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Volumn 41, Issue 1, 2005, Pages 79-89

Biogeographic analysis of ribosomal RNA clusters from marine bacterioplankton

Author keywords

Bacterioplankton; Cosmopolitanism; Global distribution; Ribotypes

Indexed keywords

BACTERIA (MICROORGANISMS);

EID: 28944443526     PISSN: 09483055     EISSN: None     Source Type: Journal    
DOI: 10.3354/ame041079     Document Type: Article
Times cited : (73)

References (52)
  • 1
    • 11144275310 scopus 로고    scopus 로고
    • Ecological and biogeographic relationships of class Flavobacteria in the Southern Ocean
    • Abell GCJ, Bowman JP (2005) Ecological and biogeographic relationships of class Flavobacteria in the Southern Ocean. FEMS Microbiol Ecol 51:265-277
    • (2005) FEMS Microbiol Ecol , vol.51 , pp. 265-277
    • Abell, G.C.J.1    Bowman, J.P.2
  • 2
    • 0032974993 scopus 로고    scopus 로고
    • Diversity of free-living and attached bacteria in offshore Western Mediterranean waters as depicted by analysis of genes encoding 16S rRNA
    • Acinas SG, Anton J, Rodriguez-Valera F (1999) Diversity of free-living and attached bacteria in offshore Western Mediterranean waters as depicted by analysis of genes encoding 16S rRNA. Appl Environ Microbiol 65:514-522
    • (1999) Appl Environ Microbiol , vol.65 , pp. 514-522
    • Acinas, S.G.1    Anton, J.2    Rodriguez-Valera, F.3
  • 5
    • 0032076192 scopus 로고    scopus 로고
    • Microbial control of oceanic carbon flux: The plot thickens
    • Azam F (1998) Microbial control of oceanic carbon flux: the plot thickens. Science 280:694-696
    • (1998) Science , vol.280 , pp. 694-696
    • Azam, F.1
  • 7
    • 0034554741 scopus 로고    scopus 로고
    • Construction and analysis of bacterial artificial chromosome libraries from a marine microbial assemblage
    • Beja O, Suzuki MT, Koonin EV, Aravind L and 8 others (2000) Construction and analysis of bacterial artificial chromosome libraries from a marine microbial assemblage. Environ Microbiol 2:516-529
    • (2000) Environ Microbiol , vol.2 , pp. 516-529
    • Beja, O.1    Suzuki, M.T.2    Koonin, E.V.3    Aravind, L.4
  • 8
    • 0036135990 scopus 로고    scopus 로고
    • Comparative genomic analysis of archaeal genotypic variants in a single population and in two different oceanic provinces
    • Beja O, Koonin EV, Aravind L, Taylor LT and 6 others (2002) Comparative genomic analysis of archaeal genotypic variants in a single population and in two different oceanic provinces. Appl Environ Microbiol 68:335-345
    • (2002) Appl Environ Microbiol , vol.68 , pp. 335-345
    • Beja, O.1    Koonin, E.V.2    Aravind, L.3    Taylor, L.T.4
  • 9
    • 0014935408 scopus 로고
    • Mechanism for the water-to-air transfer and concentration of bacteria
    • Blanchard DC, Syzdek L (1970) Mechanism for the water-to-air transfer and concentration of bacteria. Science 170:626-628
    • (1970) Science , vol.170 , pp. 626-628
    • Blanchard, D.C.1    Syzdek, L.2
  • 11
    • 0003006242 scopus 로고
    • The oceanic cyanobacterial picoplankton
    • Bryant DA (ed). Kluwer Academic Publishers, Dordrecht
    • Carr NG, Mann NH (1994) The oceanic cyanobacterial picoplankton. In: Bryant DA (ed) The molecular biology of Cyanobacteria. Kluwer Academic Publishers, Dordrecht, p 27-48
    • (1994) The Molecular Biology of Cyanobacteria , pp. 27-48
    • Carr, N.G.1    Mann, N.H.2
  • 12
    • 0034467820 scopus 로고    scopus 로고
    • Biogeography and degree of endemicity of fluorescent Pseudomonas strains in soil
    • Cho JC, Tiedje JM (2000) Biogeography and degree of endemicity of fluorescent Pseudomonas strains in soil. Appl Environ Microbiol 66:5448-5456
    • (2000) Appl Environ Microbiol , vol.66 , pp. 5448-5456
    • Cho, J.C.1    Tiedje, J.M.2
  • 13
    • 0036407157 scopus 로고    scopus 로고
    • What are bacterial species?
    • Cohan FM (2002) What are bacterial species? Annu Rev Microbiol 56:457-487
    • (2002) Annu Rev Microbiol , vol.56 , pp. 457-487
    • Cohan, F.M.1
  • 14
    • 0034764343 scopus 로고    scopus 로고
    • Biogeography and speciation in the Pandonna volvulina (Chlorophyta) superclade
    • Coleman AW (2001) Biogeography and speciation in the Pandonna volvulina (Chlorophyta) superclade. J Phycol 37:836-851
    • (2001) J Phycol , vol.37 , pp. 836-851
    • Coleman, A.W.1
  • 15
    • 0034469143 scopus 로고    scopus 로고
    • Community composition of marine bacterioplankton determined by 16S rRNA gene clone libraries and fluorescence in situ hybridization
    • Cottrell MT, Kirchman DL (2000) Community composition of marine bacterioplankton determined by 16S rRNA gene clone libraries and fluorescence in situ hybridization. Appl Environ Microbiol 66:5116-5122
    • (2000) Appl Environ Microbiol , vol.66 , pp. 5116-5122
    • Cottrell, M.T.1    Kirchman, D.L.2
  • 16
    • 0034604156 scopus 로고    scopus 로고
    • Molecular evidence for genetic mixing of Arctic and Antarctic subpolar populations of planktonic foraminifers
    • Darling KF, Wade CM, Stewart IA, Kroon D, Dingle R, Brown AJ (2000) Molecular evidence for genetic mixing of Arctic and Antarctic subpolar populations of planktonic foraminifers. Nature 405:43-47
    • (2000) Nature , vol.405 , pp. 43-47
    • Darling, K.F.1    Wade, C.M.2    Stewart, I.A.3    Kroon, D.4    Dingle, R.5    Brown, A.J.6
  • 17
    • 0026755238 scopus 로고
    • Archaea in coastal marine environments
    • USA
    • DeLong EF (1992) Archaea in coastal marine environments. Proc Natl Acad Sci USA 89:5685-5689
    • (1992) Proc Natl Acad Sci , vol.89 , pp. 5685-5689
    • Delong, E.F.1
  • 18
    • 0002335569 scopus 로고    scopus 로고
    • Bacterial production and biomass in the oceans
    • Kirchman DL (ed). Wiley-Liss, New York
    • Ducklow HW (2000) Bacterial production and biomass in the oceans. In: Kirchman DL (ed) Microbial ecology of the oceans. Wiley-Liss, New York, p 85-120
    • (2000) Microbial Ecology of the Oceans , pp. 85-120
    • Ducklow, H.W.1
  • 19
    • 4043087606 scopus 로고    scopus 로고
    • The ubiquity of small species: Patterns of local and global diversity
    • Fenchel T, Finlay BJ (2004) The ubiquity of small species: patterns of local and global diversity. Bioscience 54:777-784
    • (2004) Bioscience , vol.54 , pp. 777-784
    • Fenchel, T.1    Finlay, B.J.2
  • 21
    • 0031940875 scopus 로고    scopus 로고
    • The global diversity of protozoa and other small species
    • Finlay BJ (1998) The global diversity of protozoa and other small species. Int J Parasitol 28:29-48
    • (1998) Int J Parasitol , vol.28 , pp. 29-48
    • Finlay, B.J.1
  • 22
    • 0037052531 scopus 로고    scopus 로고
    • Global dispersal of free-living microbial eukaryote species
    • Finlay BJ (2002) Global dispersal of free-living microbial eukaryote species. Science 296:1061-1063
    • (2002) Science , vol.296 , pp. 1061-1063
    • Finlay, B.J.1
  • 23
    • 0033378898 scopus 로고    scopus 로고
    • Apparent global ubiquity of species in the protist genus Paraphysomonas
    • Finlay BJ, Clarke KJ (1999) Apparent global ubiquity of species in the protist genus Paraphysomonas. Protist 150:419-430
    • (1999) Protist , vol.150 , pp. 419-430
    • Finlay, B.J.1    Clarke, K.J.2
  • 24
    • 0027336561 scopus 로고
    • Phylogenetic diversity of subsurface marine microbial communities from the Atlantic and Pacific Oceans
    • Fuhrman JA, McCallum K, Davis AA (1993) Phylogenetic diversity of subsurface marine microbial communities from the Atlantic and Pacific Oceans. Appl Environ Microbiol 59:1294-1302
    • (1993) Appl Environ Microbiol , vol.59 , pp. 1294-1302
    • Fuhrman, J.A.1    McCallum, K.2    Davis, A.A.3
  • 25
    • 0033929777 scopus 로고    scopus 로고
    • Microdiversity of uncultured marine prokaryotes: The SAR11 cluster and the marine Archaea of Group I
    • García-Martínez J, Rodríguez-Valera F (2000) Microdiversity of uncultured marine prokaryotes: the SAR11 cluster and the marine Archaea of Group I. Mol Ecol 9:935-948
    • (2000) Mol Ecol , vol.9 , pp. 935-948
    • García-Martínez, J.1    Rodríguez-Valera, F.2
  • 26
    • 0000262823 scopus 로고    scopus 로고
    • Evolution, diversity and molecular ecology of marine prokaryotes
    • Kirchman DL (ed). Wiley-Liss, New York
    • Giovannoni SJ, Rappé MS (2000) Evolution, diversity and molecular ecology of marine prokaryotes. In: Kirchman DL (ed) Microbial ecology of the oceans. Wiley-Liss, New York, p 47-84
    • (2000) Microbial Ecology of the Oceans , pp. 47-84
    • Giovannoni, S.J.1    Rappé, M.S.2
  • 27
    • 0034852647 scopus 로고    scopus 로고
    • Phylogenetic relationship among various strains of Dunaliella (chlorophyceae) based on nuclear ITS rDNA sequences
    • Gonzalez MA, Coleman AW, Gomez PI, Montoya R (2001) Phylogenetic relationship among various strains of Dunaliella (chlorophyceae) based on nuclear ITS rDNA sequences. J Phycol 37:604-611
    • (2001) J Phycol , vol.37 , pp. 604-611
    • Gonzalez, M.A.1    Coleman, A.W.2    Gomez, P.I.3    Montoya, R.4
  • 28
    • 0034791133 scopus 로고    scopus 로고
    • African desert dust in the Carribean atmosphere: Microbiology and public health
    • Griffin DW, Garrison VH, Herman JR, Shinn EA (2001) African desert dust in the Carribean atmosphere: microbiology and public health. Aerobiologia 17:203-213
    • (2001) Aerobiologia , vol.17 , pp. 203-213
    • Griffin, D.W.1    Garrison, V.H.2    Herman, J.R.3    Shinn, E.A.4
  • 29
    • 0034658817 scopus 로고    scopus 로고
    • Biogeographical diversity among marine bacterioplankton
    • Hagström Å, Pinhassi J, Zweifel UL (2000) Biogeographical diversity among marine bacterioplankton. Aquat Microb Ecol 21:231-244
    • (2000) Aquat Microb Ecol , vol.21 , pp. 231-244
    • Hagström, Å.1    Pinhassi, J.2    Zweifel, U.L.3
  • 31
    • 0036198672 scopus 로고    scopus 로고
    • Widespread distribution in Polar oceans of a 16S rRNA gene sequence with affinity to Nitrospira-like ammonia-oxidizing bacteria
    • Hollibaugh JT, Bano N, Ducklow HW (2002) Widespread distribution in Polar oceans of a 16S rRNA gene sequence with affinity to Nitrospira-like ammonia-oxidizing bacteria. Appl Environ Microbiol 68:1478-1484
    • (2002) Appl Environ Microbiol , vol.68 , pp. 1478-1484
    • Hollibaugh, J.T.1    Bano, N.2    Ducklow, H.W.3
  • 32
    • 0242709343 scopus 로고    scopus 로고
    • Multispecies microbial mutualisms on coral reefs: The host as a habitat
    • Knowlton N, Rohwer F (2003) Multispecies microbial mutualisms on coral reefs: the host as a habitat. Am Nat 162:S51-S62
    • (2003) Am Nat , vol.162
    • Knowlton, N.1    Rohwer, F.2
  • 33
    • 0035515271 scopus 로고    scopus 로고
    • Antagonistic interactions among marine pelagic bacteria
    • Long RA, Azam F (2001) Antagonistic interactions among marine pelagic bacteria. Appl Environ Microbiol 67: 4975-4983
    • (2001) Appl Environ Microbiol , vol.67 , pp. 4975-4983
    • Long, R.A.1    Azam, F.2
  • 34
    • 0034114417 scopus 로고    scopus 로고
    • A few cosmopolitan phylotypes dominate planktonic archaeal assemblages in widely different oceanic provinces
    • Massana R, DeLong EF, Pedros-Alio C (2000) A few cosmopolitan phylotypes dominate planktonic archaeal assemblages in widely different oceanic provinces. Appl Environ Microbiol 66:1777-1787
    • (2000) Appl Environ Microbiol , vol.66 , pp. 1777-1787
    • Massana, R.1    Delong, E.F.2    Pedros-Alio, C.3
  • 36
    • 0028976712 scopus 로고
    • Genetic comparisons reveal the same unknown bacterial lineages in Atlantic and Pacific bacterioplankton communities
    • Mullins TD, Britschgi TB, Krest RL, Giovannoni SJ (1995) Genetic comparisons reveal the same unknown bacterial lineages in Atlantic and Pacific bacterioplankton communities. Limnol Oceanogr 40:148-158
    • (1995) Limnol Oceanogr , vol.40 , pp. 148-158
    • Mullins, T.D.1    Britschgi, T.B.2    Krest, R.L.3    Giovannoni, S.J.4
  • 37
    • 1542301476 scopus 로고    scopus 로고
    • Distribution and culturability of the uncultivated 'AGG58 cluster' of the Bacteroidetes phylum in aquatic environments
    • O'Sullivan LA, Fuller KE, Thomas EM, Turley CM, Fry JC, Weightman AJ (2004) Distribution and culturability of the uncultivated 'AGG58 cluster' of the Bacteroidetes phylum in aquatic environments. FEMS Microbiol Ecol 47:359-370
    • (2004) FEMS Microbiol Ecol , vol.47 , pp. 359-370
    • O'Sullivan, L.A.1    Fuller, K.E.2    Thomas, E.M.3    Turley, C.M.4    Fry, J.C.5    Weightman, A.J.6
  • 39
    • 0033009854 scopus 로고    scopus 로고
    • Prochlorococcus, a marine photosynthetic prokaryote of global significance
    • Partensky F, Hess WR, Vaulot D (1999) Prochlorococcus, a marine photosynthetic prokaryote of global significance. Microbiol Mol Biol Rev 63:106-127
    • (1999) Microbiol Mol Biol Rev , vol.63 , pp. 106-127
    • Partensky, F.1    Hess, W.R.2    Vaulot, D.3
  • 40
    • 0042878464 scopus 로고    scopus 로고
    • Genome divergence in two Prochlorococcus ecotypes reflects oceanic niche differentiation
    • Rocap G, Larimer FW, Lamerdin J, Malfatti S and 20 others (2003) Genome divergence in two Prochlorococcus ecotypes reflects oceanic niche differentiation. Nature 424:1042-1047
    • (2003) Nature , vol.424 , pp. 1042-1047
    • Rocap, G.1    Larimer, F.W.2    Lamerdin, J.3    Malfatti, S.4
  • 41
    • 0842285837 scopus 로고    scopus 로고
    • A newly discovered Roseobacter cluster in temperate and polar oceans
    • Selje N, Simon M, Brinkhoff T (2004) A newly discovered Roseobacter cluster in temperate and polar oceans. Nature 427:445-448
    • (2004) Nature , vol.427 , pp. 445-448
    • Selje, N.1    Simon, M.2    Brinkhoff, T.3
  • 42
    • 0018426987 scopus 로고
    • A strategy of DNA sequencing employing computer programs
    • Staden R (1979) A strategy of DNA sequencing employing computer programs. Nucleic Acids Res 6:2601-2610
    • (1979) Nucleic Acids Res , vol.6 , pp. 2601-2610
    • Staden, R.1
  • 43
    • 0032697215 scopus 로고    scopus 로고
    • Poles apart: Biodiversity and biogeography of sea ice bacteria
    • Staley JT, Gosink JJ (1999) Poles apart: biodiversity and biogeography of sea ice bacteria. Annu Rev Microbiol 53:189-215
    • (1999) Annu Rev Microbiol , vol.53 , pp. 189-215
    • Staley, J.T.1    Gosink, J.J.2
  • 44
    • 0035208354 scopus 로고    scopus 로고
    • Phylogenetic analysis of ribosomal RNA operons from uncultivated coastal marine bacterioplankton
    • Suzuki MT, Beja O, Taylor LT, DeLong EF (2001) Phylogenetic analysis of ribosomal RNA operons from uncultivated coastal marine bacterioplankton. Environ Microbiol 3:323-331
    • (2001) Environ Microbiol , vol.3 , pp. 323-331
    • Suzuki, M.T.1    Beja, O.2    Taylor, L.T.3    DeLong, E.F.4
  • 46
    • 14544287770 scopus 로고    scopus 로고
    • Genotypic diversity within a natural coastal bacterioplankton population
    • Thompson JR, Pacocha S, Pharino C, Klepac-Ceraj V and 5 others (2005) Genotypic diversity within a natural coastal bacterioplankton population. Science 307:1311-1313
    • (2005) Science , vol.307 , pp. 1311-1313
    • Thompson, J.R.1    Pacocha, S.2    Pharino, C.3    Klepac-Ceraj, V.4
  • 48
    • 11144354360 scopus 로고    scopus 로고
    • Environmental genome shotgun sequencing of the Sargasso Sea
    • Venter JC, Remington K, Heidelberg JF, Halpern AL and 19 others (2004) Environmental genome shotgun sequencing of the Sargasso Sea. Science 304:66-74
    • (2004) Science , vol.304 , pp. 66-74
    • Venter, J.C.1    Remington, K.2    Heidelberg, J.F.3    Halpern, A.L.4
  • 49
    • 0036323050 scopus 로고    scopus 로고
    • Worldwide distribution of Nitrosococcus oceani, a marine ammonia-oxidizing gamma-proteobacterium, detected by PCR and sequencing of 16S rRNA and amoA genes
    • Ward BB, O'Mullan GD (2002) Worldwide distribution of Nitrosococcus oceani, a marine ammonia-oxidizing gamma-proteobacterium, detected by PCR and sequencing of 16S rRNA and amoA genes. Appl Environ Microbiol 68:4153-4157
    • (2002) Appl Environ Microbiol , vol.68 , pp. 4153-4157
    • Ward, B.B.1    O'Mullan, G.D.2
  • 50
    • 0000408853 scopus 로고
    • Widespread occurrence of a unicellular, marine, planktonic, cyanobacterium
    • Waterbury JB, Watson SW, Guillard RRL, Brand LE (1979) Widespread occurrence of a unicellular, marine, planktonic, cyanobacterium. Nature 277:293-294
    • (1979) Nature , vol.277 , pp. 293-294
    • Waterbury, J.B.1    Watson, S.W.2    Guillard, R.R.L.3    Brand, L.E.4
  • 51
    • 0034916894 scopus 로고    scopus 로고
    • Closely related Prochlorococcus genotypes show remarkably different depth distributions in two oceanic regions as revealed by in situ hybridization using 16S rRNA-targeted oligonucleotides
    • West NJ, Schonhuber WA, Fuller NJ, Amann RI, Rippka R, Post AF, Scanlan DJ (2001) Closely related Prochlorococcus genotypes show remarkably different depth distributions in two oceanic regions as revealed by in situ hybridization using 16S rRNA-targeted oligonucleotides. Microbiology 147:1731-1744
    • (2001) Microbiology , vol.147 , pp. 1731-1744
    • West, N.J.1    Schonhuber, W.A.2    Fuller, N.J.3    Amann, R.I.4    Rippka, R.5    Post, A.F.6    Scanlan, D.J.7
  • 52
    • 0042242559 scopus 로고    scopus 로고
    • Geographic barriers isolate endemic populations of hyperthermophilic archaea
    • Whitaker RJ, Grogan DW, Taylor JW (2003) Geographic barriers isolate endemic populations of hyperthermophilic archaea. Science 301:976-978
    • (2003) Science , vol.301 , pp. 976-978
    • Whitaker, R.J.1    Grogan, D.W.2    Taylor, J.W.3


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