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Volumn 17, Issue 4, 2010, Pages 464-472

Prediction of protein subcellular locations with feature selection and analysis

Author keywords

Feature selection; Jackknife cross validation test; Minimum redundancy maximum relevance; Nearest neighbor algorithm; Subcellular location of proteins

Indexed keywords

AMINO ACID; PROTEIN;

EID: 77949983067     PISSN: 09298665     EISSN: None     Source Type: Journal    
DOI: 10.2174/092986610790963654     Document Type: Article
Times cited : (32)

References (94)
  • 1
    • 0242536432 scopus 로고    scopus 로고
    • Mutations in the AIRE gene: Effects on subcellular location and transactivation function of the autoimmune polyendocrinopathy-candidiasis - Ectodermal dystrophy protein
    • Björses, P.; Halonen, M.; Palvimo, J. J.; Kolmer, M.; Aaltonen, J.; Ellonen, P.; Perheentupa, J.; Ulmanen, I.; Peltonen, L. Mutations in the AIRE gene: Effects on subcellular location and transactivation function of the autoimmune polyendocrinopathy-candidiasis - Ectodermal dystrophy protein. Am. J. Hum. Genet., 2000, 66(2), 378-392.
    • (2000) Am. J. Hum. Genet , vol.66 , Issue.2 , pp. 378-392
    • Björses, P.1    Halonen, M.2    Palvimo, J.J.3    Kolmer, M.4    Aaltonen, J.5    Ellonen, P.6    Perheentupa, J.7    Ulmanen, I.8    Peltonen, L.9
  • 3
    • 33646427447 scopus 로고    scopus 로고
    • The peripheral-type benzodiazepine receptor and the cardiovascular system. Implications for drug development
    • Veenman, L.; Gavish, M. The peripheral-type benzodiazepine receptor and the cardiovascular system. Implications for drug development. Pharmacol. Ther., 2006, 110(3), 503-524.
    • (2006) Pharmacol. Ther , vol.110 , Issue.3 , pp. 503-524
    • Veenman, L.1    Gavish, M.2
  • 4
    • 0035874091 scopus 로고    scopus 로고
    • Prediction of protein cellular attributes using pseudoamino acid composition
    • Chou, K. C. Prediction of protein cellular attributes using pseudoamino acid composition. Proteins, 2001, 43 (3), 246-255.
    • (2001) Proteins , vol.43 , Issue.3 , pp. 246-255
    • Chou, K.C.1
  • 5
    • 0037195776 scopus 로고    scopus 로고
    • Using functional domain composition and support vector machines for prediction of protein subcellular location
    • Chou, K. C.; Cai, Y. D. Using functional domain composition and support vector machines for prediction of protein subcellular location. J. Biol. Chem. 2002, 277(48), 45765-45769.
    • (2002) J. Biol. Chem , vol.277 , Issue.48 , pp. 45765-45769
    • Chou, K.C.1    Cai, Y.D.2
  • 6
    • 0032940342 scopus 로고    scopus 로고
    • Protein subcellular location prediction
    • Chou, K. C.; Elrod, D. W. Protein subcellular location prediction. Protein Eng., Des. Sel. 1999, 12(2), 107-118.
    • (1999) Protein Eng., Des. Sel , vol.12 , Issue.2 , pp. 107-118
    • Chou, K.C.1    Elrod, D.W.2
  • 7
    • 0028239038 scopus 로고
    • Discrimination of intracellular and extracellular proteins using amino acid composition and residuepair frequencies
    • Nakashima, H.; Nishikawa, K. Discrimination of intracellular and extracellular proteins using amino acid composition and residuepair frequencies. J. Mol. Biol., 1994, 238(1), 54-61.
    • (1994) J. Mol. Biol , vol.238 , Issue.1 , pp. 54-61
    • Nakashima, H.1    Nishikawa, K.2
  • 8
    • 0037233515 scopus 로고    scopus 로고
    • Subcellular location prediction of apoptosis proteins
    • Zhou, G. P.; Doctor, K. Subcellular location prediction of apoptosis proteins. Proteins, 2003, 50(1), 44-48.
    • (2003) Proteins , vol.50 , Issue.1 , pp. 44-48
    • Zhou, G.P.1    Doctor, K.2
  • 9
    • 33745759451 scopus 로고    scopus 로고
    • Hum-PLoc: A novel ensemble classifier for predicting human protein subcellular localization
    • Chou, K. C.; Shen, H. B. Hum-PLoc: A novel ensemble classifier for predicting human protein subcellular localization. Biochem. Biophys. Res. Commun. 2006, 347(1), 150-157.
    • (2006) Biochem. Biophys. Res. Commun , vol.347 , Issue.1 , pp. 150-157
    • Chou, K.C.1    Shen, H.B.2
  • 10
    • 33846605183 scopus 로고    scopus 로고
    • Large-scale plant protein subcellular location prediction
    • Chou, K. C.; Shen, H. B. Large-scale plant protein subcellular location prediction. J. Cell. Biochem., 2007, 100(3), 665-678.
    • (2007) J. Cell. Biochem , vol.100 , Issue.3 , pp. 665-678
    • Chou, K.C.1    Shen, H.B.2
  • 11
    • 33847080827 scopus 로고    scopus 로고
    • Gpos-PLoc: An ensemble classifier for predicting subcellular localization of Gram-positive bacterial proteins
    • Shen, H. B.; Chou, K. C. Gpos-PLoc: An ensemble classifier for predicting subcellular localization of Gram-positive bacterial proteins. Protein Eng. Des. Sel., 2007, 20(1), 39-46.
    • (2007) Protein Eng. Des. Sel , vol.20 , Issue.1 , pp. 39-46
    • Shen, H.B.1    Chou, K.C.2
  • 12
    • 36448952353 scopus 로고    scopus 로고
    • Nuc-PLoc: A new web-server for predicting protein subnuclear localization by fusing PseAA composition and PsePSSM
    • Shen, H. B.; Chou, K. C. Nuc-PLoc: A new web-server for predicting protein subnuclear localization by fusing PseAA composition and PsePSSM. Protein Eng. Des. Sel., 2007, 20(11), 561-567.
    • (2007) Protein Eng. Des. Sel , vol.20 , Issue.11 , pp. 561-567
    • Shen, H.B.1    Chou, K.C.2
  • 13
    • 33847260136 scopus 로고    scopus 로고
    • Virus-PLoc: A fusion classifier for predicting the subcellular localization of viral proteins within host and virus-infected cells
    • Shen, H. B.; Chou, K. C. Virus-PLoc: A fusion classifier for predicting the subcellular localization of viral proteins within host and virus-infected cells. Biopolymers, 2007, 85(3), 233-240.
    • (2007) Biopolymers , vol.85 , Issue.3 , pp. 233-240
    • Shen, H.B.1    Chou, K.C.2
  • 14
    • 33847637338 scopus 로고    scopus 로고
    • Euk-PLoc: An ensemble classifier for large-scale eukaryotic protein subcellular location prediction
    • Shen, H. B.; Yang, J.; Chou, K. C. Euk-PLoc: An ensemble classifier for large-scale eukaryotic protein subcellular location prediction. Amino Acids, 2007, 33(1), 57-67.
    • (2007) Amino Acids , vol.33 , Issue.1 , pp. 57-67
    • Shen, H.B.1    Yang, J.2    Chou, K.C.3
  • 15
    • 34548606295 scopus 로고    scopus 로고
    • Recent progress in protein subcellular location prediction
    • Chou, K. C.; Shen, H. B. Recent progress in protein subcellular location prediction. Anal. Biochem., 2007, 370(1), 1-16.
    • (2007) Anal. Biochem , vol.370 , Issue.1 , pp. 1-16
    • Chou, K.C.1    Shen, H.B.2
  • 16
    • 39449105071 scopus 로고    scopus 로고
    • Cell-PLoc: A package of Web servers for predicting subcellular localization of proteins in various organisms
    • Chou, K. C.; Shen, H. B. Cell-PLoc: A package of Web servers for predicting subcellular localization of proteins in various organisms. Nat. Protoc., 2008, 3(2), 153-162.
    • (2008) Nat. Protoc , vol.3 , Issue.2 , pp. 153-162
    • Chou, K.C.1    Shen, H.B.2
  • 17
    • 0038705861 scopus 로고    scopus 로고
    • Nearest neighbour algorithm for predicting protein subcellular location by combining functional domain composition and pseudo-amino acid composition
    • Cai, Y. D.; Chou, K. C. Nearest neighbour algorithm for predicting protein subcellular location by combining functional domain composition and pseudo-amino acid composition. Biochem. Biophys. Res. Commun., 2003, 305(2), 407-411.
    • (2003) Biochem. Biophys. Res. Commun , vol.305 , Issue.2 , pp. 407-411
    • Cai, Y.D.1    Chou, K.C.2
  • 18
    • 0029051959 scopus 로고
    • A novel approach to predicting protein structural classes in a (20-1)-D amino acid composition space
    • Chou, K. C. A novel approach to predicting protein structural classes in a (20-1)-D amino acid composition space. Proteins, 1995, 21(4), 319-344.
    • (1995) Proteins , vol.21 , Issue.4 , pp. 319-344
    • Chou, K.C.1
  • 19
    • 3843117638 scopus 로고    scopus 로고
    • Predicting protein structural class by functional domain composition
    • Chou, K. C.; Cai, Y. D. Predicting protein structural class by functional domain composition. Biochem. Biophys. Res. Commun., 2004, 321(4), 1007-1009.
    • (2004) Biochem. Biophys. Res. Commun , vol.321 , Issue.4 , pp. 1007-1009
    • Chou, K.C.1    Cai, Y.D.2
  • 20
    • 33747182577 scopus 로고    scopus 로고
    • Classifier ensembles for protein structural class prediction with varying homology
    • Kedarisetti, K. D.; Kurgan, L.; Dick, S. Classifier ensembles for protein structural class prediction with varying homology. Biochem. Biophys. Res. Commun., 2006, 348(3), 981-988.
    • (2006) Biochem. Biophys. Res. Commun , vol.348 , Issue.3 , pp. 981-988
    • Kedarisetti, K.D.1    Kurgan, L.2    Dick, S.3
  • 21
    • 0141815538 scopus 로고    scopus 로고
    • Predicting protein quaternary structure by pseudo amino acid composition
    • Chou, K. C.; Cai, Y. D. Predicting protein quaternary structure by pseudo amino acid composition. Proteins, 2003, 53(2), 282-289.
    • (2003) Proteins , vol.53 , Issue.2 , pp. 282-289
    • Chou, K.C.1    Cai, Y.D.2
  • 22
    • 65249148484 scopus 로고    scopus 로고
    • Quatldent: A web server for identifying protein quaternary structural attribute by fusing functional domain and sequential evolution information
    • Shen, H. B.; Chou, K. C. Quatldent: A web server for identifying protein quaternary structural attribute by fusing functional domain and sequential evolution information. J. Proteome Res., 2009, 8(3), 1577-1584.
    • (2009) J. Proteome Res , vol.8 , Issue.3 , pp. 1577-1584
    • Shen, H.B.1    Chou, K.C.2
  • 23
    • 62649087986 scopus 로고    scopus 로고
    • Predicting the quaternary structure attribute of a protein by hybridizing functional domain composition and pseudo amino acid composition
    • Xiao, X.; Wang, P.; Chou, K. C. Predicting the quaternary structure attribute of a protein by hybridizing functional domain composition and pseudo amino acid composition. J. Appl. Crystallogr., 2009, 42(2), 169-173.
    • (2009) J. Appl. Crystallogr , vol.42 , Issue.2 , pp. 169-173
    • Xiao, X.1    Wang, P.2    Chou, K.C.3
  • 24
    • 70349613231 scopus 로고    scopus 로고
    • FoldRate: A web-server for predicting protein folding rates from primary sequence
    • Chou, K. C.; Shen, H. B. FoldRate: A web-server for predicting protein folding rates from primary sequence. Open Bioinform. J., 2009, 3, 31-50.
    • (2009) Open Bioinform. J , vol.3 , pp. 31-50
    • Chou, K.C.1    Shen, H.B.2
  • 25
    • 0038636605 scopus 로고    scopus 로고
    • Support vector machines for predicting membrane protein types by using functional domain composition
    • Cai, Y. D.; Zhou, G. P.; Chou, K. C. Support vector machines for predicting membrane protein types by using functional domain composition. Biophys. J., 2003, 84(5), 3257-3263.
    • (2003) Biophys. J , vol.84 , Issue.5 , pp. 3257-3263
    • Cai, Y.D.1    Zhou, G.P.2    Chou, K.C.3
  • 26
    • 34447095147 scopus 로고    scopus 로고
    • MemType-2L: A Web server for predicting membrane proteins and their types by incorporating evolution information through Pse-PSSM
    • Chou, K. C.; Shen, H. B. MemType-2L: A Web server for predicting membrane proteins and their types by incorporating evolution information through Pse-PSSM. Biochem. Biophys. Res. Commun., 2007, 360(2), 339-345.
    • (2007) Biochem. Biophys. Res. Commun , vol.360 , Issue.2 , pp. 339-345
    • Chou, K.C.1    Shen, H.B.2
  • 27
    • 14844285429 scopus 로고    scopus 로고
    • Using functional domain composition to predict enzyme family classes
    • Cai, Y. D.; Chou, K. C. Using functional domain composition to predict enzyme family classes. J. Proteome Res., 2005, 4(1), 109-111.
    • (2005) J. Proteome Res , vol.4 , Issue.1 , pp. 109-111
    • Cai, Y.D.1    Chou, K.C.2
  • 28
    • 13844280973 scopus 로고    scopus 로고
    • Predicting enzyme family classes by hybridizing gene product composition and pseudo-amino acid composition
    • Cai, Y. D.; Zhou, G. P.; Chou, K. C. Predicting enzyme family classes by hybridizing gene product composition and pseudo-amino acid composition. J. Theor. Biol., 2005, 234(1), 145-149.
    • (2005) J. Theor. Biol , vol.234 , Issue.1 , pp. 145-149
    • Cai, Y.D.1    Zhou, G.P.2    Chou, K.C.3
  • 29
    • 35348973511 scopus 로고    scopus 로고
    • EzyPred: A top-down approach for predicting enzyme functional classes and subclasses
    • Shen, H. B.; Chou, K. C. EzyPred: A top-down approach for predicting enzyme functional classes and subclasses. Biochem. Biophys. Res. Commun., 2007, 364(1), 53-59.
    • (2007) Biochem. Biophys. Res. Commun , vol.364 , Issue.1 , pp. 53-59
    • Shen, H.B.1    Chou, K.C.2
  • 30
    • 23944438427 scopus 로고    scopus 로고
    • Prediction of G-protein-coupled receptor classes
    • Chou, K. C. Prediction of G-protein-coupled receptor classes. J. Proteome Res. 2005, 4(4), 1413-1418.
    • (2005) J. Proteome Res , vol.4 , Issue.4 , pp. 1413-1418
    • Chou, K.C.1
  • 31
    • 0036767228 scopus 로고    scopus 로고
    • Bioinformatical analysis of G-proteincoupled receptors
    • Chou, K. C.; Elrod, D. W. Bioinformatical analysis of G-proteincoupled receptors. J. Proteome Res. 2002, 1(5), 429-433.
    • (2002) J. Proteome Res , vol.1 , Issue.5 , pp. 429-433
    • Chou, K.C.1    Elrod, D.W.2
  • 32
    • 64749096548 scopus 로고    scopus 로고
    • GPCR-CA: A cellular automaton image approach for predicting G-protein-coupled receptor functional classes
    • Xiao, X.; Wang, P.; Chou, K. C. GPCR-CA: A cellular automaton image approach for predicting G-protein-coupled receptor functional classes. J. Comput. Chem., 2009, 30, 1414-1423.
    • (2009) J. Comput. Chem , vol.30 , pp. 1414-1423
    • Xiao, X.1    Wang, P.2    Chou, K.C.3
  • 33
    • 53149132374 scopus 로고    scopus 로고
    • ProtIdent: A web server for identifying proteases and their types by fusing functional domain and sequential evolution information
    • Chou, K. C.; Shen, H. B. ProtIdent: A web server for identifying proteases and their types by fusing functional domain and sequential evolution information. Biochem. Biophys. Res. Commun., 2008, 376(2), 321-325.
    • (2008) Biochem. Biophys. Res. Commun , vol.376 , Issue.2 , pp. 321-325
    • Chou, K.C.1    Shen, H.B.2
  • 34
    • 57749188687 scopus 로고    scopus 로고
    • Identification of proteases and their types
    • Shen, H. B.; Chou, K. C. Identification of proteases and their types. Anal. Biochem., 2009, 385(1), 153-160.
    • (2009) Anal. Biochem , vol.385 , Issue.1 , pp. 153-160
    • Shen, H.B.1    Chou, K.C.2
  • 35
    • 0027219970 scopus 로고
    • A vectorized sequence-coupling model for predicting HIV protease cleavage sites in proteins
    • Chou, K. C. A vectorized sequence-coupling model for predicting HIV protease cleavage sites in proteins. J. Biol. Chem., 1993, 268(23), 16938-16948.
    • (1993) J. Biol. Chem , vol.268 , Issue.23 , pp. 16938-16948
    • Chou, K.C.1
  • 36
    • 0030049315 scopus 로고    scopus 로고
    • Prediction of HIV protease cleavage sites in proteins
    • Chou, K. C. Prediction of HIV protease cleavage sites in proteins. Anal. Biochem., 1996, 233, 1-14.
    • (1996) Anal. Biochem. , vol.233 , pp. 1-14
    • Chou, K.C.1
  • 37
    • 40649104302 scopus 로고    scopus 로고
    • HIVcleave: A web-server for predicting HIV protease cleavage sites in proteins
    • Shen, H. B.; Chou, K. C. HIVcleave: a web-server for predicting HIV protease cleavage sites in proteins. Anal. Biochem., 2008, 375, 388-390.
    • (2008) Anal. Biochem , vol.375 , pp. 388-390
    • Shen, H.B.1    Chou, K.C.2
  • 38
    • 34247544233 scopus 로고    scopus 로고
    • Signal-CF: A subsite-coupled and window-fusing approach for predicting signal peptides
    • Chou, K. C.; Shen, H. B. Signal-CF: A subsite-coupled and window-fusing approach for predicting signal peptides. Biochem. Biophys. Res. Commun., 2007, 357(3), 633-640.
    • (2007) Biochem. Biophys. Res. Commun , vol.357 , Issue.3 , pp. 633-640
    • Chou, K.C.1    Shen, H.B.2
  • 39
    • 34748902270 scopus 로고    scopus 로고
    • Signal-3L: A 3-layer approach for predicting signal peptides
    • Shen, H. B.; Chou, K. C. Signal-3L: A 3-layer approach for predicting signal peptides. Biochem. Biophys. Res. Commun., 2007, 363(2), 297-303.
    • (2007) Biochem. Biophys. Res. Commun , vol.363 , Issue.2 , pp. 297-303
    • Shen, H.B.1    Chou, K.C.2
  • 40
    • 3242792729 scopus 로고    scopus 로고
    • Structural bioinformatics and its impact to biomedical science
    • Chou, K. C. Structural bioinformatics and its impact to biomedical science. Curr. Med. Chem. 2004, 11, 2105-2134.
    • (2004) Curr. Med. Chem , vol.11 , pp. 2105-2134
    • Chou, K.C.1
  • 41
    • 45449094954 scopus 로고    scopus 로고
    • Predicting N-terminal acetylation based on feature selection method
    • Cai, Y.-D.; Lu, L. Predicting N-terminal acetylation based on feature selection method. Biochem. Biophys. Res. Commun., 2008, 372(4), 862-865.
    • (2008) Biochem. Biophys. Res. Commun , vol.372 , Issue.4 , pp. 862-865
    • Cai, Y.-D.1    Lu, L.2
  • 42
    • 17644384367 scopus 로고    scopus 로고
    • Minimum redundancy feature selection from microarray gene expression data
    • Ding, C.; Peng, H. Minimum redundancy feature selection from microarray gene expression data. J. Bioinform. Comput. Biol., 2005, 3(2), 185-205.
    • (2005) J. Bioinform. Comput. Biol , vol.3 , Issue.2 , pp. 185-205
    • Ding, C.1    Peng, H.2
  • 43
    • 29244482784 scopus 로고    scopus 로고
    • Predicting membrane protein type by functional domain composition and pseudo-amino acid composition
    • Cai, Y.-D.; Chou, K.-C. Predicting membrane protein type by functional domain composition and pseudo-amino acid composition. J. Theor. Biol., 2006, 238(2), 395.
    • (2006) J. Theor. Biol , vol.238 , Issue.2 , pp. 395
    • Cai, Y.-D.1    Chou, K.-C.2
  • 44
    • 33745634395 scopus 로고    scopus 로고
    • Cd-hit: A fast program for clustering and comparing large sets of protein or nucleotide sequences
    • Li, W.; Godzik, A. Cd-hit: A fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics, 2006, 22(13), 1658-1659.
    • (2006) Bioinformatics , vol.22 , Issue.13 , pp. 1658-1659
    • Li, W.1    Godzik, A.2
  • 45
    • 34249318001 scopus 로고    scopus 로고
    • Euk-mPLoc: A fusion classifier for largescale eukaryotic protein subcellular location prediction by incorporating multiple sites
    • Chou, K. C.; Shen, H. B. Euk-mPLoc: A fusion classifier for largescale eukaryotic protein subcellular location prediction by incorporating multiple sites. J. Proteome Res., 2007, 6(5), 1728-1734.
    • (2007) J. Proteome Res , vol.6 , Issue.5 , pp. 1728-1734
    • Chou, K.C.1    Shen, H.B.2
  • 46
    • 33847668306 scopus 로고    scopus 로고
    • Hum-mPLoc: An ensemble classifier for large-scale human protein subcellular location prediction by incorporating samples with multiple sites
    • Shen, H. B.; Chou, K. C. Hum-mPLoc: An ensemble classifier for large-scale human protein subcellular location prediction by incorporating samples with multiple sites. Biochem. Biophys. Res. Commun., 2007, 355(4), 1006-1011.
    • (2007) Biochem. Biophys. Res. Commun , vol.355 , Issue.4 , pp. 1006-1011
    • Shen, H.B.1    Chou, K.C.2
  • 47
    • 4544322645 scopus 로고    scopus 로고
    • Predicting 22 protein localizations in budding yeast
    • Cai, Y. D.; Chou, K. C. Predicting 22 protein localizations in budding yeast. Biochem. Biophys. Res. Commun., 2004, 323(2), 425-428.
    • (2004) Biochem. Biophys. Res. Commun , vol.323 , Issue.2 , pp. 425-428
    • Cai, Y.D.1    Chou, K.C.2
  • 48
    • 16344396089 scopus 로고    scopus 로고
    • Predicting protein localization in budding yeast
    • Chou, K. C.; Cai, Y. D. Predicting protein localization in budding yeast. Bioinformatics, 2005, 21(7), 944-950.
    • (2005) Bioinformatics , vol.21 , Issue.7 , pp. 944-950
    • Chou, K.C.1    Cai, Y.D.2
  • 49
    • 0022631926 scopus 로고
    • The folding type of a protein is relevant to the amino acid composition
    • Nakashima, H.; Nishikawa, K.; Ooi, T. The folding type of a protein is relevant to the amino acid composition. J. Biochem., 1986, 99(1), 153-162.
    • (1986) J. Biochem , vol.99 , Issue.1 , pp. 153-162
    • Nakashima, H.1    Nishikawa, K.2    Ooi, T.3
  • 50
    • 61849153473 scopus 로고    scopus 로고
    • A novel computational approach to predict transcription factor DNA binding preference
    • Cai, Y.; He, J.; Li, X.; Lu, L.; Yang, X.; Feng, K.; Lu, W.; Kong, X. A novel computational approach to predict transcription factor DNA binding preference. J. Proteome Res., 2009, 8(2), 999-1003.
    • (2009) J. Proteome Res , vol.8 , Issue.2 , pp. 999-1003
    • Cai, Y.1    He, J.2    Li, X.3    Lu, L.4    Yang, X.5    Feng, K.6    Lu, W.7    Kong, X.8
  • 51
    • 60549098659 scopus 로고    scopus 로고
    • Prediction of protein structural classes using hybrid properties
    • Li, W.; Lin, K.; Feng, K.; Cai, Y. Prediction of protein structural classes using hybrid properties. Mol. Diversity, 2008, 12(3-4), 171-179.
    • (2008) Mol. Diversity , vol.12 , Issue.3-4 , pp. 171-179
    • Li, W.1    Lin, K.2    Feng, K.3    Cai, Y.4
  • 52
    • 60349114820 scopus 로고    scopus 로고
    • Prediction of protein-protein interactions based on PseAA composition and hybrid feature selection
    • Liu, L.; Cai, Y.; Lu, W.; Feng, K.; Peng, C.; Niu, B. Prediction of protein-protein interactions based on PseAA composition and hybrid feature selection. Biochem. Biophys. Res. Commun., 2009, 380(2), 318-322.
    • (2009) Biochem. Biophys. Res. Commun , vol.380 , Issue.2 , pp. 318-322
    • Liu, L.1    Cai, Y.2    Lu, W.3    Feng, K.4    Peng, C.5    Niu, B.6
  • 53
    • 46049083380 scopus 로고    scopus 로고
    • Using AdaBoost for the prediction of subcellular location of prokaryotic and eukaryotic proteins. Mol
    • Niu, B.; Jin, Y. H.; Feng, K. Y.; Lu, W. C.; Cai, Y. D.; Li, G. Z. Using AdaBoost for the prediction of subcellular location of prokaryotic and eukaryotic proteins. Mol. Diversity, 2008, 12(1), 41-45.
    • (2008) Diversity , vol.12 , Issue.1 , pp. 41-45
    • Niu, B.1    Jin, Y.H.2    Feng, K.Y.3    Lu, W.C.4    Cai, Y.D.5    Li, G.Z.6
  • 54
    • 33747195620 scopus 로고    scopus 로고
    • A novel computational method to predict transcription factor DNA binding preference
    • Qian, Z.; Cai, Y. D.; Li, Y. A novel computational method to predict transcription factor DNA binding preference. Biochem. Biophys. Res. Commun., 2006, 348(3), 1034-1037.
    • (2006) Biochem. Biophys. Res. Commun , vol.348 , Issue.3 , pp. 1034-1037
    • Qian, Z.1    Cai, Y.D.2    Li, Y.3
  • 55
    • 0035014847 scopus 로고    scopus 로고
    • Multi-class protein fold recognition using support vector machines and neural networks
    • Ding, C. H. Q.; Dubchak, I. Multi-class protein fold recognition using support vector machines and neural networks. Bioinformatics, 2001, 17(4), 349-358.
    • (2001) Bioinformatics , vol.17 , Issue.4 , pp. 349-358
    • Ding, C.H.Q.1    Dubchak, I.2
  • 56
    • 50849087072 scopus 로고    scopus 로고
    • Prediction of compounds' biological function (metabolic pathways) based on functional group composition
    • Cai, Y. D.; Qian, Z.; Lu, L.; Feng, K. Y.; Meng, X.; Niu, B.; Zhao, G. D.; Lu, W. C. Prediction of compounds' biological function (metabolic pathways) based on functional group composition. Mol. Diversity, 2008, 12(2), 131-137.
    • (2008) Mol. Diversity , vol.12 , Issue.2 , pp. 131-137
    • Cai, Y.D.1    Qian, Z.2    Lu, L.3    Feng, K.Y.4    Meng, X.5    Niu, B.6    Zhao, G.D.7    Lu, W.C.8
  • 57
    • 34248581521 scopus 로고    scopus 로고
    • An automatic enzyme classifier based on functional domain composition
    • Lu, L.; Qian, Z.; Cai, Y. D.; Li, Y. ECS: An automatic enzyme classifier based on functional domain composition. Comput. Biol. Chem., 2007, 31(3), 226-232.
    • (2007) Comput. Biol. Chem , vol.31 , Issue.3 , pp. 226-232
    • Lu, L.1    Qian, Z.2    Cai, Y.D.3    Li, Y.E.C.S.4
  • 58
    • 78650172106 scopus 로고    scopus 로고
    • A knowledgebased method to predict the cooperative relationship between transcription factors
    • Lu, L.; Qian, Z.; Shi, X.; Li, H.; Cai, Y. D.; Li, Y. A knowledgebased method to predict the cooperative relationship between transcription factors. Mol. Diversity, 2009, 1-5.
    • (2009) Mol. Diversity , pp. 1-5
    • Lu, L.1    Qian, Z.2    Shi, X.3    Li, H.4    Cai, Y.D.5    Li, Y.6
  • 59
    • 33646510075 scopus 로고    scopus 로고
    • Predicting rRNA-, RNA-, and DNA-binding proteins from primary structure with support vector machines
    • Yu, X.; Cao, J.; Cai, Y.; Shi, T.; Li, Y. Predicting rRNA-, RNA-, and DNA-binding proteins from primary structure with support vector machines. J. Theor. Biol., 2006, 240(2), 175-184.
    • (2006) J. Theor. Biol , vol.240 , Issue.2 , pp. 175-184
    • Yu, X.1    Cao, J.2    Cai, Y.3    Shi, T.4    Li, Y.5
  • 60
    • 44449173150 scopus 로고    scopus 로고
    • Prediction of membrane protein types in a hybrid space
    • Jia, P.; Qian, Z.; Feng, K.; Lu, W.; Li, Y.; Cai, Y. Prediction of membrane protein types in a hybrid space. J. Proteome Res., 2008, 7(3), 1131-1137.
    • (2008) J. Proteome Res , vol.7 , Issue.3 , pp. 1131-1137
    • Jia, P.1    Qian, Z.2    Feng, K.3    Lu, W.4    Li, Y.5    Cai, Y.6
  • 61
    • 77149132508 scopus 로고    scopus 로고
    • Protein sumoylation sites prediction based on two-stage feature selection
    • Lu, L.; Shi, X. H.; Li, S. J.; Xie, Z. Q.; Feng, Y. L.; Lu, W. C.; Li, Y. X.; Li, H.; Cai, Y. D. Protein sumoylation sites prediction based on two-stage feature selection. Mol. Divers., 2010, 14(1), 81-6.
    • (2010) Mol. Divers , vol.14 , Issue.1 , pp. 81-6
    • Lu, L.1    Shi, X.H.2    Li, S.J.3    Xie, Z.Q.4    Feng, Y.L.5    Lu, W.C.6    Li, Y.X.7    Li, H.8    Cai, Y.D.9
  • 62
    • 58149229692 scopus 로고    scopus 로고
    • HIV-1 protease cleavage site prediction based on amino acid property
    • Niu, B.; Lu, L.; Liu, L.; Gu, T. H.; Feng, K.-Y.; Lu, W.-C.; Cai, Y.- D. HIV-1 protease cleavage site prediction based on amino acid property. J. Comput. Chem., 2009, 30(1), 33-39.
    • (2009) J. Comput. Chem , vol.30 , Issue.1 , pp. 33-39
    • Niu, B.1    Lu, L.2    Liu, L.3    Gu, T.H.4    Feng, K.-Y.5    Lu, W.-C.6    Cai Y.-, D.7
  • 63
    • 0029157083 scopus 로고
    • Prediction of protein structural classes
    • Chou, K. C.; Zhang, C. T. Prediction of protein structural classes. Crit. Rev. Biochem. Mol. Biol., 1995, 30(4), 275-349.
    • (1995) Crit. Rev. Biochem. Mol. Biol , vol.30 , Issue.4 , pp. 275-349
    • Chou, K.C.1    Zhang, C.T.2
  • 64
    • 61549096128 scopus 로고    scopus 로고
    • Prediction of protein secondary structure content by using the concept of Chou's pseudo amino acid composition and support vector machine
    • Chen, C.; Chen, L.; Zou, X.; Cai, P. Prediction of protein secondary structure content by using the concept of Chou's pseudo amino acid composition and support vector machine. Protein Pept. Lett., 2009, 16(1), 27-31.
    • (2009) Protein Pept. Lett , vol.16 , Issue.1 , pp. 27-31
    • Chen, C.1    Chen, L.2    Zou, X.3    Cai, P.4
  • 65
    • 65349165718 scopus 로고    scopus 로고
    • Prediction of cell wall lytic enzymes using chou's amphiphilic pseudo amino acid composition
    • Ding, H.; Luo, L.; Lin, H. Prediction of cell wall lytic enzymes using chou's amphiphilic pseudo amino acid composition. Protein Pept. Lett., 2009, 16(4), 351-355.
    • (2009) Protein Pept. Lett. , vol.16 , Issue.4 , pp. 351-355
    • Ding, H.1    Luo, L.2    Lin, H.3
  • 66
    • 48649105466 scopus 로고    scopus 로고
    • Using Chou's pseudo amino acid composition to predict subcellular localization of apoptosis proteins: An approach with immune genetic algorithm-based ensemble classifier
    • Ding, Y. S.; Zhang, T. L. Using Chou's pseudo amino acid composition to predict subcellular localization of apoptosis proteins: An approach with immune genetic algorithm-based ensemble classifier. Pattern Recognit. Lett., 2008, 29(13), 1887-1892.
    • (2008) Pattern Recognit. Lett , vol.29 , Issue.13 , pp. 1887-1892
    • Ding, Y.S.1    Zhang, T.L.2
  • 67
    • 59649123088 scopus 로고    scopus 로고
    • Use of fuzzy clustering technique and matrices to classify amino acids and its impact to Chou's pseudo amino acid composition
    • Georgiou, D. N.; Karakasidis, T. E.; Nieto, J. J.; Torres, A. Use of fuzzy clustering technique and matrices to classify amino acids and its impact to Chou's pseudo amino acid composition. J. Theor. Biol., 2009, 257(1), 17-26.
    • (2009) J. Theor. Biol , vol.257 , Issue.1 , pp. 17-26
    • Georgiou, D.N.1    Karakasidis, T.E.2    Nieto, J.J.3    Torres, A.4
  • 68
    • 43549087105 scopus 로고    scopus 로고
    • Using the concept of Chou's pseudo amino acid composition to predict apoptosis proteins subcellular location: An approach by approximate entropy
    • Jiang, X.; Wei, R.; Zhang, T.; Gu, Q. Using the concept of Chou's pseudo amino acid composition to predict apoptosis proteins subcellular location: An approach by approximate entropy. Protein Pept. Lett., 2008, 15(4), 392-396.
    • (2008) Protein Pept. Lett , vol.15 , Issue.4 , pp. 392-396
    • Jiang, X.1    Wei, R.2    Zhang, T.3    Gu, Q.4
  • 69
    • 47249153247 scopus 로고    scopus 로고
    • Predicting protein subcellular location using Chou's pseudo amino acid composition and improved hybrid approach
    • Li, F. M.; Li, Q. Z. Predicting protein subcellular location using Chou's pseudo amino acid composition and improved hybrid approach. Protein Pept. Lett., 2008, 15(6), 612-616.
    • (2008) Protein Pept. Lett , vol.15 , Issue.6 , pp. 612-616
    • Li, F.M.1    Li, Q.Z.2
  • 70
    • 42749090472 scopus 로고    scopus 로고
    • The modified Mahalanobis Discriminant for predicting outer membrane proteins by using Chou's pseudo amino acid composition
    • Lin, H. The modified Mahalanobis Discriminant for predicting outer membrane proteins by using Chou's pseudo amino acid composition. J. Theor. Biol. 2008, 252(2), 350-356.
    • (2008) J. Theor. Biol , vol.252 , Issue.2 , pp. 350-356
    • Lin, H.1
  • 71
    • 49449087313 scopus 로고    scopus 로고
    • Predicting subcellular localization of mycobacterial proteins by using Chou's pseudo amino acid composition
    • Lin, H.; Ding, H.; Guo, F. B.; Zhang, A. Y.; Huang, J. Predicting subcellular localization of mycobacterial proteins by using Chou's pseudo amino acid composition. Protein Pept. Lett., 2008, 15(7), 739-744.
    • (2008) Protein Pept. Lett , vol.15 , Issue.7 , pp. 739-744
    • Lin, H.1    Ding, H.2    Guo, F.B.3    Zhang, A.Y.4    Huang, J.5
  • 72
    • 15244350269 scopus 로고    scopus 로고
    • Using complexity measure factor to predict protein subcellular location
    • Xiao, X.; Shao, S.; Ding, Y.; Huang, Z.; Huang, Y.; Chou, K. C. Using complexity measure factor to predict protein subcellular location. Amino Acids, 2005, 28(1), 57-61.
    • (2005) Amino Acids , vol.28 , Issue.1 , pp. 57-61
    • Xiao, X.1    Shao, S.2    Ding, Y.3    Huang, Z.4    Huang, Y.5    Chou, K.C.6
  • 73
    • 45649083292 scopus 로고    scopus 로고
    • Predicting the cofactors of oxidoreductases based on amino acid composition distribution and Chou's amphiphilic pseudo-amino acid composition
    • Zhang, G. Y.; Fang, B. S. Predicting the cofactors of oxidoreductases based on amino acid composition distribution and Chou's amphiphilic pseudo-amino acid composition. J. Theor. Biol., 2008, 253(2), 310-315.
    • (2008) J. Theor. Biol , vol.253 , Issue.2 , pp. 310-315
    • Zhang, G.Y.1    Fang, B.S.2
  • 74
    • 54249139729 scopus 로고    scopus 로고
    • Predicting lipase types by improved Chou's pseudo-amino acid composition
    • Zhang, G. Y.; Li, H. C.; Gao, J. Q.; Fang, B. S. Predicting lipase types by improved Chou's pseudo-amino acid composition. Protein Pept. Lett., 2008, 15(10), 1132-1137.
    • (2008) Protein Pept. Lett , vol.15 , Issue.10 , pp. 1132-1137
    • Zhang, G.Y.1    Li, H.C.2    Gao, J.Q.3    Fang, B.S.4
  • 75
    • 34548439881 scopus 로고    scopus 로고
    • Using Chou's amphiphilic pseudo-amino acid composition and support vector machine for prediction of enzyme subfamily classes
    • Zhou, X. B.; Chen, C.; Li, Z. C.; Zou, X. Y. Using Chou's amphiphilic pseudo-amino acid composition and support vector machine for prediction of enzyme subfamily classes. J. Theor. Biol., 2007, 248(3), 546-551.
    • (2007) J. Theor. Biol , vol.248 , Issue.3 , pp. 546-551
    • Zhou, X.B.1    Chen, C.2    Li, Z.C.3    Zou, X.Y.4
  • 76
    • 58149512313 scopus 로고    scopus 로고
    • GalNAc-transferase specificity prediction based on feature selection method
    • Lu, L.; Niu, B.; Zhao, J.; Liu, L.; Lu, W. C.; Liu, X. J.; Li, Y. X.; Cai, Y. D. GalNAc-transferase specificity prediction based on feature selection method. Peptides, 2009, 30(2), 359-364.
    • (2009) Peptides , vol.30 , Issue.2 , pp. 359-364
    • Lu, L.1    Niu, B.2    Zhao, J.3    Liu, L.4    Lu, W.C.5    Liu, X.J.6    Li, Y.X.7    Cai, Y.D.8
  • 77
    • 0031381525 scopus 로고    scopus 로고
    • Wrappers for feature subset selection
    • Kohavi, R.; John, G. H. Wrappers for feature subset selection. Artif. Intell., 1997, 97(1-2), 273.
    • (1997) Artif. Intell , vol.97 , Issue.1-2 , pp. 273
    • Kohavi, R.1    John, G.H.2
  • 78
    • 0037154980 scopus 로고    scopus 로고
    • Protein folding and unfolding at atomic resolution
    • Fersht, A. R.; Daggett, V. Protein folding and unfolding at atomic resolution. Cell, 2002, 108(4), 573-82.
    • (2002) Cell , vol.108 , Issue.4 , pp. 573-82
    • Fersht, A.R.1    Daggett, V.2
  • 79
    • 0034924812 scopus 로고    scopus 로고
    • Folding of newly translated proteins in vivo: The role of molecular chaperones
    • Frydman, J. Folding of newly translated proteins in vivo: the role of molecular chaperones. Annu. Rev. Biochem., 2001, 70, 603-47.
    • (2001) Annu. Rev. Biochem , vol.70 , pp. 603-47
    • Frydman, J.1
  • 80
    • 0037040541 scopus 로고    scopus 로고
    • Molecular chaperones in the cytosol: From nascent chain to folded protein
    • Hartl, F. U.; Hayer-Hartl, M. Molecular chaperones in the cytosol: from nascent chain to folded protein. Science, 2002, 295(5561), 1852-8.
    • (2002) Science , vol.295 , Issue.5561 , pp. 1852-8
    • Hartl, F.U.1    Hayer-Hartl, M.2
  • 81
    • 0028170807 scopus 로고
    • Signal sequence recognition and protein targeting to the endoplasmic reticulum membrane
    • Walter, P.; Johnson, A. E. Signal sequence recognition and protein targeting to the endoplasmic reticulum membrane. Annu. Rev. Cell Biol., 1994, 10, 87-119.
    • (1994) Annu. Rev. Cell Biol , vol.10 , pp. 87-119
    • Walter, P.1    Johnson, A.E.2
  • 82
    • 0027985063 scopus 로고
    • Secretory proteins move through the endoplasmic reticulum membrane via an aqueous, gated pore
    • Crowley, K. S.; Liao, S.; Worrell, V. E.; Reinhart, G. D.; Johnson, A. E. Secretory proteins move through the endoplasmic reticulum membrane via an aqueous, gated pore. Cell, 1994, 78(3), 461-71.
    • (1994) Cell , vol.78 , Issue.3 , pp. 461-71
    • Crowley, K.S.1    Liao, S.2    Worrell, V.E.3    Reinhart, G.D.4    Johnson, A.E.5
  • 83
    • 0022827170 scopus 로고
    • Mechanism of protein translocation across the endoplasmic reticulum membrane
    • Walter, P.; Lingappa, V. R. Mechanism of protein translocation across the endoplasmic reticulum membrane. Annu. Rev. Cell Biol., 1986, 2, 499-516.
    • (1986) Annu. Rev. Cell Biol , vol.2 , pp. 499-516
    • Walter, P.1    Lingappa, V.R.2
  • 84
    • 50649125304 scopus 로고    scopus 로고
    • Structure and mechanics of membrane proteins. Annu. Rev
    • Engel, A.; Gaub, H. E. Structure and mechanics of membrane proteins. Annu. Rev. Biochem., 2008, 77, 127-48.
    • (2008) Biochem , vol.77 , pp. 127-48
    • Engel, A.1    Gaub, H.E.2
  • 85
    • 0023920458 scopus 로고
    • Mitochondrial presequences
    • Roise, D.; Schatz, G. Mitochondrial presequences. J. Biol. Chem., 1988, 263(10), 4509-11.
    • (1988) J. Biol. Chem , vol.263 , Issue.10 , pp. 4509-11
    • Roise, D.1    Schatz, G.2
  • 86
    • 0028123205 scopus 로고
    • Mitochondrial protein import: Mechanisms, components and energetics
    • Schwarz, E.; Neupert, W. Mitochondrial protein import: mechanisms, components and energetics. Biochim. Biophys. Acta, 1994, 1187(2), 270-4.
    • (1994) Biochim. Biophys. Acta , vol.1187 , Issue.2 , pp. 270-4
    • Schwarz, E.1    Neupert, W.2
  • 87
    • 0024542834 scopus 로고
    • Domain structure of mitochondrial and chloroplast targeting peptides
    • von Heijne, G.; Steppuhn, J.; Herrmann, R. G. Domain structure of mitochondrial and chloroplast targeting peptides. Eur. J. Biochem., 1989, 180(3), 535-45.
    • (1989) Eur. J. Biochem , vol.180 , Issue.3 , pp. 535-45
    • von Heijne, G.1    Steppuhn, J.2    Herrmann, R.G.3
  • 88
    • 34249683488 scopus 로고    scopus 로고
    • Membrane protein structure: Prediction versus reality
    • Elofsson, A.; von Heijne, G. Membrane protein structure: prediction versus reality. Annu. Rev. Biochem., 2007, 76, 125-140.
    • (2007) Annu. Rev. Biochem , vol.76 , pp. 125-140
    • Elofsson, A.1    von Heijne, G.2
  • 89
    • 0026646504 scopus 로고
    • Secondary structure and folding of a functional chloroplast precursor protein
    • Pilon, M.; Rietveld, A. G.; Weisbeek, P. J.; de Kruijff, B. Secondary structure and folding of a functional chloroplast precursor protein. J. Biol. Chem., 1992, 267(28), 19907-13.
    • (1992) J. Biol. Chem , vol.267 , Issue.28 , pp. 19907-13
    • Pilon, M.1    Rietveld, A.G.2    Weisbeek, P.J.3    de Kruijff, B.4
  • 90
    • 0029898244 scopus 로고    scopus 로고
    • Global properties of the mapping between local amino acid sequence and local structure in proteins
    • Han, K. F.; Baker, D. Global properties of the mapping between local amino acid sequence and local structure in proteins. Proc. Natl. Acad. Sci. USA, 1996, 93(12), 5814-8.
    • (1996) Proc. Natl. Acad. Sci. Usa , vol.93 , Issue.12 , pp. 5814-8
    • Han, K.F.1    Baker, D.2
  • 91
    • 0032519692 scopus 로고    scopus 로고
    • Structural diversity of sequentially identical subsequences of proteins: Identical octapeptides can have different conformations
    • Sudarsanam, S. Structural diversity of sequentially identical subsequences of proteins: identical octapeptides can have different conformations. Proteins, 1998, 30(3), 228-31.
    • (1998) Proteins , vol.30 , Issue.3 , pp. 228-31
    • Sudarsanam, S.1
  • 92
    • 0026608073 scopus 로고
    • Environment affects amino acid preference for secondary structure
    • Zhong, L.; Johnson, W. C., Jr. Environment affects amino acid preference for secondary structure. Proc. Natl. Acad. Sci. USA, 1992, 89(10), 4462-5.
    • (1992) Proc. Natl. Acad. Sci. Usa , vol.89 , Issue.10 , pp. 4462-5
    • Zhong, L.1    Johnson Jr., W.C.2
  • 93
    • 72449203319 scopus 로고    scopus 로고
    • Pseudo amino acid composition and its applications in bioinformatics, proteomics and system biology
    • Chou, K. C. Pseudo amino acid composition and its applications in bioinformatics, proteomics and system biology. Curr. Proteomics, 2009, 6, 262-274.
    • (2009) Curr. Proteomics , vol.6 , pp. 262-274
    • Chou, K.C.1
  • 94
    • 77649339280 scopus 로고    scopus 로고
    • Review: Recent advances in developing web-servers for predicting protein attributes
    • Chou, K. C.; Shen, H. B. Review: recent advances in developing web-servers for predicting protein attributes. Nat. Sci., 2009, 2, 63-92.
    • (2009) Nat. Sci , vol.2 , pp. 63-92
    • Chou, K.C.1    Shen, H.B.2


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