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Volumn 2, Issue 3, 2008, Pages 412-423

Optimal intervention in asynchronous genetic regulatory networks

Author keywords

Asynchronous genetic regulatory networks; Optimal stochastic control; Semi Markov decision processes; Translational genomics

Indexed keywords

BOOLEAN ALGEBRA; BOOLEAN FUNCTIONS; MARKOV PROCESSES; OPTIMAL CONTROL SYSTEMS; PROBABILITY; STANDARDS; STATE SPACE METHODS;

EID: 47049117618     PISSN: 19324553     EISSN: None     Source Type: Journal    
DOI: 10.1109/JSTSP.2008.923853     Document Type: Article
Times cited : (39)

References (24)
  • 3
    • 0036184629 scopus 로고    scopus 로고
    • Probabilistic Boolean networks: A rule-based uncertainty model for gene regulatory networks
    • I. Shmulevich, E. R. Dougherty, S. Kim, and W. Zhang, "Probabilistic Boolean networks: A rule-based uncertainty model for gene regulatory networks," Bioinformatics, vol. 18, no. 2, pp. 261-274, 2002.
    • (2002) Bioinformatics , vol.18 , Issue.2 , pp. 261-274
    • Shmulevich, I.1    Dougherty, E.R.2    Kim, S.3    Zhang, W.4
  • 4
    • 0036772705 scopus 로고    scopus 로고
    • Gene perturbation and intervention in probabilistic Boolean networks
    • I. Shmulevich, E. R. Dougherty, and W. Zhang, "Gene perturbation and intervention in probabilistic Boolean networks," Bioinformatics, vol. 18, no. 10, pp. 1319-1331, 2002.
    • (2002) Bioinformatics , vol.18 , Issue.10 , pp. 1319-1331
    • Shmulevich, I.1    Dougherty, E.R.2    Zhang, W.3
  • 5
    • 0038724486 scopus 로고    scopus 로고
    • External control in markovian genetic regulatory networks
    • A. Datta, A. Choudhary, M. L. Bittner, and E. R. Dougherty, "External control in markovian genetic regulatory networks," Mach. Learn., vol. 52, no. 1/2, pp. 169-191, 2003.
    • (2003) Mach. Learn , vol.52 , Issue.1-2 , pp. 169-191
    • Datta, A.1    Choudhary, A.2    Bittner, M.L.3    Dougherty, E.R.4
  • 6
    • 33744466566 scopus 로고    scopus 로고
    • Optimal infinite-horizon control for probabilistic Boolean networks
    • Jun
    • R. Pal, A. Datta, and E. R. Dougherty, "Optimal infinite-horizon control for probabilistic Boolean networks," IEEE Trans. Signal Process., vol. 54, no. 6, pp. 2375-2387, Jun. 2006.
    • (2006) IEEE Trans. Signal Process , vol.54 , Issue.6 , pp. 2375-2387
    • Pal, R.1    Datta, A.2    Dougherty, E.R.3
  • 7
    • 0032809387 scopus 로고    scopus 로고
    • Gene expression profiling, genetic networks, and cellular states: An integrating concept for tumorigenesis and drug discovery
    • S. Huang, "Gene expression profiling, genetic networks, and cellular states: An integrating concept for tumorigenesis and drug discovery," J. Mol. Med., vol. 77, no. 6, pp. 469-480, 1999.
    • (1999) J. Mol. Med , vol.77 , Issue.6 , pp. 469-480
    • Huang, S.1
  • 9
    • 0005126318 scopus 로고    scopus 로고
    • Time out of joint: Attractors in asynchronous random Boolean networks
    • Jul
    • I. Harvey and T. Bossomaier, "Time out of joint: Attractors in asynchronous random Boolean networks," in Proc. 4th Eur. Conf. Artificial Life, Jul. 1997, pp. 67-75.
    • (1997) Proc. 4th Eur. Conf. Artificial Life , pp. 67-75
    • Harvey, I.1    Bossomaier, T.2
  • 10
    • 33846847652 scopus 로고    scopus 로고
    • Dynamics of asynchronous random Boolean networks with asynchrony generated by stochastic processes
    • X. Deng, H. Geng, and M. T. Matache, "Dynamics of asynchronous random Boolean networks with asynchrony generated by stochastic processes," BioSystems, vol. 88, no. 1-2, pp. 16-34, 2007.
    • (2007) BioSystems , vol.88 , Issue.1-2 , pp. 16-34
    • Deng, X.1    Geng, H.2    Matache, M.T.3
  • 11
    • 27144548324 scopus 로고    scopus 로고
    • F. Greil and B. Drossel, The dynamics of critical Kauffman networks under asynchronous stochastic update, Phys. Rev. Lett., 95, no. 4(048701), 2005.
    • F. Greil and B. Drossel, "The dynamics of critical Kauffman networks under asynchronous stochastic update," Phys. Rev. Lett., vol. 95, no. 4(048701), 2005.
  • 13
    • 0035047751 scopus 로고    scopus 로고
    • Rhythmic and non-rhythmic attractors in asynchronous random Boolean networks
    • E. A. Di Paolo, "Rhythmic and non-rhythmic attractors in asynchronous random Boolean networks," BioSystems, vol. 59, no. 3, pp. 185-195, 2001.
    • (2001) BioSystems , vol.59 , Issue.3 , pp. 185-195
    • Di Paolo, E.A.1
  • 16
    • 33746618913 scopus 로고    scopus 로고
    • Methods of robustness analysis for Boolean models of gene control networks
    • M. Chaves, E. D. Sontag, and R. Albert, "Methods of robustness analysis for Boolean models of gene control networks," IEE Proc. Systems Biology, vol. 235, pp. 154-167, 2006.
    • (2006) IEE Proc. Systems Biology , vol.235 , pp. 154-167
    • Chaves, M.1    Sontag, E.D.2    Albert, R.3
  • 17
    • 33747874092 scopus 로고    scopus 로고
    • Dynamical analysis of a generic Boolean model for the control of the mammalian cell cycle
    • A. Faure, A. Naldi, C. Chaouiya, and D. Theiffry, "Dynamical analysis of a generic Boolean model for the control of the mammalian cell cycle," Bioinformatics, vol. 22, no. 14, pp. e124-e131, 2006.
    • (2006) Bioinformatics , vol.22 , Issue.14
    • Faure, A.1    Naldi, A.2    Chaouiya, C.3    Theiffry, D.4
  • 18
    • 7444241318 scopus 로고    scopus 로고
    • Critical values in asynchronous random Boolean networks
    • Sep, MIT Press
    • B. Mesot and C. Teuscher, "Critical values in asynchronous random Boolean networks," in Proc. 7th Eur. Conf. Artificial Life (ECAL03) Sep. 2003, pp. 367-377, MIT Press.
    • (2003) Proc. 7th Eur. Conf. Artificial Life (ECAL03) , pp. 367-377
    • Mesot, B.1    Teuscher, C.2
  • 19
    • 18844380444 scopus 로고    scopus 로고
    • Robustness and fragility of Boolean models for genetic regulatory networks
    • M. Chaves, R. Albert, and E. D. Sontag, "Robustness and fragility of Boolean models for genetic regulatory networks," J. Theoret. Biol. vol. 235, pp. 431-449, 2005.
    • (2005) J. Theoret. Biol , vol.235 , pp. 431-449
    • Chaves, M.1    Albert, R.2    Sontag, E.D.3
  • 21
    • 24344481300 scopus 로고    scopus 로고
    • Steady-state probabilities for attractors in probabilistic Boolean networks
    • M. Brun, E. R. Dougherty, and I. Shmulevich, "Steady-state probabilities for attractors in probabilistic Boolean networks," Signal Process., vol. 85, no. 10, pp. 1993-2013, 2005.
    • (2005) Signal Process , vol.85 , Issue.10 , pp. 1993-2013
    • Brun, M.1    Dougherty, E.R.2    Shmulevich, I.3
  • 22
    • 0003781238 scopus 로고    scopus 로고
    • Cambridge, U.K, Cambridge Univ. Press
    • J. R. Norris, Markov Chains. Cambridge, U.K.: Cambridge Univ. Press, 1998.
    • (1998) Markov Chains
    • Norris, J.R.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.