메뉴 건너뛰기




Volumn 50, Issue 3, 2010, Pages 368-379

Inhibitors of PIM-1 kinase: A computational analysis of the binding free energies of a range of imidazo [1,2-b] Pyridazines

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACIDS; COMPUTATIONAL METHODS; ENZYMES; FREE ENERGY; MOLECULAR DYNAMICS; PLASMA INTERACTIONS;

EID: 77949855645     PISSN: 15499596     EISSN: 1549960X     Source Type: Journal    
DOI: 10.1021/ci9003514     Document Type: Article
Times cited : (20)

References (31)
  • 1
    • 57749188299 scopus 로고    scopus 로고
    • Targeting cancer with small molecule kinase inhibitors
    • Zhang, J.; Yang, P.; Gray, N. Targeting cancer with small molecule kinase inhibitors. Nat. Rev. Cancer 2009, 9 (1), 28-39.
    • (2009) Nat. Rev. Cancer , vol.9 , Issue.1 , pp. 28-39
    • Zhang, J.1    Yang, P.2    Gray, N.3
  • 4
    • 53249137796 scopus 로고    scopus 로고
    • Potential roles for the PIM1 kinase in human cancer - A molecular and therapeutic appraisal
    • Shah, N.; Pang, B.; Yeoh, K.-G.; Thorn, S.; Chen, C.; Lilly, M.; SaltoTellez, M. Potential roles for the PIM1 kinase in human cancer - A molecular and therapeutic appraisal. Eur. J. Cancer 2008, 44 (15), 2144-2151.
    • (2008) Eur. J. Cancer , vol.44 , Issue.15 , pp. 2144-2151
    • Shah, N.1    Pang, B.2    Yeoh, K.-G.3    Thorn, S.4    Chen, C.5    Lilly, M.6    Saltotellez, M.7
  • 5
    • 58149102549 scopus 로고    scopus 로고
    • Assessment of chemical coverage of kinome space and its implications for kinase drug discovery
    • Bamborough, P.; Drewry, D.; Harper, G.; Smith, G.; Schneider, K. Assessment of Chemical Coverage of Kinome Space and Its Implications for Kinase Drug Discovery. J. Med Chem. 2008, 51 (24), 7898-7914.
    • (2008) J. Med Chem. , vol.51 , Issue.24 , pp. 7898-7914
    • Bamborough, P.1    Drewry, D.2    Harper, G.3    Smith, G.4    Schneider, K.5
  • 7
    • 48549096958 scopus 로고    scopus 로고
    • Pim Kinases Promote Cell Cycle Progression by Phosphorylating and Downregulating p27Kipl at the Transcriptional and Posttranscriptional Levels
    • Morishita, D.; Katayama, R.; Sekimizu, K.; Tsuruo, T. Pim Kinases Promote Cell Cycle Progression by Phosphorylating and Downregulating p27Kipl at the Transcriptional and Posttranscriptional Levels. Cancer Res. 2008, 68 (13), 5076-5085.
    • (2008) Cancer Res. , vol.68 , Issue.13 , pp. 5076-5085
    • Morishita, D.1    Katayama, R.2    Sekimizu, K.3    Tsuruo, T.4
  • 8
    • 28144464847 scopus 로고    scopus 로고
    • Structural Basis of Inhibitor Specificity of the Human Protooncogene Proviral Insertion Site in Moloney Murine Leukemia Virus (PIM-1) Kinase
    • Bullock, A. N.; Debreczeni, J. E.; Fedorov, O. Y.; Nelson, A.; Marsden, B. D.; Knapp, S. Structural Basis of Inhibitor Specificity of the Human Protooncogene Proviral Insertion Site in Moloney Murine Leukemia Virus (PIM-1) Kinase. J. Med. Chem. 2005, 48 (24), 7604-7614.
    • (2005) J. Med. Chem. , vol.48 , Issue.24 , pp. 7604-7614
    • Bullock, A.N.1    Debreczeni, J.E.2    Fedorov, O.Y.3    Nelson, A.4    Marsden, B.D.5    Knapp, S.6
  • 11
    • 33847058740 scopus 로고    scopus 로고
    • Identification and structure-activity relationships of substituted pyridones as inhibitors of Pim-1 kinase
    • Cheney, I. W.; Yan, S.; Appleby, T.; Walker, H.; Vo, T.; Yao, N.; Hamatake, R.; Hong, Z.; Wu, J. Z. Identification and structure-activity relationships of substituted pyridones as inhibitors of Pim-1 kinase. Bioorg. Med Chem. Lett. 2007, 17 (6), 1679-1683.
    • (2007) Bioorg. Med Chem. Lett. , vol.17 , Issue.6 , pp. 1679-1683
    • Cheney, I.W.1    Yan, S.2    Appleby, T.3    Walker, H.4    Vo, T.5    Yao, N.6    Hamatake, R.7    Hong, Z.8    Wu, J.Z.9
  • 13
    • 59449108140 scopus 로고    scopus 로고
    • Synthesis and evaluation of novel inhibitors of pim-1 and pim-2 protein kinases
    • Xia, Z.; Knaak, C.; Ma, J.; Beharry, Z.; Mclnnes, C.; Wang, W.; Kraft, A.; Smith, C. Synthesis and Evaluation of Novel Inhibitors of Pim-1 and Pim-2 Protein Kinases. J. Med. Chem. 2009, 52 (1), 74-86.
    • (2009) J. Med. Chem. , vol.52 , Issue.1 , pp. 74-86
    • Xia, Z.1    Knaak, C.2    Ma, J.3    Beharry, Z.4    Mclnnes, C.5    Wang, W.6    Kraft, A.7    Smith, C.8
  • 14
    • 16244377514 scopus 로고    scopus 로고
    • Crystal structures of protooncogene kinase pim1: a target of aberrant somatic hypermutations in diffuse large cell Lymphoma
    • Kumar, A.; Mandiyan, V.; Suzuki, Y.; Zhang, C.; Rice, J.; Tsai, J.; Artis, D. R.; Ibrahim, P.; Bremer, R. Crystal Structures of Protooncogene Kinase Pim1: A Target of Aberrant Somatic Hypermutations in Diffuse Large Cell Lymphoma. J. Mol. Biol. 2005, 348 (1), 183-193.
    • (2005) J. Mol. Biol. , vol.348 , Issue.1 , pp. 183-193
    • Kumar, A.1    Mandiyan, V.2    Suzuki, Y.3    Zhang, C.4    Rice, J.5    Tsai, J.6    Artis, D.R.7    Ibrahim, P.8    Bremer, R.9
  • 15
    • 33750735037 scopus 로고    scopus 로고
    • Structural basis for induced-fit binding of rhokinase to the inhibitor y-27632
    • Yamaguchi, H.; Miwa, Y.; Kasa, M.; Kitano, K.; Amano, M.; Kaibuchi, K.; Hakoshima, T. Structural Basis for Induced-Fit Binding of RhoKinase to the Inhibitor Y-27632. J. Biochem. 2006, 140 (3), 305-311.
    • (2006) J. Biochem. , vol.140 , Issue.3 , pp. 305-311
    • Yamaguchi, H.1    Miwa, Y.2    Kasa, M.3    Kitano, K.4    Amano, M.5    Kaibuchi, K.6    Hakoshima, T.7
  • 16
    • 53249144547 scopus 로고    scopus 로고
    • A molecular mechanism of P-loop pliability of Rho-kinase investigated by molecular dynamic simulation
    • Gohda, K.; Hakoshima, T. A molecular mechanism of P-loop pliability of Rho-kinase investigated by molecular dynamic simulation. J. Comput-Aided Mol. Des. 2008, 22 (11), 789-797.
    • (2008) J. Comput-Aided Mol. Des. , vol.22 , Issue.11 , pp. 789-797
    • Gohda, K.1    Hakoshima, T.2
  • 17
    • 17144422830 scopus 로고    scopus 로고
    • Pim-1 Ligand-bound Structures Reveal the Mechanism of Serine/Threonine Kinase Inhibition by LY294002
    • Jacobs, M. D.; Black, J.; Futer, O.; Swenson, L.; Hare, B.; Fleming, M.; Saxena, K. Pim-1 Ligand-bound Structures Reveal the Mechanism of Serine/Threonine Kinase Inhibition by LY294002. J. Biol. Chem. 2005, 280 (14), 13728-13734.
    • (2005) J. Biol. Chem. , vol.280 , Issue.14 , pp. 13728-13734
    • Jacobs, M.D.1    Black, J.2    Futer, O.3    Swenson, L.4    Hare, B.5    Fleming, M.6    Saxena, K.7
  • 19
    • 16344382388 scopus 로고    scopus 로고
    • Thermodynamic stability of carbonic anhydrase: Measurements of binding affinity and stoichiometry using thermofluor
    • Matulis, D.; Kranz, J. K.; Salemme, F. R.; Todd, M. J. Thermodynamic Stability of Carbonic Anhydrase: Measurements of Binding Affinity and Stoichiometry Using ThermoFluor. Biochemistry 2005, 44 (13), 5258-5266.
    • (2005) Biochemistry , vol.44 , Issue.13 , pp. 5258-5266
    • Matulis, D.1    Kranz, J.K.2    Salemme, F.R.3    Todd, M.J.4
  • 20
    • 33444462876 scopus 로고    scopus 로고
    • Chapter 13 targeting the kinome with computational chemistry
    • Lamb, M. L.; David, C. S. Chapter 13 Targeting the Kinome with Computational Chemistry. In. Annu. Rep. Comput. Chem. 2005, 1, 185-202.
    • (2005) Annu. Rep. Comput. Chem. , vol.1 , pp. 185-202
    • Lamb, M.L.1    David, C.S.2
  • 21
    • 34547689097 scopus 로고    scopus 로고
    • Comparative molecular field analysis of flavonoid inhibitors of the PIM-1 kinase
    • Holder, S.; Lilly, M.; Brown, L. Comparative molecular field analysis of flavonoid inhibitors of the PIM-1 kinase. Bioorg. Med. Chem. 2007, 15 (19), 6463-6473.
    • (2007) Bioorg. Med. Chem. , vol.15 , Issue.19 , pp. 6463-6473
    • Holder, S.1    Lilly, M.2    Brown, L.3
  • 22
    • 41149093037 scopus 로고    scopus 로고
    • Docking study yields four novel inhibitors of the protooncogene pim-1 kinase
    • Pierce, A.; Jacobs, M.; Stuver-Moody, C. Docking Study Yields Four Novel Inhibitors of the Protooncogene Pim-1 Kinase. J. Med. Chem. 2008, 51 (6), 1972-1975.
    • (2008) J. Med. Chem. , vol.51 , Issue.6 , pp. 1972-1975
    • Pierce, A.1    Jacobs, M.2    Stuver-Moody, C.3
  • 23
    • 65249154272 scopus 로고    scopus 로고
    • Standard Free Energy of Binding from a One-Dimensional Potential of Mean Force
    • Doudou, S.; Burton, N. A.; Henchman, R. H. Standard Free Energy of Binding from a One-Dimensional Potential of Mean Force. J. Chem. Theory Comput. 2009, 5 (4), 909-918.
    • (2009) J. Chem. Theory Comput. , vol.5 , Issue.4 , pp. 909-918
    • Doudou, S.1    Burton, N.A.2    Henchman, R.H.3
  • 26
    • 0001041959 scopus 로고    scopus 로고
    • Efficient generation of high-quality atomic charges. AM1-BCC model: I. Method
    • Jakalian, A.; Bush, B. L.; Jack, D. B.; Bayly, C. I. Fast, efficient generation of high-quality atomic charges. AM1-BCC model: I. Method. J. Comput. Chem. 2000, 21 (2), 132-146.
    • (2000) J. Comput. Chem. , vol.21 , Issue.2 , pp. 132-146
    • Jakalian, A.1    Bush, B.L.2    Jack, D.B.3    Fast, B.C.I.4
  • 28
    • 84986519238 scopus 로고
    • The weighted histogram analysis method for free-energy calculations on biomolecules. I. the method
    • Kumar, S.; Rosenberg, J. M.; Bouzida, D.; Swendsen, R. H.; Kollman, P. A. The weighted histogram analysis method for free-energy calculations on biomolecules. I. The method. J. Comput. Chem. 1992, 13(8), 1011-1021.
    • (1992) J. Comput. Chem. , vol.13 , Issue.8 , pp. 1011-1021
    • Kumar, S.1    Rosenberg, J.M.2    Bouzida, D.3    Swendsen, R.H.4    Kollman, P.A.5
  • 29
    • 34547555018 scopus 로고    scopus 로고
    • Exploring reaction pathways with transition path and umbrella sampling: Application to methyl maltoside
    • Dimelow, R. J.; Bryce, R. A.; Masters, A. J.; Hillier, I. H.; Burton, N. A. Exploring reaction pathways with transition path and umbrella sampling: Application to methyl maltoside. J. Chem. Phys. 2006, 124 (11), 114113-114128.
    • (2006) J. Chem. Phys. , vol.124 , Issue.11 , pp. 114113-114128
    • Dimelow, R.J.1    Bryce, R.A.2    Masters, A.J.3    Hillier, I.H.4    Burton, N.A.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.