메뉴 건너뛰기




Volumn 41, Issue 1, 2010, Pages 5-16

Stationary and structural control in gene regulatory networks: Basic concepts

Author keywords

Control; Gene regulatory network; Genomic signal processing; Markov chains; Perturbation theory

Indexed keywords

BASIC CONCEPTS; EXTERNAL CONTROL; GENE NETWORKS; GENE REGULATIONS; GENE REGULATORY NETWORKS; GENOMIC-SIGNAL-PROCESSING; MARKOV CHAIN; NETWORK DYNAMICS; NETWORK STRUCTURES; PERTURBATION THEORY; PROBABILISTIC BOOLEAN NETWORKS; STRUCTURAL CONTROL; THERAPEUTIC INTERVENTION; TIME CHANGE; UNDESIRABLE STATE;

EID: 77649266823     PISSN: 00207721     EISSN: 14645319     Source Type: Journal    
DOI: 10.1080/00207720903144560     Document Type: Article
Times cited : (30)

References (44)
  • 1
    • 33846424927 scopus 로고    scopus 로고
    • Control of boolean networks: Hardness results and algorithms for tree structured networks
    • Akutsu, T., Hayashida, M., Ching, W.K., and Ng, M.K. (2007), 'Control of Boolean Networks: Hardness Results and Algorithms for Tree Structured Networks', Theoretical Biology, 244(4), 670-679.
    • (2007) Theoretical Biology , vol.244 , Issue.4 , pp. 670-679
    • Akutsu, T.1    Hayashida, M.2    Ching, W.K.3    Ng, M.K.4
  • 4
    • 24344481300 scopus 로고    scopus 로고
    • Steady-state probabilities for attractors in probabilistic boolean networks
    • Brun, M., Dougherty, E.R., and Shmulevich, I. (2005), 'Steady-state Probabilities for Attractors in Probabilistic Boolean Networks', EURASIP Journal on Signal Processing, 85(10), 1993-2013.
    • (2005) EURASIP Journal on Signal Processing , vol.85 , Issue.10 , pp. 1993-2013
    • Brun, M.1    Dougherty, E.R.2    Shmulevich, I.3
  • 5
    • 62649169298 scopus 로고    scopus 로고
    • Optimal control policy for probabilistic boolean networks with hard constraints
    • Ching, W.-K., Zhang, S.-Q., Jiao, Y., Akutsu, T., Tsing, N.-K., and Wong, A.S. (2009), 'Optimal Control Policy for Probabilistic Boolean Networks with Hard Constraints', IET Systems Biology, 3(2), 90-99.
    • (2009) IET Systems Biology , vol.3 , Issue.2 , pp. 90-99
    • Ching, W.-K.1    Zhang, S.-Q.2    Jiao, Y.3    Akutsu, T.4    Tsing, N.-K.5    Wong, A.S.6
  • 6
    • 0035885345 scopus 로고    scopus 로고
    • Comparison of perturbation bounds for the stationary distribution of markov chains
    • Cho, G.E., and Meyer, C.D. (2001), 'Comparison of Perturbation Bounds for the Stationary Distribution of Markov chains', Linear Algebra and its Applications, 335, 137-150.
    • (2001) Linear Algebra and Its Applications , vol.335 , pp. 137-150
    • Cho, G.E.1    Meyer, C.D.2
  • 9
    • 2342444140 scopus 로고    scopus 로고
    • External control in markovian genetic regulatory networks: The imperfect information vase
    • Datta, A., Choudhary, A., Bittner, M.L., and Dougherty, E.R. (2004), 'External Control in Markovian Genetic Regulatory Networks: The Imperfect Information Vase', Bioinformatics, 20(6), 924-930.
    • (2004) Bioinformatics , vol.20 , Issue.6 , pp. 924-930
    • Datta, A.1    Choudhary, A.2    Bittner, M.L.3    Dougherty, E.R.4
  • 10
    • 65949120704 scopus 로고    scopus 로고
    • Translational science: Epistemology and the investigative process
    • Dougherty, E.R. (2009), 'Translational Science: Epistemology and the Investigative Process', Current Genomics, 10(2), 102-109.
    • (2009) Current Genomics , vol.10 , Issue.2 , pp. 102-109
    • Dougherty, E.R.1
  • 11
    • 85032751366 scopus 로고    scopus 로고
    • Genomic signal processing: Diagnosis and therapy
    • DOI 10.1109/MSP.2005.1407722
    • Dougherty, E.R., and Datta, A. (2005), 'Genomic Signal Processing: Diagnosis and Therapy', IEEE Signal Processing Magazine, 22(1), 107-112. (Pubitemid 40319553)
    • (2005) IEEE Signal Processing Magazine , vol.22 , Issue.1 , pp. 107-112
    • Dougherty, E.R.1    Datta, A.2
  • 12
    • 38949144494 scopus 로고    scopus 로고
    • On approximate stochastic control in genetic regulatory networks
    • Faryabi, B., Datta, A., and Dougherty, E.R. (2007), 'On Approximate Stochastic Control in Genetic Regulatory Networks', IET Systems Biology, 1(6), 361-368.
    • (2007) IET Systems Biology , vol.1 , Issue.6 , pp. 361-368
    • Faryabi, B.1    Datta, A.2    Dougherty, E.R.3
  • 17
    • 0037893169 scopus 로고
    • Stationary distributions of perturbed markov chains
    • Hunter, J.J. (1986), 'Stationary Distributions of Perturbed Markov Chains', Linear Algebra and its Applications, 82, 201-214.
    • (1986) Linear Algebra and Its Applications , vol.82 , pp. 201-214
    • Hunter, J.J.1
  • 18
    • 27344445788 scopus 로고    scopus 로고
    • Stationary distributions and mean first passage times of perturbed markov chains
    • Hunter, J.J. (2005), 'Stationary Distributions and Mean First Passage Times of Perturbed Markov Chains', Linear Algebra and its Applications, 410, 217-243.
    • (2005) Linear Algebra and Its Applications , vol.410 , pp. 217-243
    • Hunter, J.J.1
  • 20
    • 34247875949 scopus 로고    scopus 로고
    • Dynamics preserving size reduction mappings for probabilistic boolean networks
    • Ivanov, I., Pal, R., and Dougherty, E.R. (2007), 'Dynamics Preserving Size Reduction Mappings for Probabilistic Boolean Networks', IEEE Transactions on Signal Processing, 55(5), 2310-2322.
    • (2007) IEEE Transactions on Signal Processing , vol.55 , Issue.5 , pp. 2310-2322
    • Ivanov, I.1    Pal, R.2    Dougherty, E.R.3
  • 21
    • 0014489272 scopus 로고
    • Metabolic stability and epigenesis in randomly constructed genetic nets
    • Kauffman, S.A. (1969), 'Metabolic Stability and Epigenesis in Randomly Constructed Genetic Nets', Theoretical Biology, 22, 437-467.
    • (1969) Theoretical Biology , vol.22 , pp. 437-467
    • Kauffman, S.A.1
  • 26
    • 16344368806 scopus 로고    scopus 로고
    • Intervention in context-sensitive probabilistic Boolean networks
    • DOI 10.1093/bioinformatics/bti131
    • Pal, R., Datta, A., Bittner, M.L., and Dougherty, E.R. (2005), 'Intervention in Context-sensitive Probabilistic Boolean Networks', Bioinformatics, 21, 1211-1218. (Pubitemid 40467947)
    • (2005) Bioinformatics , vol.21 , Issue.7 , pp. 1211-1218
    • Pal, R.1    Datta, A.2    Bittner, M.L.3    Dougherty, E.R.4
  • 27
    • 27744569877 scopus 로고    scopus 로고
    • Generating boolean networks with a prescribed attractor structure
    • Pal, R., Ivanov, I., Datta, A., Bittner, M.L., and Dougherty, E.R. (2005), 'Generating Boolean Networks with a Prescribed Attractor Structure', Bioinformatics, 21, 4021-4025.
    • (2005) Bioinformatics , vol.21 , pp. 4021-4025
    • Pal, R.1    Ivanov, I.2    Datta, A.3    Bittner, M.L.4    Dougherty, E.R.5
  • 28
    • 33744466566 scopus 로고    scopus 로고
    • Optimal infinite-horizon control for probabilistic Boolean networks
    • DOI 10.1109/TSP.2006.873740
    • Pal, R., Datta, A., and Dougherty, E.R. (2006), 'Optimal Infinite horizon Control for Probabilistic Boolean Networks', IEEE Transactions and Signal Processing, 54(6-2), 2375-2387. (Pubitemid 43805580)
    • (2006) IEEE Transactions on Signal Processing , vol.54 , Issue.6 , pp. 2375-2387
    • Pal, R.1    Datta, A.2    Dougherty, E.R.3
  • 31
    • 53149114883 scopus 로고    scopus 로고
    • Effect of function perturbation on the steady-state distribution of genetic regulatory networks: Optimal structural intervention
    • Qian, X., and Dougherty, E.R. (2008), 'Effect of Function Perturbation on the Steady-state Distribution of Genetic regulatory Networks: Optimal Structural Intervention', IEEE Transactions and Signal Processing, 56(10-1), 4966-4975.
    • (2008) IEEE Transactions and Signal Processing , vol.56 , Issue.1-10 , pp. 4966-4975
    • Qian, X.1    Dougherty, E.R.2
  • 32
    • 62549129440 scopus 로고    scopus 로고
    • On the long-run sensitivity of probabilistic boolean networks
    • Qian, X., and Dougherty, E.R. (2009), 'On the Long-run Sensitivity of Probabilistic Boolean Networks', Journal of Theoretical Biology, 257(4), 560-577.
    • (2009) Journal of Theoretical Biology , vol.257 , Issue.4 , pp. 560-577
    • Qian, X.1    Dougherty, E.R.2
  • 34
    • 0001296683 scopus 로고
    • Perturbation theory and finite markov chains
    • Schweitzer, P.J. (1968), 'Perturbation Theory and Finite Markov Chains', Journal of Applied Probability, 5, 401-413.
    • (1968) Journal of Applied Probability , vol.5 , pp. 401-413
    • Schweitzer, P.J.1
  • 36
    • 0036184629 scopus 로고    scopus 로고
    • Probabilistic booleannetworks: A rule-based uncertainty model for gene regulatory networks
    • Shmulevich, I., Dougherty, E.R., Kim, S., and Zhang, W. (2002), 'Probabilistic Booleannetworks: A Rule-based Uncertainty Model for Gene Regulatory Networks', Bioinformatics, 18, 261-274.
    • (2002) Bioinformatics , vol.18 , pp. 261-274
    • Shmulevich, I.1    Dougherty, E.R.2    Kim, S.3    Zhang, W.4
  • 37
    • 0345983657 scopus 로고    scopus 로고
    • From boolean to probabilistic boolean networks as models of genetic regulatory networks
    • DOI 10.1109/JPROC.2002.804686
    • Shmulevich, I., Dougherty, E.R., and Zhang, W. (2002a), 'From Boolean to Probabilistic Boolean Networks as Models of Genetic Regulatory Networks', Proceedings of the IEEE, 90, 1778-1792. (Pubitemid 43758724)
    • (2002) Proceedings of the IEEE , vol.90 , Issue.11 , pp. 1778-1792
    • Shmulevich, I.1    Dougherty, E.R.2    Zhang, W.3
  • 38
    • 0036772705 scopus 로고    scopus 로고
    • Gene perturbation and intervention in probabilistic boolean networks
    • Shmulevich, I., Dougherty, E.R., and Zhang, W. (2002b), 'Gene Perturbation and Intervention in Probabilistic Boolean Networks', Bioinformatics, 18, 1319-1331.
    • (2002) Bioinformatics , vol.18 , pp. 1319-1331
    • Shmulevich, I.1    Dougherty, E.R.2    Zhang, W.3
  • 39
    • 0347164904 scopus 로고    scopus 로고
    • Control of stationary behaviour in probabilistic boolean networks by means of structural intervention
    • Shmulevich, I., Dougherty, E.R., and Zhang, W. (2002c), 'Control of Stationary Behaviour in Probabilistic Boolean Networks by Means of Structural Intervention', Biological Systems, 10(4), 431-446.
    • (2002) Biological Systems , vol.10 , Issue.4 , pp. 431-446
    • Shmulevich, I.1    Dougherty, E.R.2    Zhang, W.3
  • 43
    • 34447342269 scopus 로고    scopus 로고
    • The impact of function perturbations in boolean networks
    • Xiao, Y., and Dougherty, E.R. (2007), 'The impact of Function Perturbations in Boolean Networks', Bioinformatics, 23(10), 1265-1273.
    • (2007) Bioinformatics , vol.23 , Issue.10 , pp. 1265-1273
    • Xiao, Y.1    Dougherty, E.R.2
  • 44
    • 10244239406 scopus 로고    scopus 로고
    • A bayesian connectivitybased approach to constructing probabilistic gene regulatory networks
    • Zhou, X., Wang, X., Pal, R., Ivanov, I., Bittner, M.L., and Dougherty, E.R. (2004), 'A Bayesian Connectivitybased Approach to Constructing Probabilistic Gene Regulatory Networks', Bioinformatics, 20, 2918-2927.
    • (2004) Bioinformatics , vol.20 , pp. 2918-2927
    • Zhou, X.1    Wang, X.2    Pal, R.3    Ivanov, I.4    Bittner, M.L.5    Dougherty, E.R.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.