA
, vol.103
, pp. 13004-13009
-
-
Belle, A.1
Tanay, A.2
Bitincka, L.3
Shamir, R.4
OShea, E.K.5
-
3
-
-
0018613233
-
A kinetic model of protein synthesis. Application to hemoglobin synthesis and translational control
-
Bergmann J.E., Lodish H.F. A kinetic model of protein synthesis. Application to hemoglobin synthesis and translational control. J. Biol. Chem. 1979, 254:11927-11937.
-
(1979)
J. Biol. Chem.
, vol.254
, pp. 11927-11937
-
-
Bergmann, J.E.1
Lodish, H.F.2
-
4
-
-
1442349828
-
Dynamics and processivity of 40S ribosome scanning on mRNA in yeast
-
Berthelot K., Muldoon M., Rajkowitsch L., Hughes J., McCarthy J.E. Dynamics and processivity of 40S ribosome scanning on mRNA in yeast. Mol. Microbiol. 2004, 51:987-1001.
-
(2004)
Mol. Microbiol.
, vol.51
, pp. 987-1001
-
-
Berthelot, K.1
Muldoon, M.2
Rajkowitsch, L.3
Hughes, J.4
McCarthy, J.E.5
-
5
-
-
10944232800
-
Post-transcriptional expression regulation in the yeast Saccharomyces cerevisiae on a genomic scale
-
Beyer A., Hollunder J., Nasheuer H.P., Wilhelm T. Post-transcriptional expression regulation in the yeast Saccharomyces cerevisiae on a genomic scale. Mol. Cell Proteomics 2004, 3:1083-1092.
-
(2004)
Mol. Cell Proteomics
, vol.3
, pp. 1083-1092
-
-
Beyer, A.1
Hollunder, J.2
Nasheuer, H.P.3
Wilhelm, T.4
-
6
-
-
0038402506
-
Computational modelling and experimental analysis of nonsense-mediated decay in yeast
-
Cao D., Parker R. Computational modelling and experimental analysis of nonsense-mediated decay in yeast. Cell 2003, 113:533-545.
-
(2003)
Cell
, vol.113
, pp. 533-545
-
-
Cao, D.1
Parker, R.2
-
7
-
-
35448963922
-
Inactivation of NMD increases viability of sup45 nonsense mutants in Saccharomyces cerevisiae
-
Chabelskaya S., Gryzina V., Moskalenko S., Le Goff C., Zhouravleva G. Inactivation of NMD increases viability of sup45 nonsense mutants in Saccharomyces cerevisiae. BMC Syst. Bio. 2007, 8:71.
-
(2007)
BMC Syst. Bio.
, vol.8
, pp. 71
-
-
Chabelskaya, S.1
Gryzina, V.2
Moskalenko, S.3
Le Goff, C.4
Zhouravleva, G.5
-
8
-
-
0042845842
-
Ribosome recycling, diffusion, and mRNA loop formation in translational regulation
-
Chou T. Ribosome recycling, diffusion, and mRNA loop formation in translational regulation. Biophys. J. 2003, 85:755-773.
-
(2003)
Biophys. J.
, vol.85
, pp. 755-773
-
-
Chou, T.1
-
9
-
-
18144385852
-
Clustered bottlenecks in mRNA translation and protein synthesis
-
Chou T., Lakatos G. Clustered bottlenecks in mRNA translation and protein synthesis. Phys. Rev. Lett. 2004, 93(19):198101.
-
(2004)
Phys. Rev. Lett.
, vol.93
, Issue.19
, pp. 198101
-
-
Chou, T.1
Lakatos, G.2
-
10
-
-
0022547355
-
Expression of peptide chain release factor 2 requires high-efficiency frameshift
-
Craigen W.J., Caskey C.T. Expression of peptide chain release factor 2 requires high-efficiency frameshift. Nature 1986, 322:273-275.
-
(1986)
Nature
, vol.322
, pp. 273-275
-
-
Craigen, W.J.1
Caskey, C.T.2
-
11
-
-
0022006831
-
Bacterial peptide chain release factors: conserved primary structure and possible frameshift regulation of release factor 2
-
Craigen W.J., Cook R.G., Tate W., Caskey C. Bacterial peptide chain release factors: conserved primary structure and possible frameshift regulation of release factor 2. PNAS 1985, 82:3616-3620.
-
(1985)
PNAS
, vol.82
, pp. 3616-3620
-
-
Craigen, W.J.1
Cook, R.G.2
Tate, W.3
Caskey, C.4
-
12
-
-
57349131865
-
Control of translation initiation: a model-based analysis from limited experimental data
-
Dimelow R.J., Wilkinson S.J. Control of translation initiation: a model-based analysis from limited experimental data. Interface J. R. Soc. 2009, 6:51-61.
-
(2009)
Interface J. R. Soc.
, vol.6
, pp. 51-61
-
-
Dimelow, R.J.1
Wilkinson, S.J.2
-
13
-
-
0032937983
-
The C-terminus of ERF1 defines a functionally important domain for translation termination in Saccharomyces cerevisiae
-
Eurwilaichitr L., Graves F.M., Stansfield I., Tuite M.F. The C-terminus of ERF1 defines a functionally important domain for translation termination in Saccharomyces cerevisiae. Mol. Microbiol. 1999, 32:485-496.
-
(1999)
Mol. Microbiol.
, vol.32
, pp. 485-496
-
-
Eurwilaichitr, L.1
Graves, F.M.2
Stansfield, I.3
Tuite, M.F.4
-
14
-
-
0023531427
-
Chemical reaction network structure and the stability of complex isothermal reactors I. The deficiency zero and deficiency one theorems
-
Feinberg M. Chemical reaction network structure and the stability of complex isothermal reactors I. The deficiency zero and deficiency one theorems. Chem. Eng. Sci. 1987, 42:2229-2268.
-
(1987)
Chem. Eng. Sci.
, vol.42
, pp. 2229-2268
-
-
Feinberg, M.1
-
15
-
-
0028581973
-
A highly conserved eukaryotic protein family possessing properties of polypeptide chain release factor
-
Frolova L., Le Goff X., Rasmussen H.H., Cheperegin S., Drugeon G., Kress M., Arman I., Haenni A.L., Celis J.E., Philippe M. A highly conserved eukaryotic protein family possessing properties of polypeptide chain release factor. Nature 1994, 372:701-703.
-
(1994)
Nature
, vol.372
, pp. 701-703
-
-
Frolova, L.1
Le Goff, X.2
Rasmussen, H.H.3
Cheperegin, S.4
Drugeon, G.5
Kress, M.6
Arman, I.7
Haenni, A.L.8
Celis, J.E.9
Philippe, M.10
-
16
-
-
0142215475
-
Global analysis of protein expression in yeast
-
Ghaemmaghami S., Huh W.K., Bower K., Howson R.W., Belle A., Dephoure N., OShea E.K., Weissman J.S. Global analysis of protein expression in yeast. Nature 2003, 425:737-741.
-
(2003)
Nature
, vol.425
, pp. 737-741
-
-
Ghaemmaghami, S.1
Huh, W.K.2
Bower, K.3
Howson, R.W.4
Belle, A.5
Dephoure, N.6
OShea, E.K.7
Weissman, J.S.8
-
17
-
-
0019178883
-
Mathematical modelling of translation of mRNA in eukaryotes; steady state, time-dependent processes and application to reticulocytes
-
Heinrich R., Rapoport T.A. Mathematical modelling of translation of mRNA in eukaryotes; steady state, time-dependent processes and application to reticulocytes. J. Theor. Biol. 1980, 86:279-313.
-
(1980)
J. Theor. Biol.
, vol.86
, pp. 279-313
-
-
Heinrich, R.1
Rapoport, T.A.2
-
18
-
-
0025119820
-
Autogeneous suppression of an opal mutation in the gene encoding peptide chain release factor 2
-
Kawakami K., Nakamura Y. Autogeneous suppression of an opal mutation in the gene encoding peptide chain release factor 2. PNAS 1990, 87:8432-8436.
-
(1990)
PNAS
, vol.87
, pp. 8432-8436
-
-
Kawakami, K.1
Nakamura, Y.2
-
19
-
-
67649226102
-
The paradox of viable sup45 STOP mutations: a necessary equilibrium between translation readthrough, activity and stability of the protein
-
Kiktev D., Moskalenko S., Murina O., Baudin-Bailleu A., Rousset J.P., Zhouravleva G. The paradox of viable sup45 STOP mutations: a necessary equilibrium between translation readthrough, activity and stability of the protein. Mol. Genet. Genomics 2009, 282:83-96.
-
(2009)
Mol. Genet. Genomics
, vol.282
, pp. 83-96
-
-
Kiktev, D.1
Moskalenko, S.2
Murina, O.3
Baudin-Bailleu, A.4
Rousset, J.P.5
Zhouravleva, G.6
-
20
-
-
54849413018
-
Introducing sense into nonsense in treatments of human genetic diseases
-
Linde L., Kerem B. Introducing sense into nonsense in treatments of human genetic diseases. Trends Genetics 2008, 24:552-563.
-
(2008)
Trends Genetics
, vol.24
, pp. 552-563
-
-
Linde, L.1
Kerem, B.2
-
21
-
-
84984085494
-
Concerning the kinetics of polypeptide synthesis on polyribosomes
-
MacDonald C.T., Gibbs J.H. Concerning the kinetics of polypeptide synthesis on polyribosomes. Biopolymers 1969, 7:707-725.
-
(1969)
Biopolymers
, vol.7
, pp. 707-725
-
-
MacDonald, C.T.1
Gibbs, J.H.2
-
22
-
-
0014245158
-
Kinetics of biopolymerization on nucleic acid templates
-
MacDonald C.T., Gibbs J.H., Pipkin A.C. Kinetics of biopolymerization on nucleic acid templates. Biopolymers 1968, 6:1-5.
-
(1968)
Biopolymers
, vol.6
, pp. 1-5
-
-
MacDonald, C.T.1
Gibbs, J.H.2
Pipkin, A.C.3
-
23
-
-
33645775569
-
An algorithmic framework for genome-wide modeling and analysis of translation networks
-
Mehra A., Hatzimanikatis V. An algorithmic framework for genome-wide modeling and analysis of translation networks. Biophys. J. 2006, 90:1136-1146.
-
(2006)
Biophys. J.
, vol.90
, pp. 1136-1146
-
-
Mehra, A.1
Hatzimanikatis, V.2
-
24
-
-
0347132484
-
Insights into the relation between mRNA and protein expression patterns: I. Theoretical considerations
-
Mehra A., Lee K.H., Hatzimanikatis V. Insights into the relation between mRNA and protein expression patterns: I. Theoretical considerations. Biotechnol. Bioeng. 2003, 84:822-833.
-
(2003)
Biotechnol. Bioeng.
, vol.84
, pp. 822-833
-
-
Mehra, A.1
Lee, K.H.2
Hatzimanikatis, V.3
-
25
-
-
0037707473
-
Viable nonsense mutants for the essential gene SUP45 of Saccharomyces cerevisiae
-
Moskalenko S.E., Chabelskaya S.V., Inge-Vechtomov S.G., Philippe M., Zhouravleva G.A. Viable nonsense mutants for the essential gene SUP45 of Saccharomyces cerevisiae. BMC Mol. Biol. 2003, 4:2.
-
(2003)
BMC Mol. Biol.
, vol.4
, pp. 2
-
-
Moskalenko, S.E.1
Chabelskaya, S.V.2
Inge-Vechtomov, S.G.3
Philippe, M.4
Zhouravleva, G.A.5
-
27
-
-
1342347334
-
Local inhomogeneity in asymmetric simple exclusion processes with extended objects
-
Shaw L.B., Kolomeisky A.B., Lee K.H. Local inhomogeneity in asymmetric simple exclusion processes with extended objects. J. Phys. A 2004, 37:2105-2113.
-
(2004)
J. Phys. A
, vol.37
, pp. 2105-2113
-
-
Shaw, L.B.1
Kolomeisky, A.B.2
Lee, K.H.3
-
28
-
-
42749107950
-
Mean-field approaches to the totally asymmetric exclusion process with quenched disorder and large particles
-
Shaw L.B., Sethna J.P., Lee K.H. Mean-field approaches to the totally asymmetric exclusion process with quenched disorder and large particles. Phys. Rev. E 2004, 70(2):021901.
-
(2004)
Phys. Rev. E
, vol.70
, Issue.2
, pp. 021901
-
-
Shaw, L.B.1
Sethna, J.P.2
Lee, K.H.3
-
29
-
-
42749107428
-
Totally asymmetric exclusion process with extended objects: a model for protein synthesis
-
Shaw L.B., Zia R.K.P., Lee K.H. Totally asymmetric exclusion process with extended objects: a model for protein synthesis. Phys. Rev. E 2003, 68(2):021910.
-
(2003)
Phys. Rev. E
, vol.68
, Issue.2
, pp. 021910
-
-
Shaw, L.B.1
Zia, R.K.P.2
Lee, K.H.3
-
30
-
-
33846537916
-
Dynamic model of the process of protein synthesis in eukaryotic cells
-
Skjndal-Bar N., Morris D.R. Dynamic model of the process of protein synthesis in eukaryotic cells. Bull. Math. Biol. 2007, 69:361-393.
-
(2007)
Bull. Math. Biol.
, vol.69
, pp. 361-393
-
-
Skjndal-Bar, N.1
Morris, D.R.2
-
31
-
-
0029992246
-
Depletion in the levels of the release factor eRF1 causes a reduction in the efficiency of translation termination in yeast
-
Stansfield I., Eurwilaichitr L., Akhmaloka, Tuite M. Depletion in the levels of the release factor eRF1 causes a reduction in the efficiency of translation termination in yeast. Mol. Microbiol. 1996, 20:1135-1143.
-
(1996)
Mol. Microbiol.
, vol.20
, pp. 1135-1143
-
-
Stansfield, I.1
Eurwilaichitr, L.2
Akhmaloka3
Tuite, M.4
-
32
-
-
33846820156
-
A model for protein translation: polysome self-organization leads to maximum protein synthesis rates
-
Zouridis H., Hatzimanikatis V. A model for protein translation: polysome self-organization leads to maximum protein synthesis rates. Biophys. J. 2007, 92:717-730.
-
(2007)
Biophys. J.
, vol.92
, pp. 717-730
-
-
Zouridis, H.1
Hatzimanikatis, V.2
-
33
-
-
51049096159
-
Effects of codon distributions and tRNA competition on protein translation
-
Zouridis H., Hatzimanikatis V. Effects of codon distributions and tRNA competition on protein translation. Biophys. J. 2008, 95:1018-1033.
-
(2008)
Biophys. J.
, vol.95
, pp. 1018-1033
-
-
Zouridis, H.1
Hatzimanikatis, V.2
|