Intervention in context-sensitive probabilistic boolean networks revisited

Eurasip Journal on Bioinformatics and Systems Biology

Volumn 2009, Issue , 2009, Pages

  Faryabi, Babak ^a   Vahedi, Golnaz ^a   Chamberland, Jean Francois ^a   Datta, Aniruddha ^a   Dougherty, Edward R ^a,b  

^a Texas AandM University   (United States)

^b TRANSLATIONAL GENOMICS RESEARCH INSTITUTE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 65649119667     PISSN: 16874145     EISSN: 16874153     Source Type: Journal    
DOI: 10.1155/2009/360864     Document Type: Article

References (20)

1. Miyashita T., Reed J. C., Tumor suppressor p53 is a direct transcriptional activator of the human bax gene Cell 1995 80 2 293 299
2. Owen-Schaub L. B., Zhang W., Cusack J. C., Wild-type human p53 and a temperature-sensitive mutant induce Fas/APO-1 expression Molecular and Cellular Biology 1995 15 6 3032 3040
3. El-Deiry W. S., Tokino T., Velculescu V. E., WAF1, a potential mediator of p53 tumor suppression Cell 1993 75 4 817 825
4. Swisher S. G., Roth J. A., Nemunaitis J., Adenovirus-mediated p53 gene transfer in advanced non-small-cell lung cancer Journal of the National Cancer Institute 1999 91 9 763 771
5. Bouvet M., Bold R. J., Lee J., Adenovirus-mediated wild-type p53 tumor suppressor gene therapy induces apoptosis and suppresses growth of human pancreatic cancer Annals of Surgical Oncology 1998 5 8 681 688
6. Shmulevich I., Dougherty E. R., Genomic Signal Processing 2007 Princeton, NJ, USA Princeton University Press
7. Kauffman S. A., Metabolic stability and epigenesis in randomly constructed genetic nets Journal of Theoretical Biology 1969 22 3 437 467
8. Kauffman S. A., The Origins of Order: Self-Organization and Selection in Evolution 1993 New York, NY, USA Oxford University Press
9. Kauffman S., Levin S., Towards a general theory of adaptive walks on rugged landscapes Journal of Theoretical Biology 1987 128 1 11 45
10. Shmulevich I., Dougherty E. R., Kim S., Zhang W., Probabilistic Boolean networks: a rule-based uncertainty model for gene regulatory networks Bioinformatics 2002 18 2 261 274
11. Shmulevich I., Dougherty E. R., Zhang W., From Boolean to probabilistic Boolean networks as models of genetic regulatory networks Proceedings of the IEEE 2002 90 11 1778 1792
12. Brun M., Dougherty E. R., Shmulevich I., Steady-state probabilities for attractors in probabilistic Boolean networks Signal Processing 2005 85 10 1993 2013
13. Pal R., Datta A., Bittner M. L., Dougherty E. R., Intervention in context-sensitive probabilistic Boolean networks Bioinformatics 2005 21 7 1211 1218
14. Pal R., Datta A., Dougherty E. R., Optimal infinite-horizon control for probabilistic Boolean networks IEEE Transactions on Signal Processing 2006 54 6, part 2 2375 2387
15. Faryabi B., Datta A., Dougherty E. R., On approximate stochastic control in genetic regulatory networks IET Systems Biology 2007 1 6 361 368
16. Kim S., Li H., Dougherty E. R., Can Markov chain models mimic biological regulation? Journal of Biological Systems 2002 10 4 337 357
17. Bertsekas D. P., Dynamic Programming and Optimal Control 2007 Belmont, Mass, USA Athena Scientific
18. Norris J. R., Markov Chains 1997 Cambridge, UK Cambridge University Press
19. Bittner M., Meltzer P., Chen Y., Molecular classification of cutaneous malignant melanoma by gene expression profiling Nature 2000 406 6795 536 540
20. Pal R., Ivanov I., Datta A., Bittner M. L., Dougherty E. R., Generating Boolean networks with a prescribed attractor structure Bioinformatics 2005 21 21 4021 4025