-
1
-
-
58549088341
-
Microbial eukaryotes in the hypersaline anoxic L'Atalante deep-sea basin
-
Alexander E, Stock A, Breiner HW, Behnke A, Bunge J, Yakimov MM Stoeck T (2009) Microbial eukaryotes in the hypersaline anoxic L'Atalante deep-sea basin. Environ Microbiol 11 : 360 381.
-
(2009)
Environ Microbiol
, vol.11
, pp. 360-381
-
-
Alexander, E.1
Stock, A.2
Breiner, H.W.3
Behnke, A.4
Bunge, J.5
Yakimov, M.M.6
Stoeck, T.7
-
2
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
Altschul SF, Madden TL, Schäffer AA, Zhang J, Zhang Z, Miller W Lipman DJ (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25 : 3389 3402.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schäffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
3
-
-
0022235941
-
Studies on ciliated protozoa in eutrophic lakes.1. Seasonal distribution in relation to thermal stratification and hypolimnetic anoxia
-
Bark AW (1985) Studies on ciliated protozoa in eutrophic lakes.1. Seasonal distribution in relation to thermal stratification and hypolimnetic anoxia. Hydrobiologia 124 : 167 176.
-
(1985)
Hydrobiologia
, vol.124
, pp. 167-176
-
-
Bark, A.W.1
-
4
-
-
0022190267
-
Studies on ciliated protozoa in eutrophic lakes.2. Field and laboratory studies on the effects of oxygen and other chemical gradients on ciliate distribution
-
Bark AW Goodfellow JG (1985) Studies on ciliated protozoa in eutrophic lakes.2. Field and laboratory studies on the effects of oxygen and other chemical gradients on ciliate distribution. Hydrobiologia 124 : 177 188.
-
(1985)
Hydrobiologia
, vol.124
, pp. 177-188
-
-
Bark, A.W.1
Goodfellow, J.G.2
-
5
-
-
33646579538
-
2S gradient in a supersulfidic anoxic fjord (Framvaren, Norway)
-
2S gradient in a supersulfidic anoxic fjord (Framvaren, Norway). Appl Environ Microb 72 : 3626 3636.
-
(2006)
Appl Environ Microb
, vol.72
, pp. 3626-3636
-
-
Behnke, A.1
Bunge, J.2
Barger, K.3
Breiner, H.-W.4
Alla, V.5
Stoeck, T.6
-
6
-
-
0037088106
-
Food concentration-dependent regulation of food selectivity of interception-feeding bacterivorous nanoflagellates
-
Boenigk J, Matz C, Jürgens K Arndt H (2002) Food concentration-dependent regulation of food selectivity of interception-feeding bacterivorous nanoflagellates. Aquat Microb Ecol 27 : 195 202.
-
(2002)
Aquat Microb Ecol
, vol.27
, pp. 195-202
-
-
Boenigk, J.1
Matz, C.2
Jürgens, K.3
Arndt, H.4
-
7
-
-
17844394957
-
High diversity of the 'Spumella-like' flagellates: An investigation based on the SSU rRNA gene sequences of isolates from habitats located in six different geographic regions
-
Boenigk J, Pfandl K, Stadler P Chatzinotas A (2005) High diversity of the 'Spumella-like' flagellates: an investigation based on the SSU rRNA gene sequences of isolates from habitats located in six different geographic regions. Environ Microbiol 7 : 685 697.
-
(2005)
Environ Microbiol
, vol.7
, pp. 685-697
-
-
Boenigk, J.1
Pfandl, K.2
Stadler, P.3
Chatzinotas, A.4
-
8
-
-
33846992680
-
Differential thermal adaptation of clonal strains of a protist morphospecies originating from different climatic zones
-
Boenigk J, Jost S, Stoeck T Garstecki T (2007) Differential thermal adaptation of clonal strains of a protist morphospecies originating from different climatic zones. Environ Microbiol 9 : 593 602.
-
(2007)
Environ Microbiol
, vol.9
, pp. 593-602
-
-
Boenigk, J.1
Jost, S.2
Stoeck, T.3
Garstecki, T.4
-
9
-
-
1242299551
-
The growing contributions of molecular biology and immunology to protistan ecology: Molecular signatures as ecological tools
-
Caron DA, Countway P Brown MV (2004) The growing contributions of molecular biology and immunology to protistan ecology: molecular signatures as ecological tools. J Eukaryot Microbiol 51 : 38 48.
-
(2004)
J Eukaryot Microbiol
, vol.51
, pp. 38-48
-
-
Caron, D.A.1
Countway, P.2
Brown, M.V.3
-
10
-
-
70149117756
-
Defining DNA-based operational taxonomic units for microbial-eukaryote ecology
-
Caron DA, Countway PD, Savai P, Gast RJ, Schnetzer A, Moorthi SD, Dennett MR, Moran DM Jones AC (2009) Defining DNA-based operational taxonomic units for microbial-eukaryote ecology. Appl Environ Microb 75 : 5797 5808.
-
(2009)
Appl Environ Microb
, vol.75
, pp. 5797-5808
-
-
Caron, D.A.1
Countway, P.D.2
Savai, P.3
Gast, R.J.4
Schnetzer, A.5
Moorthi, S.D.6
Dennett, M.R.7
Moran, D.M.8
Jones, A.C.9
-
11
-
-
77949288365
-
-
Program SPADE (species prediction and diversity estimates). Available at. accessed December 2006)
-
Chao A Shen TJ (2003-2005) Program SPADE (species prediction and diversity estimates). Available at (accessed December 2006).
-
(2003)
-
-
Chao, A.1
Shen, T.J.2
-
12
-
-
13544268567
-
A new statistical approach for assessing similarity of species composition with incidence and abundance data
-
Chao A, Chazdon RL, Colwell RK Shen TJ (2005) A new statistical approach for assessing similarity of species composition with incidence and abundance data. Ecol Lett 8 : 148 159.
-
(2005)
Ecol Lett
, vol.8
, pp. 148-159
-
-
Chao, A.1
Chazdon, R.L.2
Colwell, R.K.3
Shen, T.J.4
-
13
-
-
33745244776
-
Abundance-based similarity indices and their estimation when there are unseen species in samples
-
Chao A, Chazdon RL, Colwell RK Shen TJ (2006) Abundance-based similarity indices and their estimation when there are unseen species in samples. Biometrics 62 : 361 371.
-
(2006)
Biometrics
, vol.62
, pp. 361-371
-
-
Chao, A.1
Chazdon, R.L.2
Colwell, R.K.3
Shen, T.J.4
-
14
-
-
84944816274
-
Spectrophotometric determination of hydrogen sulfide in natural waters
-
Cline JD (1969) Spectrophotometric determination of hydrogen sulfide in natural waters. Limnol Oceanogr 14 : 454 458.
-
(1969)
Limnol Oceanogr
, vol.14
, pp. 454-458
-
-
Cline, J.D.1
-
15
-
-
0036678438
-
Video plankton recorder reveals high abundances of colonial radiolaria in surface waters of the central North Pacific
-
Dennett MR, Caron DA, Michaels AF, Gallager SM Davis CS (2002) Video plankton recorder reveals high abundances of colonial radiolaria in surface waters of the central North Pacific. J Plankton Res 24 : 797 805.
-
(2002)
J Plankton Res
, vol.24
, pp. 797-805
-
-
Dennett, M.R.1
Caron, D.A.2
Michaels, A.F.3
Gallager, S.M.4
Davis, C.S.5
-
16
-
-
0035403492
-
Application of denaturing gradient gel electrophoresis (DGGE) to study the diversity of marine picoeukaryotic assemblages and comparison of DGGE with other molecular techniques
-
Diez B, Pedrós-Alio C, Marsh TL Massana R (2001) Application of denaturing gradient gel electrophoresis (DGGE) to study the diversity of marine picoeukaryotic assemblages and comparison of DGGE with other molecular techniques. Appl Environ Microb 67 : 2942 2951.
-
(2001)
Appl Environ Microb
, vol.67
, pp. 2942-2951
-
-
Diez, B.1
Pedrós-Alio, C.2
Marsh, T.L.3
Massana, R.4
-
17
-
-
58149197584
-
Protistan community patterns within the brine and halocline of deep hypersaline anoxic basins in the eastern Mediterranean Sea
-
Edgcomb V, Orsi W, Leslin C, Epstein SS, Bunge J, Jeon S, Yakimov MM, Behnke A Stoeck T (2009) Protistan community patterns within the brine and halocline of deep hypersaline anoxic basins in the eastern Mediterranean Sea. Extremophiles 13 : 151 167.
-
(2009)
Extremophiles
, vol.13
, pp. 151-167
-
-
Edgcomb, V.1
Orsi, W.2
Leslin, C.3
Epstein, S.S.4
Bunge, J.5
Jeon, S.6
Yakimov, M.M.7
Behnke, A.8
Stoeck, T.9
-
18
-
-
38649124950
-
'Missing' protists: A molecular perspective
-
Epstein SS López-Garcia P (2008) 'Missing' protists: a molecular perspective. Biodivers Conserv 17 : 261 276.
-
(2008)
Biodivers Conserv
, vol.17
, pp. 261-276
-
-
Epstein, S.S.1
López-Garcia, P.2
-
19
-
-
0025919193
-
Endosymbiont methanogenic bacteria in anaerobic ciliates: Significance for the growth efficiency of the host
-
Fenchel T Finlay BJ (1991) Endosymbiont methanogenic bacteria in anaerobic ciliates: significance for the growth efficiency of the host. J Protozool 38 : 18 22.
-
(1991)
J Protozool
, vol.38
, pp. 18-22
-
-
Fenchel, T.1
Finlay, B.J.2
-
20
-
-
0028816150
-
Microbial diversity and activity in a Danish Fjord with anoxic deep-water
-
Fenchel T, Bernard C, Esteban G, Finlay BJ, Hansen PJ Iversen N (1995) Microbial diversity and activity in a Danish Fjord with anoxic deep-water. Ophelia 43 : 45 100.
-
(1995)
Ophelia
, vol.43
, pp. 45-100
-
-
Fenchel, T.1
Bernard, C.2
Esteban, G.3
Finlay, B.J.4
Hansen, P.J.5
Iversen, N.6
-
21
-
-
84959747425
-
Toward defining the course of evolution: Minimum change for a specific tree topology
-
Fitch WM (1971) Toward defining the course of evolution: minimum change for a specific tree topology. Syst Zool 20 : 406 416.
-
(1971)
Syst Zool
, vol.20
, pp. 406-416
-
-
Fitch, W.M.1
-
22
-
-
0033378897
-
Protist diversity: Estimates of the near-imponderable
-
Foissner W (1999) Protist diversity: estimates of the near-imponderable. Protist 150 : 363 368.
-
(1999)
Protist
, vol.150
, pp. 363-368
-
-
Foissner, W.1
-
23
-
-
10644260347
-
Spatial scaling of microbial eukaryote diversity
-
Green JL, Holmes AJ, Westoby M, Oliver I, Briscoe D, Dangerfield M, Gillings M Beattle A (2004) Spatial scaling of microbial eukaryote diversity. Nature 432 : 747 750.
-
(2004)
Nature
, vol.432
, pp. 747-750
-
-
Green, J.L.1
Holmes, A.J.2
Westoby, M.3
Oliver, I.4
Briscoe, D.5
Dangerfield, M.6
Gillings, M.7
Beattle, A.8
-
24
-
-
0344374434
-
Flagellate predation on a bacterial model community: Interplay of size-selective grazing, specific bacterial cell size, and bacterial community composition
-
Hahn MW Höfle MG (1999) Flagellate predation on a bacterial model community: interplay of size-selective grazing, specific bacterial cell size, and bacterial community composition. Appl Environ Microb 65 : 4863 4872.
-
(1999)
Appl Environ Microb
, vol.65
, pp. 4863-4872
-
-
Hahn, M.W.1
Höfle, M.G.2
-
26
-
-
35148888609
-
Microbial population structures in the deep marine biosphere
-
Huber JA, Mark Welch DB, Morrison HG, Huse SM, Neal PR, Butterfield DA Sogin ML (2007) Microbial population structures in the deep marine biosphere. Science 318 : 97 100.
-
(2007)
Science
, vol.318
, pp. 97-100
-
-
Huber, J.A.1
Mark Welch, D.B.2
Morrison, H.G.3
Huse, S.M.4
Neal, P.R.5
Butterfield, D.A.6
Sogin, M.L.7
-
27
-
-
57149093416
-
Exploring microbial diversity and taxonomy using SSU rRNA hypervariable tag sequencing
-
Huse SM, Dethlefsen L, Huber JA, Welch DM, Relman DA Sogin ML (2008) Exploring microbial diversity and taxonomy using SSU rRNA hypervariable tag sequencing. PLoS Genet 4 : e1000255.
-
(2008)
PLoS Genet
, vol.4
, pp. 1000255
-
-
Huse, S.M.1
Dethlefsen, L.2
Huber, J.A.3
Welch, D.M.4
Relman, D.A.5
Sogin, M.L.6
-
28
-
-
58249111615
-
Environmental rRNA inventories miss over half of protistan diversity
-
Jeon S, Bunge J, Leslin C, Stoeck T, Hong S Epstein SS (2008) Environmental rRNA inventories miss over half of protistan diversity. BMC Microbiol 8 : 222.
-
(2008)
BMC Microbiol
, vol.8
, pp. 222
-
-
Jeon, S.1
Bunge, J.2
Leslin, C.3
Stoeck, T.4
Hong, S.5
Epstein, S.S.6
-
29
-
-
33750071107
-
Synthetic statistical approach reveals a high degree of richness of microbial eukaryotes in an anoxic water column
-
Jeon SO, Bunge J, Stoeck T, Barger KJ, Hong SH Epstein SS (2006) Synthetic statistical approach reveals a high degree of richness of microbial eukaryotes in an anoxic water column. Appl Environ Microb 72 : 6578 6583.
-
(2006)
Appl Environ Microb
, vol.72
, pp. 6578-6583
-
-
Jeon, S.O.1
Bunge, J.2
Stoeck, T.3
Barger, K.J.4
Hong, S.H.5
Epstein, S.S.6
-
30
-
-
0035978456
-
Prey selectivity and the influence of prey carbon: Nitrogen ratio on microflagellate grazing
-
John EH Davidson K (2001) Prey selectivity and the influence of prey carbon: nitrogen ratio on microflagellate grazing. J Exp Mar Biol Ecol 260 : 93 111.
-
(2001)
J Exp Mar Biol Ecol
, vol.260
, pp. 93-111
-
-
John, E.H.1
Davidson, K.2
-
31
-
-
0025682558
-
The phytoplankton spring bloom in the Baltic Sea in 1985, 1986 - Multitude of spatiotemporal scales
-
Kahru M Nommann S (1990) The phytoplankton spring bloom in the Baltic Sea in 1985, 1986 - multitude of spatiotemporal scales. Cont Shelf Res 10 : 329 354.
-
(1990)
Cont Shelf Res
, vol.10
, pp. 329-354
-
-
Kahru, M.1
Nommann, S.2
-
32
-
-
0001032262
-
Spatiotemporal mosaic of the phytoplankton spring bloom in the open Baltic Sea in 1986
-
Kahru M, Leppanen JM, Nommann S, Passow U, Postel L Schulz S (1990) Spatiotemporal mosaic of the phytoplankton spring bloom in the open Baltic Sea in 1986. Mar Ecol-Prog Ser 66 : 301 309.
-
(1990)
Mar Ecol-Prog ser
, vol.66
, pp. 301-309
-
-
Kahru, M.1
Leppanen, J.M.2
Nommann, S.3
Passow, U.4
Postel, L.5
Schulz, S.6
-
34
-
-
0029518662
-
Radiolarian vertical-distribution patterns across the southern California current
-
Kling SA Boltovskoy D (1995) Radiolarian vertical-distribution patterns across the southern California current. Deep-Sea Res Pt I 42 : 191 231.
-
(1995)
Deep-Sea Res Pt i
, vol.42
, pp. 191-231
-
-
Kling, S.A.1
Boltovskoy, D.2
-
35
-
-
63549141532
-
Effects of environmental conditions on the seasonal distribution of phytoplankton biomass in the North Sea
-
Llope M, Chan KS, Ciannelli L, Reid PC, Stige LC Stenseth NC (2009) Effects of environmental conditions on the seasonal distribution of phytoplankton biomass in the North Sea. Limnol Oceanogr 54 : 512 524.
-
(2009)
Limnol Oceanogr
, vol.54
, pp. 512-524
-
-
Llope, M.1
Chan, K.S.2
Ciannelli, L.3
Reid, P.C.4
Stige, L.C.5
Stenseth, N.C.6
-
37
-
-
29144464937
-
UniFrac: A new phylogenetic method for comparing microbial communities
-
Lozupone C Knight R (2005) UniFrac: a new phylogenetic method for comparing microbial communities. Appl Environ Microb 71 : 8228 8235.
-
(2005)
Appl Environ Microb
, vol.71
, pp. 8228-8235
-
-
Lozupone, C.1
Knight, R.2
-
38
-
-
33748713890
-
UniFrac - An online tool for comparing microbial community diversity in a phylogenetic context
-
Lozupone C, Hamady M Knight R (2006) UniFrac - an online tool for comparing microbial community diversity in a phylogenetic context. BMC Bioinformatics 7 : 371.
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 371
-
-
Lozupone, C.1
Hamady, M.2
Knight, R.3
-
39
-
-
2542523843
-
ARB: A software environment for sequence data
-
Ludwig W, Strunk O, Westram R et al 2004) ARB: a software environment for sequence data. Nucleic Acids Res 32 : 1363 1371.
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 1363-1371
-
-
Ludwig, W.1
Strunk, O.2
Westram, R.3
-
40
-
-
0037225001
-
Evaluation of PCR amplification bias by terminal restriction fragment length polymorphism analysis of small-subunit rRNA and mcrA genes by using defined template mixtures of methanogenic pure cultures and soil DNA extracts
-
Lueders T Friedrich MW (2003) Evaluation of PCR amplification bias by terminal restriction fragment length polymorphism analysis of small-subunit rRNA and mcrA genes by using defined template mixtures of methanogenic pure cultures and soil DNA extracts. Appl Environ Microb 69 : 320 326.
-
(2003)
Appl Environ Microb
, vol.69
, pp. 320-326
-
-
Lueders, T.1
Friedrich, M.W.2
-
41
-
-
0035175274
-
The RDP-II (Ribosomal Database Project)
-
Maidak BL, Cole JR, Lilburn TG, Parker CT Jr., Saxman PR, Farris RJ, Garrity GM, Olsen GJ, Schmidt TM Tiedje JM (2001) The RDP-II (Ribosomal Database Project). Nucleic Acids Res 29 : 173 174.
-
(2001)
Nucleic Acids Res
, vol.29
, pp. 173-174
-
-
Maidak, B.L.1
Cole, J.R.2
Lilburn, T.G.3
Parker, Jr.C.T.4
Saxman, P.R.5
Farris, R.J.6
Garrity, G.M.7
Olsen, G.J.8
Schmidt, T.M.9
Tiedje, J.M.10
-
42
-
-
0036324293
-
Phylogenetic approaches for describing and comparing the diversity of microbial communities
-
Martin AP (2002) Phylogenetic approaches for describing and comparing the diversity of microbial communities. Appl Environ Microb 68 : 3673 3682.
-
(2002)
Appl Environ Microb
, vol.68
, pp. 3673-3682
-
-
Martin, A.P.1
-
43
-
-
0035349953
-
DNA extraction from soils: Old bias for new microbial diversity analysis methods
-
Martin-Laurent F, Philippot L, Hallet S, Chaussod R, Germon JC, Soulas G Catroux G (2001) DNA extraction from soils: old bias for new microbial diversity analysis methods. Appl Environ Microb 67 : 2354 2359.
-
(2001)
Appl Environ Microb
, vol.67
, pp. 2354-2359
-
-
Martin-Laurent, F.1
Philippot, L.2
Hallet, S.3
Chaussod, R.4
Germon, J.C.5
Soulas, G.6
Catroux, G.7
-
45
-
-
8144221197
-
Picoeukaryotic diversity in an oligotrophic coastal site studied by molecular and culturing approaches
-
Massana R, Balague V, Guillou L Pedrós-Alio C (2004) Picoeukaryotic diversity in an oligotrophic coastal site studied by molecular and culturing approaches. FEMS Microbiol Ecol 50 : 231 243.
-
(2004)
FEMS Microbiol Ecol
, vol.50
, pp. 231-243
-
-
Massana, R.1
Balague, V.2
Guillou, L.3
Pedrós-Alio, C.4
-
46
-
-
38549141601
-
Genetic diversity of eukaryotic ultraphytoplankton in the Gulf of Naples during an annual cycle
-
McDonald SM, Sarno D, Scanlan DJ Zingone A (2007) Genetic diversity of eukaryotic ultraphytoplankton in the Gulf of Naples during an annual cycle. Aquat Microb Ecol 50 : 75 89.
-
(2007)
Aquat Microb Ecol
, vol.50
, pp. 75-89
-
-
McDonald, S.M.1
Sarno, D.2
Scanlan, D.J.3
Zingone, A.4
-
47
-
-
29444452486
-
Picoeukaryotic plankton diversity at the Helgoland time series site as assessed by three molecular methods
-
Medlin LK, Metfies K, Mehl H, Wiltshire K Valentin K (2006) Picoeukaryotic plankton diversity at the Helgoland time series site as assessed by three molecular methods. Microb Ecol 52 : 53 71.
-
(2006)
Microb Ecol
, vol.52
, pp. 53-71
-
-
Medlin, L.K.1
Metfies, K.2
Mehl, H.3
Wiltshire, K.4
Valentin, K.5
-
48
-
-
0028975824
-
Planktonic sarcodines (Acantharia, Radiolaria, Foraminifera) in surface waters near Bermuda - Abundance, biomass and vertical flux
-
Michaels AF, Caron DA, Swanberg NR, Howse FA Michaels CM (1995) Planktonic sarcodines (Acantharia, Radiolaria, Foraminifera) in surface waters near Bermuda - abundance, biomass and vertical flux. J Plankton Res 17 : 131 163.
-
(1995)
J Plankton Res
, vol.17
, pp. 131-163
-
-
Michaels, A.F.1
Caron, D.A.2
Swanberg, N.R.3
Howse, F.A.4
Michaels, C.M.5
-
49
-
-
0026380163
-
2S in Framvaren Fjord
-
2S in Framvaren Fjord. Limnol Oceanogr 36 : 1007 1014.
-
(1991)
Limnol Oceanogr
, vol.36
, pp. 1007-1014
-
-
Millero, F.J.1
-
50
-
-
0027787578
-
The hydrogenosome
-
Müller M (1993) The hydrogenosome. J Gen Microbiol 139 : 2879 2889.
-
(1993)
J Gen Microbiol
, vol.139
, pp. 2879-2889
-
-
Müller, M.1
-
51
-
-
0031956699
-
Comparison of sequence differences in a variable 23S rRNA domain among sets of cryptic species of ciliated protozoa
-
Nanney DL, Park C, Preparata R Simon EM (1998) Comparison of sequence differences in a variable 23S rRNA domain among sets of cryptic species of ciliated protozoa. J Eukaryot Microbiol 45 : 91 100.
-
(1998)
J Eukaryot Microbiol
, vol.45
, pp. 91-100
-
-
Nanney, D.L.1
Park, C.2
Preparata, R.3
Simon, E.M.4
-
52
-
-
33745119447
-
Microbial community dynamics in a humic lake: Differential persistence of common freshwater phylotypes
-
Newton RJ, Kent AD, Triplett EW McMahon KD (2006) Microbial community dynamics in a humic lake: differential persistence of common freshwater phylotypes. Environ Microbiol 8 : 956 970.
-
(2006)
Environ Microbiol
, vol.8
, pp. 956-970
-
-
Newton, R.J.1
Kent, A.D.2
Triplett, E.W.3
McMahon, K.D.4
-
53
-
-
77949299876
-
-
VENNY. An interactive tool for comparing lists with Venn Diagrams. Available at. accessed December 2007)
-
Oliveros JC (2007) VENNY. An interactive tool for comparing lists with Venn Diagrams. Available at (accessed December 2007).
-
(2007)
-
-
Oliveros, J.C.1
-
54
-
-
33744745905
-
Marine microbial diversity: Can it be determined?
-
Pedrós-Alió C (2006) Marine microbial diversity: can it be determined? Trends Microbiol 14 : 257 263.
-
(2006)
Trends Microbiol
, vol.14
, pp. 257-263
-
-
Pedrós-Alió, C.1
-
55
-
-
33846591068
-
Dipping into the rare biosphere
-
Pedrós-Alió C (2007) Dipping into the rare biosphere. Science 315 : 192 193.
-
(2007)
Science
, vol.315
, pp. 192-193
-
-
Pedrós-Alió, C.1
-
56
-
-
34547784970
-
Seasonal dynamics of phytoplankton in a coastal marine ecosystem: Iskenderun Bay, northeastern Mediterranean Sea
-
Polat S (2007) Seasonal dynamics of phytoplankton in a coastal marine ecosystem: Iskenderun Bay, northeastern Mediterranean Sea. Fresen Environ Bull 16 : 756 763.
-
(2007)
Fresen Environ Bull
, vol.16
, pp. 756-763
-
-
Polat, S.1
-
57
-
-
28944443526
-
Biogeographic analysis of ribosomal RNA clusters from marine bacterioplankton
-
Pommier T, Pinhassi J Hagström A (2005) Biogeographic analysis of ribosomal RNA clusters from marine bacterioplankton. Aquat Microb Ecol 41 : 79 89.
-
(2005)
Aquat Microb Ecol
, vol.41
, pp. 79-89
-
-
Pommier, T.1
Pinhassi, J.2
Hagström, A.3
-
58
-
-
33847327474
-
Biogeography: An emerging cornerstone for understanding prokaryotic diversity, ecology, and evolution
-
Ramette A Tiedje JM (2007) Biogeography: an emerging cornerstone for understanding prokaryotic diversity, ecology, and evolution. Microb Ecol 53 : 197 207.
-
(2007)
Microb Ecol
, vol.53
, pp. 197-207
-
-
Ramette, A.1
Tiedje, J.M.2
-
60
-
-
13844276932
-
Variability in the spatio-temporal distribution and size-structure of phytoplankton across an upwelling area in the NW-Alboran Sea, (W-Mediterranean)
-
Reul A, Rodriguez V, Jimenez-Gomez F, Blanco JM, Bautista B, Sarhan T, Guerrero F, Ruiz J Garcia-Lafuente J (2005) Variability in the spatio-temporal distribution and size-structure of phytoplankton across an upwelling area in the NW-Alboran Sea, (W-Mediterranean). Cont Shelf Res 25 : 589 608.
-
(2005)
Cont Shelf Res
, vol.25
, pp. 589-608
-
-
Reul, A.1
Rodriguez, V.2
Jimenez-Gomez, F.3
Blanco, J.M.4
Bautista, B.5
Sarhan, T.6
Guerrero, F.7
Ruiz, J.8
Garcia-Lafuente, J.9
-
61
-
-
20444481378
-
Molecular screening of free-living microbial eukaryotes: Diversity and distribution using a meta-analysis
-
Richards TA Bass D (2005) Molecular screening of free-living microbial eukaryotes: diversity and distribution using a meta-analysis. Curr Opin Microbiol 8 : 240 252.
-
(2005)
Curr Opin Microbiol
, vol.8
, pp. 240-252
-
-
Richards, T.A.1
Bass, D.2
-
62
-
-
0028915470
-
Evaluation of nearest-neighbor methods for detection of chimeric small-subunit rRNA sequences
-
Robison-Cox JF, Bateson MM Ward DM (1995) Evaluation of nearest-neighbor methods for detection of chimeric small-subunit rRNA sequences. Appl Environ Microb 61 : 1240 1245.
-
(1995)
Appl Environ Microb
, vol.61
, pp. 1240-1245
-
-
Robison-Cox, J.F.1
Bateson, M.M.2
Ward, D.M.3
-
63
-
-
18944386568
-
Ecotype diversity in the marine picoeukaryote Ostreococcus (Chlorophyta, Prasinophyceae)
-
Rodriguez F, Derelle E, Guillou L, Le Gall F, Vaulot D Moreau H (2005) Ecotype diversity in the marine picoeukaryote Ostreococcus (Chlorophyta, Prasinophyceae). Environ Microbiol 7 : 853 859.
-
(2005)
Environ Microbiol
, vol.7
, pp. 853-859
-
-
Rodriguez, F.1
Derelle, E.2
Guillou, L.3
Le Gall, F.4
Vaulot, D.5
Moreau, H.6
-
64
-
-
67649205115
-
Assessing phytoplankton structure and spatio-temporal dynamics in a freshwater ecosystem using a powerful multiway statistical analysis
-
Rolland A, Bertrand F, Maumy M Jacquet S (2009) Assessing phytoplankton structure and spatio-temporal dynamics in a freshwater ecosystem using a powerful multiway statistical analysis. Water Res 43 : 3155 3168.
-
(2009)
Water Res
, vol.43
, pp. 3155-3168
-
-
Rolland, A.1
Bertrand, F.2
Maumy, M.3
Jacquet, S.4
-
65
-
-
2942562373
-
Composition and temporal variability of picoeukaryote communities at a coastal site of the English Channel from 18S rDNA sequences
-
Romari K Vaulot D (2004) Composition and temporal variability of picoeukaryote communities at a coastal site of the English Channel from 18S rDNA sequences. Limnol Oceanogr 49 : 784 798.
-
(2004)
Limnol Oceanogr
, vol.49
, pp. 784-798
-
-
Romari, K.1
Vaulot, D.2
-
66
-
-
68349091275
-
Abundance trends and ecology of planktonic ciliates of the south-western Atlantic (35-63 degrees S): A comparison between neritic and oceanic environments
-
Santoferrara L Alder V (2009) Abundance trends and ecology of planktonic ciliates of the south-western Atlantic (35-63 degrees S): a comparison between neritic and oceanic environments. J Plankton Res 31 : 837 851.
-
(2009)
J Plankton Res
, vol.31
, pp. 837-851
-
-
Santoferrara, L.1
Alder, V.2
-
67
-
-
15444362001
-
Introducing DOTUR, a computer program for defining operational taxonomic units and estimating species richness
-
Schloss PD Handelsman J (2005) Introducing DOTUR, a computer program for defining operational taxonomic units and estimating species richness. Appl Environ Microb 71 : 1501 1506.
-
(2005)
Appl Environ Microb
, vol.71
, pp. 1501-1506
-
-
Schloss, P.D.1
Handelsman, J.2
-
68
-
-
33646116078
-
Introducing TreeClimber, a test to compare microbial community structures
-
Schloss PD Handelsman J (2006) Introducing TreeClimber, a test to compare microbial community structures. Appl Environ Microb 72 : 2379 2384.
-
(2006)
Appl Environ Microb
, vol.72
, pp. 2379-2384
-
-
Schloss, P.D.1
Handelsman, J.2
-
69
-
-
4644275463
-
Integration of microbial ecology and statistics: A test to compare gene libraries
-
Schloss PD, Larget BR Handelsman J (2004) Integration of microbial ecology and statistics: a test to compare gene libraries. Appl Environ Microb 70 : 5485 5482.
-
(2004)
Appl Environ Microb
, vol.70
, pp. 5485-5482
-
-
Schloss, P.D.1
Larget, B.R.2
Handelsman, J.3
-
70
-
-
45549119738
-
Framvaren - Environmental settings
-
Skei JM (1988) Framvaren - environmental settings. Mar Chem 23 : 209 218.
-
(1988)
Mar Chem
, vol.23
, pp. 209-218
-
-
Skei, J.M.1
-
71
-
-
33747073504
-
Microbial diversity in the deep sea and the underexplored 'rare biosphere'
-
Sogin ML, Morrison HG, Huber JA, Welch DM, Huse SM, Neal PR, Arrieta JM Herndl GJ (2006) Microbial diversity in the deep sea and the underexplored 'rare biosphere'. P Natl Acad Sci USA 103 : 12115 12120.
-
(2006)
P Natl Acad Sci USA
, vol.103
, pp. 12115-12120
-
-
Sogin, M.L.1
Morrison, H.G.2
Huber, J.A.3
Welch, D.M.4
Huse, S.M.5
Neal, P.R.6
Arrieta, J.M.7
Herndl, G.J.8
-
72
-
-
0000825481
-
A statistical method for evaluating systematic relationships
-
Sokal RR Michener CD (1958) A statistical method for evaluating systematic relationships. Univ Kansas Scient Bulletin 38 : 1409 1438.
-
(1958)
Univ Kansas Scient Bulletin
, vol.38
, pp. 1409-1438
-
-
Sokal, R.R.1
Michener, C.D.2
-
73
-
-
0000862188
-
The distribution and biomass of phytoplankton and phototrophic bacteria in Framvaren, a permanently anoxic fjord in Norway
-
Sørensen K (1988) The distribution and biomass of phytoplankton and phototrophic bacteria in Framvaren, a permanently anoxic fjord in Norway. Mar Chem 23 : 229 241.
-
(1988)
Mar Chem
, vol.23
, pp. 229-241
-
-
Sørensen, K.1
-
74
-
-
33646228171
-
An endangered oasis of aquatic microbial biodiversity in the Chihuahuan desert
-
Souza V, Espinosa-Asuar L, Escalante AE et al 2006) An endangered oasis of aquatic microbial biodiversity in the Chihuahuan desert. P Natl Acad Sci USA 103 : 6565 6570.
-
(2006)
P Natl Acad Sci USA
, vol.103
, pp. 6565-6570
-
-
Souza, V.1
Espinosa-Asuar, L.2
Escalante, A.E.3
-
75
-
-
0038221066
-
Novel eukaryotic lineages inferred from small-subunit rRNA analyses of oxygen-depleted marine environments
-
Stoeck T Epstein S (2003) Novel eukaryotic lineages inferred from small-subunit rRNA analyses of oxygen-depleted marine environments. Appl Environ Microb 69 : 2657 2663.
-
(2003)
Appl Environ Microb
, vol.69
, pp. 2657-2663
-
-
Stoeck, T.1
Epstein, S.2
-
76
-
-
0141704503
-
Novel eukaryotes from a permanently anoxic Cariaco Basin (Caribbean Sea)
-
Stoeck T, Taylor GT Epstein SS (2003) Novel eukaryotes from a permanently anoxic Cariaco Basin (Caribbean Sea). Appl Environ Microb 69 : 5656 5663.
-
(2003)
Appl Environ Microb
, vol.69
, pp. 5656-5663
-
-
Stoeck, T.1
Taylor, G.T.2
Epstein, S.S.3
-
77
-
-
32344437178
-
A multiple PCR-primer approach to access the microeukaryotic diversity in environmental samples
-
Stoeck T, Hayward GT, Taylor RV Epstein S (2006) A multiple PCR-primer approach to access the microeukaryotic diversity in environmental samples. Protist 157 : 31 43.
-
(2006)
Protist
, vol.157
, pp. 31-43
-
-
Stoeck, T.1
Hayward, G.T.2
Taylor, R.V.3
Epstein, S.4
-
78
-
-
38649123647
-
Protistan diversity in the arctic: A case of paleoclimate shaping modern biodiversity?
-
Stoeck T, Kasper J, Bunge J, Leslin C, Ilyin V Epstein S (2007) Protistan diversity in the arctic: a case of paleoclimate shaping modern biodiversity? PLoS One 2 : e728.
-
(2007)
PLoS One
, vol.2
, pp. 728
-
-
Stoeck, T.1
Kasper, J.2
Bunge, J.3
Leslin, C.4
Ilyin, V.5
Epstein, S.6
-
79
-
-
44449108331
-
Multigene phylogenies of clonal Spumella-like strains, a cryptic heterotrophic nanoflagellate, isolated from different geographical regions
-
Stoeck T, Jost S Boenigk J (2008) Multigene phylogenies of clonal Spumella-like strains, a cryptic heterotrophic nanoflagellate, isolated from different geographical regions. Int J Syst Evol Micr 58 : 716 724.
-
(2008)
Int J Syst Evol Micr
, vol.58
, pp. 716-724
-
-
Stoeck, T.1
Jost, S.2
Boenigk, J.3
-
80
-
-
70749095743
-
Massively parallel tag sequencing reveals the complexity of anaerobic marine protistan communities
-
Stoeck T, Behnke A, Christen R, Amaral-Zettler L, Rodriguez-Mora M, Chistoserdov A, Orsi W Edgcomb V (2009) Massively parallel tag sequencing reveals the complexity of anaerobic marine protistan communities. BMC Biol 7 : 72.
-
(2009)
BMC Biol
, vol.7
, pp. 72
-
-
Stoeck, T.1
Behnke, A.2
Christen, R.3
Amaral-Zettler, L.4
Rodriguez-Mora, M.5
Chistoserdov, A.6
Orsi, W.7
Edgcomb, V.8
-
82
-
-
0036273581
-
Full-depth profile (0-2000 m) of bacteria, heterotrophic nanoflagellates and ciliates in the NW Mediterranean Sea: Vertical partitioning of microbial trophic structures
-
Tanaka T Rassoulzadegan F (2002) Full-depth profile (0-2000 m) of bacteria, heterotrophic nanoflagellates and ciliates in the NW Mediterranean Sea: vertical partitioning of microbial trophic structures. Deep Sea Res Pt II 49 : 2093 2107.
-
(2002)
Deep Sea Res Pt II
, vol.49
, pp. 2093-2107
-
-
Tanaka, T.1
Rassoulzadegan, F.2
-
83
-
-
61949237542
-
Rapid shifts in dominant taxa among microbial eukaryotes in estuarine ecosystems
-
Vigil P, Countway PD, Rose J, Lonsdale DJ, Gobler CJ Caron DA (2009) Rapid shifts in dominant taxa among microbial eukaryotes in estuarine ecosystems. Aquat Microb Ecol 54 : 83 100.
-
(2009)
Aquat Microb Ecol
, vol.54
, pp. 83-100
-
-
Vigil, P.1
Countway, P.D.2
Rose, J.3
Lonsdale, D.J.4
Gobler, C.J.5
Caron, D.A.6
-
84
-
-
12244257532
-
Geographic and environmental sources of variation in lake bacterial community composition
-
Yannarell AC Triplett EW (2005) Geographic and environmental sources of variation in lake bacterial community composition. Appl Environ Microb 71 : 227 239.
-
(2005)
Appl Environ Microb
, vol.71
, pp. 227-239
-
-
Yannarell, A.C.1
Triplett, E.W.2
-
85
-
-
0347949986
-
Temporal patterns in bacterial communities in three temperate lakes of different trophic status
-
Yannarell AC, Kent AD, Lauster GH, Kratz TK Triplett EW (2003) Temporal patterns in bacterial communities in three temperate lakes of different trophic status. Microb Ecol 46 : 391 405.
-
(2003)
Microb Ecol
, vol.46
, pp. 391-405
-
-
Yannarell, A.C.1
Kent, A.D.2
Lauster, G.H.3
Kratz, T.K.4
Triplett, E.W.5
-
86
-
-
13844317082
-
Mapping of picoeucaryotes in marine ecosystems with quantitative PCR of the 18S rRNA gene
-
Zhu F, Massana R, Not F, Marie D Vaulot D (2005) Mapping of picoeucaryotes in marine ecosystems with quantitative PCR of the 18S rRNA gene. FEMS Microbiol Ecol 52 : 79 92.
-
(2005)
FEMS Microbiol Ecol
, vol.52
, pp. 79-92
-
-
Zhu, F.1
Massana, R.2
Not, F.3
Marie, D.4
Vaulot, D.5
-
87
-
-
33750966726
-
Diversity estimates of microeukaryotes below the chemocline of the anoxic Mariager Fjord, Denmark
-
Zuendorf A, Bunge J, Behnke A, Barger KJ Stoeck T (2006) Diversity estimates of microeukaryotes below the chemocline of the anoxic Mariager Fjord, Denmark. FEMS Microbiol Ecol 58 : 476 491.
-
(2006)
FEMS Microbiol Ecol
, vol.58
, pp. 476-491
-
-
Zuendorf, A.1
Bunge, J.2
Behnke, A.3
Barger, K.J.4
Stoeck, T.5
|