High resolution melting analysis for gene scanning

Methods

Volumn 50, Issue 4, 2010, Pages 250-261

  Erali, Maria ^a   Wittwer, Carl T ^a,b  

^a ARUP INSTITUTE FOR CLINICAL AND EXPERIMENTAL PATHOLOGY   (United States)

^b UNIVERSITY OF UTAH SCHOOL OF MEDICINE   (United States)

Author keywords

Genotyping; Heteroduplex scanning; High resolution melting; LCGreen Plus; LightScanner

Indexed keywords

DNA; DYE; PRIMER DNA;

ARTICLE; CAPILLARY ELECTROPHORESIS; CHRONIC GRANULOMATOUS DISEASE; COMPUTER MODEL; DNA DETERMINATION; EXON; FEMALE; GEL ELECTROPHORESIS; GENE MUTATION; GENETIC ANALYSIS; GENOTYPE; HETEROZYGOSITY; HOMOZYGOSITY; HUMAN; MELTING POINT; NORMAL HUMAN; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; ROBOTICS; SEPARATION TECHNIQUE; WILD TYPE;

BASE SEQUENCE; DNA; DNA PRIMERS; FLUORESCENT DYES; FREEZING; GENOTYPE; GRANULOMATOUS DISEASE, CHRONIC; HETEROZYGOTE; HOMOZYGOTE; HOT TEMPERATURE; HUMANS; MEMBRANE GLYCOPROTEINS; NADPH OXIDASE; NUCLEIC ACID DENATURATION; POLYMERASE CHAIN REACTION;

EID: 77649232843     PISSN: 10462023     EISSN: 10959130     Source Type: Journal    
DOI: 10.1016/j.ymeth.2010.01.013     Document Type: Article

References (44)

1. Santalucia Jr. J., and Hicks D. Annu. Rev. Biophys. Biomol. Struct. 33 (2004) 415-440
2. Lerman L.S., and Silverstein K. In: Wu R. (Ed). Methods in Enzymology vol. 155 (1987), Academic Press, New York 482-501
3. Steger G. Nucleic Acids Res. 22 (1994) 2760-2768
4. Lyon E., and Wittwer C.T. J. Mol. Diagn. 11 (2009) 93-101
5. Lay M.J., and Wittwer C.T. Clin. Chem. 43 (1997) 2262-2267
6. Ririe K.M., Rasmussen R.P., and Wittwer C.T. Anal. Biochem. 245 (1997) 154-160
7. Pornprasert S., Phusua A., Suanta S., Saetung R., and Sanguansermsri T. Eur. J. Haematol. 80 (2008) 510-514
8. Price E.P., Smith H., Huygens F., and Giffard P.M. Appl. Environ. Microbiol. 73 (2007) 3431-3436
9. Worm J., Aggerholm A., and Guldberg P. Clin. Chem. 47 (2001) 1183-1189
10. Dujols V.E., Kusukawa N., Mckinney J.T., Dobrowolski S.F., and Wittwer C.T. In: Dorak M.T. (Ed). Real-Time PCR (2006), Garland Science, New York 157-171
11. Farrar J.S., Reed G.H., and Wittwer C.T. In: Patrinos G.P., and Ansorge W.J. (Eds). Molecular Diagnostics (2010), Elsevier, London 229-245
12. Herrmann M.G., Durtschi J.D., Bromley L.K., Wittwer C.T., and Voelkerding K.V. Clin. Chem. 52 (2006) 494-503
13. Herrmann M.G., Durtschi J.D., Bromley L.K., Wittwer C.T., and Voelkerding K.V. Clin. Chem. 53 (2007) 150-152
14. Herrmann M.G., Durtschi J.D., Wittwer C.T., and Voelkerding K.V. Clin. Chem. 53 (2007) 1544-1548
15. Palais R., and Wittwer C.T. In: Johnson M.L., and Brand L. (Eds). Methods in Enzymology vol. 454 (2009), Academic Press, New York 323-343
16. Liew M., Pryor R., Palais R., Meadows C., Erali M., Lyon E., and Wittwer C. Clin. Chem. 50 (2004) 1156-1164
17. Reed G.H., and Wittwer C.T. Clin. Chem. 50 (2004) 1748-1754
18. Gundry C.N., Dobrowolski S.F., Martin Y.R., Robbins T.C., Nay L.M., Boyd N., Coyne T., Wall M.D., Wittwer C.T., and Teng D.H. Nucleic Acids Res. 36 (2008) 3401-3408
19. C. Rigon, A. Andrisani, M. Forzan, D. D'antona, A. Bruson, E. Cosmi, G. Ambrosini, G.M. Tiboni, M. Clementi, Fertil. Steril (2009) in press, doi:10.1016/j.fertnstert.2009.05.025.
20. Montgomery J., Wittwer C.T., Kent J.O., and Zhou L. Clin. Chem. 53 (2007) 1891-1898
21. Palais R.A., Liew M.A., and Wittwer C.T. Anal. Biochem. 346 (2005) 167-175
22. Erali M., Palais R., and Wittwer C.T. In: Seitz O., and Marx A. (Eds). Molecular Beacons: Signalling Nucleic Acid Probes, Methods and Protocols vol. 429 (2008), Humana Press, Totowa 199-206
23. Zhou L., Myers A.N., Vandersteen J.G., Wang L., and Wittwer C.T. Clin. Chem. 50 (2004) 1328-1335
24. Zhou L., Errigo R.J., Lu H., Poritz M.A., Seipp M.T., and Wittwer C.T. Clin. Chem. 54 (2008) 1648-1656
25. Vossen R.H., Aten E., Roos A., and Den Dunnen J.T. Hum. Mutat. 30 (2009) 860-866
26. Montgomery J., Wittwer C.T., Palais R.A., and Zhou L. Nat. Prot. 2 (2007) 59-66
27. Seipp M.T., Durtschi J.D., Voelkerding K.V., and Wittwer C.T. J. Biomol. Technol. 20 (2009) 160-164
28. Seipp M.T., Pattison D., Durtschi J.D., Jama M., Voelkerding K.V., and Wittwer C.T. Clin. Chem. 54 (2008) 108-115
29. J. Aguirre-Lamban, R. Riveiro-Alvarez, M. Garcia-Hoyos, D. Cantalapiedra, A. Avila-Fernandez, C. Villaverde, M.J. Trujillo-Tiebas, C. Ramos, C. Ayuso, Invest. Ophthalmol. Vis. Sci. (2009) in press, doi:10.1167/iovs.09-4518.
30. Chou L.S., Gedge F., and Lyon E. J. Mol. Diagn. 7 (2005) 111-120
31. J.L. Montgomery, L.N. Sanford, C.T. Wittwer, Expert. Rev. Mol. Diagn. 10 (2010) in press.
32. Erali M., Voelkerding K.V., and Wittwer C.T. Exp. Mol. Pathol. 85 (2008) 50-58
33. J.F. Mackay, C.T. Wittwer, in: PCR Optimization and Troubleshooting, Horizon Scientific Press, Norwich, 2010, in press.
34. J.T. Mckinney, L.M. Nay, D. De Koeyer, G.H. Reed, M. Wall, R.A. Palais, R.L. Jarret, C.T. Wittwer, in: K. Meksem, G. Kahl (Eds.), The Handbook of Plant Mutation Screening., Wiley-VCH, Weinheim, 2010, in press.
35. Reed G.H., Kent J.O., and Wittwer C.T. Pharmacogenomics 8 (2007) 597-608
36. Wittwer C.T. Hum. Mutat. 30 (2009) 857-859
37. Zhang M.Q. Hum. Mol. Genet. 7 (1998) 919-932
38. Poland D. Biopolymers 13 (1974) 1859-1871
39. Fixman M., and Freire J.J. Biopolymers 16 (1977) 2693-2704
40. Blake R.D., and Delcourt S.G. Nucleic Acids Res. 26 (1998) 3323-3332
41. Laurie A.D., Smith M.P., and George P.M. Clin. Chem. 53 (2007) 2211-2214
42. Vandersteen J.G., Bayrak-Toydemir P., Palais R.A., and Wittwer C.T. Clin. Chem. 53 (2007) 1191-1198
43. Dobrowolski S.F., Ellingson C., Coyne T., Grey J., Martin R., Naylor E.W., Koch R., and Levy H.L. Mol. Genet. Metab. 91 (2007) 218-227
44. Zhou L., Vandersteen J., Wang L., Fuller T., Taylor M., Palais B., and Wittwer C.T. Tissue Antigens 64 (2004) 156-164