Quantitative genotyping for the astringency locus in hexaploid persimmon cultivars using quantitative real-time PCR

Journal of the American Society for Horticultural Science

Volumn 135, Issue 1, 2010, Pages 59-66

  Akagi, Takashi ^a   Takeda, Yumi ^a   Yonemori, Keizo ^a   Ikegami, Ayako ^b   Kono, Atsushi ^c   Yamada, Masahiko ^c,e   Kanzaki, Shinya ^d  

^a KYOTO UNIVERSITY   (Japan)

^b ISHIKAWA PREFECTURAL UNIVERSITY   (Japan)

^c NATIONAL INSTITUTE OF FRUIT TREE SCIENCE   (Japan)

^d KINKI UNIVERSITY   (Japan)

^e National Agriculture and Food Research Organization   (Japan)

Author keywords

Allele dosage; Diospyros kaki; Polyploid plant

Indexed keywords

DIOSPYROS; DIOSPYROS KAKI;

EID: 77949548665     PISSN: 00031062     EISSN: None     Source Type: Journal    
DOI: 10.21273/jashs.135.1.59     Document Type: Article

References (36)

1. Akagi, T., A. Ikegami, Y. Suzuki, J. Yoshida, M. Yamada, A. Sato, and K. Yonemori. 2009a. Expression balances of structural genes in shikimate and flavonoid biosynthesis cause a difference in proan-thocyanidin accumulation in persimmon (Diospyros kaki Thunb.) fruit. Planta 230:899-915.
2. Akagi, T. and K. Yonemori. 2008. Analysis of heterogeneous in-heritance mode of the astringency trait of persimmon fruit by the typing of molecular markers. Hort Res. (Japan) 7(supplement 2):130 (Abstr.). (In Japanese).
3. Akagi, T., S. Kanzaki, M. Gao, R. Tao, D.E. Parfitt, and K. Yonemori. 2009b. Quantitative real-time PCR to determine allele number for the astringency locus by analysis of a linked marker in Diosypros kaki Thunb.Tree Genet. Genomes 5:483-492.
4. Bond, U., C. Neal, D. Donnelly, and T.C. James. 2004. Aneuploidy and copy number breakpoints in the genome of large yeasts mapped by microarray hybridization. Curr. Genet. 45:360-370.
5. Cervantes-Flores, J.C., G.C. Yencho, A. Kriegner, K.V. Pecota, M.A. Faulk, R.O.M. Mwanga, and B. Sosinski. 2008a. Development of a genetic linkage map and identification of homologous linkage groups in sweetpotato using multiple-dose AFLP markers. Mol. Breed. 21:511-532.
6. Cervantes-Flores, J.C., G.C. Yencho, K.V. Pecota, B. Sosinski, and R.O.M. Mwanga. 2008b. Detection of quantitative trait loci and inheritance of root-knot nematode resistance in sweetpotato. J. Amer. Soc. Hort. Sci. 133:844-851.
7. Comai, L. 2005. The advantages and disadvantages of being polyploid. Nat. Genet. 6:836-846.
8. Doyle, J.I. and J.L. Doyle. 1987. A rapid DNA isolation procedure for small quantities or fresh leaf tissue of woody plants. Biotechniques 19:11-15.
9. D'Surney, S.J., L.R. Shugart, and C.W. Theodorakis. 2001. Genetic markers and genotyping methodologies: An overview. Ecotoxicology 10:201-204.
10. Garcia, A.A.F., E.A. Kido, A.N. Meza, H.M.B. Souza, L.R. Pinto, M.M. Pastina, C.S. Leite, J.A.G. da Silva, E.C. Ulian, A. Figueira, and A.P. Souza. 2006. Development of an integrated genetic map of a sugarcane (Saccharum spp.) commercial cross, based on a maximum-likelihood approach for estimation of linkage and linkage phases. Theor. Appl. Genet. 112:298-314.
11. Hauck, N.R., H. Yamane, R. Tao, and A.F. Iezzoni. 2006. Accumu-lation of nonfunctional S-haplotypes results in the breakdown of gametophytic self-incompatibility in tetraploid Prunus. Genetics 172:1191-1198.
12. Henry, I.M., B.P. Dilkes, and L. Comai. 2006. Molecular karyotyping and aneuploidy detection in Arabidopsis thaliana using quantitative fluorescent polymerase chain reaction. Plant J. 48:307-319.
13. Ikegami, A., S. Eguchi, A. Kitajima, K. Inoue, and K. Yonemori. 2007. Identification of genes involved in proanthocyanidin bio-synthesis of persimmon (Diospyros kaki) fruit. Plant Sci. 172:1037-1047.
14. Ikegami, A., S. Eguchi, A. Sato, M. Yamada, A. Kitajima, N. Mitani, and K. Yonemori. 2006. Segregations of astringent progenies in the F1 populations derived from crosses between a Chinese pollination-constant non-astringent (PCNA) 'Luo Tian Tian Shi', and Japanese PCNA and pollination-constant, astringent (PCA) cultivars. Hort-Science 41:561-563.
15. Ikeda, I., M. Yamada, A. Kurihara, and T. Nishida. 1985. Inheritance of astringency in japanese persimmon. J. Jpn. Soc. Hort. Sci. 54:39-45 (in Japanese with English summary).
16. Kanzaki, S., A. Sato, M. Yamada, K. Yonemori, and A. Sugiura. 2001. Identification of molecular markers linked to the trait of natural astringency loss japanese persimmon (Diospyros kaki) fruit. J. Amer. Soc. Hort. Sci. 126:51-55.
17. Kanzaki, S., A. Sato, M. Yamada, N. Utsunomiya, A. Kitajima, A. Ikegami, and K. Yonemori. 2008. RFLP markers for the selection of pollination-constant and non-astringent (PCNA)-type persimmon and examination of the inheritance mode of the markers. J. Jpn. Soc. Hort. Sci. 77:28-32.
18. Kanzaki, S., M. Yamada, A. Sato, N. Mitani, N. Utsunomiya, and K. Yonemori. 2009. Conversion of RFLP markers for the selection of pollination-constant and non-astringent type persimmon (Diospyros kaki Thunb.) into PCR-based markers. J. Jpn. Soc. Hort. Sci. 78: 68-73.
19. Kanzaki, S., M. Kimura, M. Yamada, N. Mitani, T. Akagi, N. Utsunomiya, and K. Yonemori. 2007. Segregation of fruit astrin-gency type and selection of PCNA offspring using RFLP marker in the BC1 progeny derived from 'Kurokuma' persimmon. Hort Res. (Japan) 6(supplement 1):356 (Abstr.). (In Japanese)
20. Kikuchi, A. 1948. Pomology: Part I. Yokendo, Tokyo. (in Japanese)
21. Kriegner, A., J.C. Cervantes, K. Burg, R.O.M. Mwanga, and D.P. Zhang. 2003. A genetic linkage map of sweetpotato [Ipomoea batatas (L.) Lam.] based on AFLP markers. Mol. Breed. 11:169-185.
22. Le Cunff, L., O. Garsmeur, L.M. Raboin, J. Pauquet, H. Telismart, A. Selvi, L. Grivet, R. Philippe, D. Begum, M. Deu, L. Costet, R. Wing, J.C. Glaszmann, and A. D'Hont. 2008. Diploid/polyploid syntenic shuttle mapping and haplotype-specific chromosome walking toward a rust resistance gene (Bru1) in highly polyploid sugarcane (2n;12x;115). Genetics 180:649-660.
23. Luo, Z.W., Z. Zhang, L. Leach, R.M. Zhang, J.E. Bradshaw, and M.J. Kearsey. 2006. Constructing genetic linkage maps under a tetrasomic model. Genetics 172:2635-2645.
24. Ming, R., Y.W. Wang, X. Draye, P.H. Moore, J.E. Irvine, and A.H. Paterson. 2002. Molecular dissection of complex traits in autopoly-ploids: Mapping QTLs affecting sugar yield and related traits in sugarcane. Theor. Appl. Genet. 105:332-345.
25. Namikawa, I. and M. Higashi. 1928. On the number of chromosomes in Diospyros kaki L. f. and Diospyros lotus L. Bot. Mag. (Tokyo) 42:436-438.
26. Ochshorn, Y., A. Bar-Shira, A. Jonish, and Y. Yaron. 2006. Rapid prenatal diagnosis of aneuploidy for chromosome 21, 18, 13, and X by quantitative fluorescence polymerase chain reaction. Fetal Diagn. Ther. 21:326-331.
27. Song, P., C. Cai, M. Skokut, B. Kosegi, and J. Petolino. 2002. Quantitative real-time PCR as a screening tool for estimating transgene copy number in WHISKERSTM-derived transgenic maize. Plant Cell Rep. 20:948-954.
28. Tamura, M., R. Tao, K. Yonemori, N. Utsunomiya, and A. Sugiura. 1998. Ploidy level and genome size of several Diospyros species. J. Jpn. Soc. Hort. Sci. 67:306-312.
29. Wang, R., Y. Yang, and G. Li. 1997. Chinese persimmon germplasm resources. Acta Hort. 436:43-50.
30. Yamada, M. 2005. Persimmon genetic resources and breeding in Japan. Acta Hort. 685:51-64.
31. Yamada, M. and A. Sato. 2002. Segregation for fruit astringency type in progenies derived from crosses of 'Nishimura-wase' pollination constant non-astringent genotypes in oriental persimmon (Diospyros kaki Thunb). Scientia Hort. 92:107-111.
32. Yamada, M., H. Yamane,and K. Ukai. 1994. Genetic analysis of japanese persimmon fruit weight. J. Amer. Soc. Hort. Sci. 119:1298-1302
33. Yonemori, K., A. Sugiura, and M. Yamada. 2000. Persimmon genetics and breeding. Plant Breed. Rev. 19:191-225.
34. Zhuang, D.H., A. Kitajima, and M. Ishida. 1990a. Chromosome number of japanese persimmon cv. 'Miyazakitanenashi' and 'Watar-isawa', and meiotic division in cv. 'Zenjimaru'. J. Jpn. Soc. Hort. Sci. 59(supplement 1):106-107 (Abstr.). (In Japanese).
35. Zhuang, D.H., A. Kitajima, M. Ishida, and Y. Sobajima. 1990b. Chromosome numbers of Diospyros kaki cultivars. J. Jpn. Soc. Hort. Sci. 59:289-297. (In Japanese with English summary).
36. Zimmermann, B., W. Holzgreve, F. Wenzel, and S. Hahn. 2002. Novel real-time quantitative PCR Test for Trisomy 21. Clin. Chem.48:362-363.