-
1
-
-
57049122976
-
Modes and cuts in metabolic networks: complexity and algorithms
-
Acuña V., Chierichetti F., Lacroix V., Marchetti-Spaccamela A., Sagot M.-F., Stougie L. Modes and cuts in metabolic networks: complexity and algorithms. BioSystems 2009, 95:51-60.
-
(2009)
BioSystems
, vol.95
, pp. 51-60
-
-
Acuña, V.1
Chierichetti, F.2
Lacroix, V.3
Marchetti-Spaccamela, A.4
Sagot, M.-F.5
Stougie, L.6
-
2
-
-
34347258175
-
Quantitative prediction of cellular metabolism with constraint-based models: the COBRA toolbox
-
Becker S., Feist A., Mo M., Hannum G., Palsson B., Herrgard M. Quantitative prediction of cellular metabolism with constraint-based models: the COBRA toolbox. Nat. Protoc. 2007, 2:727-738.
-
(2007)
Nat. Protoc.
, vol.2
, pp. 727-738
-
-
Becker, S.1
Feist, A.2
Mo, M.3
Hannum, G.4
Palsson, B.5
Herrgard, M.6
-
3
-
-
0020799155
-
The complexity of vertex enumeration methods
-
Dyer M. The complexity of vertex enumeration methods. Math. Oper. Res. 1983, 8(3):381-402.
-
(1983)
Math. Oper. Res.
, vol.8
, Issue.3
, pp. 381-402
-
-
Dyer, M.1
-
4
-
-
0003187763
-
An algorithm for determining all extreme points of a convex polytope
-
Dyer M., Proll L. An algorithm for determining all extreme points of a convex polytope. Mathematical Programming 1977, 12:81-96.
-
(1977)
Mathematical Programming
, vol.12
, pp. 81-96
-
-
Dyer, M.1
Proll, L.2
-
6
-
-
40349114631
-
Generating all vertices of a polyhedron is hard
-
Khachiyan L., Boros E., Borys K., Elbassioni K., Gurvich V. Generating all vertices of a polyhedron is hard. Discr. Comput. Geom. 2008, 39:174-190.
-
(2008)
Discr. Comput. Geom.
, vol.39
, pp. 174-190
-
-
Khachiyan, L.1
Boros, E.2
Borys, K.3
Elbassioni, K.4
Gurvich, V.5
-
7
-
-
50949094727
-
A new constraint-based description of the steady-state flux cone of metabolic networks
-
Larhlimi A., Bockmayr A. A new constraint-based description of the steady-state flux cone of metabolic networks. Discr. Appl. Math. 2009, 157(10):2257-2266.
-
(2009)
Discr. Appl. Math.
, vol.157
, Issue.10
, pp. 2257-2266
-
-
Larhlimi, A.1
Bockmayr, A.2
-
8
-
-
0002043078
-
The double description method
-
Princeton University Press, H. Kuhn, A. Tucker (Eds.)
-
Motzkin T., Raiffa H., Thompson G., Thrall R. The double description method. Contributions to the Theory of Games, vol. II 1953, 51-73. Princeton University Press. H. Kuhn, A. Tucker (Eds.).
-
(1953)
Contributions to the Theory of Games, vol. II
, pp. 51-73
-
-
Motzkin, T.1
Raiffa, H.2
Thompson, G.3
Thrall, R.4
-
9
-
-
0032485833
-
Metabolic engineering: techniques for analysis of targets for genetic manipulations
-
Nielsen J. Metabolic engineering: techniques for analysis of targets for genetic manipulations. Biotechnol. Bioeng. 1998, 58:125-132.
-
(1998)
Biotechnol. Bioeng.
, vol.58
, pp. 125-132
-
-
Nielsen, J.1
-
10
-
-
0036284760
-
An expanded role for microbial physiology in metabolic engineering and functional genomics: moving towards systems biology
-
Nielsen J., Olsson L. An expanded role for microbial physiology in metabolic engineering and functional genomics: moving towards systems biology. FEMS Yeast Res. 2002, 2:175-181.
-
(2002)
FEMS Yeast Res.
, vol.2
, pp. 175-181
-
-
Nielsen, J.1
Olsson, L.2
-
11
-
-
8744224466
-
Optstrain: a computational framework for redesign of microbial production systems
-
Pharkya P., Burgard A., Maranas C. Optstrain: a computational framework for redesign of microbial production systems. Genome Res. 2004, 14:2367-2376.
-
(2004)
Genome Res.
, vol.14
, pp. 2367-2376
-
-
Pharkya, P.1
Burgard, A.2
Maranas, C.3
-
12
-
-
9544253891
-
Genome-scale models of microbial cells: evaluating the consequences of constraints
-
Price N., Reed J., Palsson B. Genome-scale models of microbial cells: evaluating the consequences of constraints. Nat. Rev. Microbiol. 2004, 2:886-897.
-
(2004)
Nat. Rev. Microbiol.
, vol.2
, pp. 886-897
-
-
Price, N.1
Reed, J.2
Palsson, B.3
-
13
-
-
40549127097
-
Design and application of genome-scale reconstructed metabolic models
-
Rocha I., Frster J., Nielsen J. Design and application of genome-scale reconstructed metabolic models. Methods Mol. Biol. 2008, 416:409-431.
-
(2008)
Methods Mol. Biol.
, vol.416
, pp. 409-431
-
-
Rocha, I.1
Frster, J.2
Nielsen, J.3
-
15
-
-
0000029295
-
On elementary flux modes in biochemical reaction systems at steady state
-
Schuster S., Hilgetag C. On elementary flux modes in biochemical reaction systems at steady state. J. Biol. Syst. 1994, 2(2):165-182.
-
(1994)
J. Biol. Syst.
, vol.2
, Issue.2
, pp. 165-182
-
-
Schuster, S.1
Hilgetag, C.2
-
16
-
-
33746083686
-
Quantitative elementary mode analysis of metabolic pathways: the example of yeast glycolysis
-
Schwartz J., Kanehisa M. Quantitative elementary mode analysis of metabolic pathways: the example of yeast glycolysis. BMC Bioinform. 2006, 7:186.
-
(2006)
BMC Bioinform.
, vol.7
, pp. 186
-
-
Schwartz, J.1
Kanehisa, M.2
-
17
-
-
51849142353
-
Genome-scale model for Clostridium acetobutylicum: Part I. Metabolic network resolution and analysis
-
Senger R., Papoutsakis E. Genome-scale model for Clostridium acetobutylicum: Part I. Metabolic network resolution and analysis. Biotechnol. Bioeng. 2008, 101:1036-1052.
-
(2008)
Biotechnol. Bioeng.
, vol.101
, pp. 1036-1052
-
-
Senger, R.1
Papoutsakis, E.2
-
18
-
-
51849157931
-
Genome-scale model for Clostridium acetobutylicum: Part II. Development of specific proton flux states and numerically determined sub-systems
-
Senger R., Papoutsakis E. Genome-scale model for Clostridium acetobutylicum: Part II. Development of specific proton flux states and numerically determined sub-systems. Biotechnol. Bioeng. 2008, 101:1053-1071.
-
(2008)
Biotechnol. Bioeng.
, vol.101
, pp. 1053-1071
-
-
Senger, R.1
Papoutsakis, E.2
-
19
-
-
0037079050
-
Metabolic network structure determines key aspects of functionality and regulation
-
Stelling J., Klamt S., Bettenbrock K., Schuster S., Gilles E. Metabolic network structure determines key aspects of functionality and regulation. Nature 2002, 420:190-193.
-
(2002)
Nature
, vol.420
, pp. 190-193
-
-
Stelling, J.1
Klamt, S.2
Bettenbrock, K.3
Schuster, S.4
Gilles, E.5
-
20
-
-
77649274228
-
Large Scale Methods to Enumerate Extreme Rays and Elementary Modes
-
Terzer, M., 2009. Large Scale Methods to Enumerate Extreme Rays and Elementary Modes. PhD-Thesis, ETH Zürich.
-
(2009)
PhD-Thesis, ETH Zürich.
-
-
Terzer, M.1
-
21
-
-
52949098408
-
Large-scale computation of elementary flux modes with bit pattern trees
-
Terzer M., Stelling J. Large-scale computation of elementary flux modes with bit pattern trees. Bioinformatics 2008, 24(19):2229-2235.
-
(2008)
Bioinformatics
, vol.24
, Issue.19
, pp. 2229-2235
-
-
Terzer, M.1
Stelling, J.2
-
22
-
-
31344432121
-
Modelling strategies for the industrial exploitation of lactic acid bacteria
-
Teusink B., Smid E. Modelling strategies for the industrial exploitation of lactic acid bacteria. Nat. Rev. Microbiol. 2006, 4:46-56.
-
(2006)
Nat. Rev. Microbiol.
, vol.4
, pp. 46-56
-
-
Teusink, B.1
Smid, E.2
-
23
-
-
16344382935
-
An improved algorithm for stoichiometric network analysis: theory and applications
-
Urbanczik R., Wagner C. An improved algorithm for stoichiometric network analysis: theory and applications. Bioinformatics 2005, 21:1203-1210.
-
(2005)
Bioinformatics
, vol.21
, pp. 1203-1210
-
-
Urbanczik, R.1
Wagner, C.2
-
24
-
-
11344277349
-
Towards replacing closed with open target selection strategies
-
van der Werf M. Towards replacing closed with open target selection strategies. Trends Biotechnol. 2005, 23:11-16.
-
(2005)
Trends Biotechnol.
, vol.23
, pp. 11-16
-
-
van der Werf, M.1
|