-
1
-
-
5344244908
-
Chemical similarity searching
-
P. Willett, J. M. Barnard, and G. M. Downs, Chemical similarity searching, J Chem Inf Comput Sci 38 (1998), 983-996.
-
(1998)
J Chem Inf Comput Sci
, vol.38
, pp. 983-996
-
-
Willett, P.1
Barnard, J.M.2
Downs, G.M.3
-
2
-
-
33751246188
-
Similarity-based virtual screening using 2D fingerprints
-
P. Willett, Similarity-based virtual screening using 2D fingerprints, Drug Discov Today 11 (2006), 1046-1053.
-
(2006)
Drug Discov Today
, vol.11
, pp. 1046-1053
-
-
Willett, P.1
-
3
-
-
0036835460
-
Integration of virtual and high-throughput screening
-
J. Bajorath, Integration of virtual and high-throughput screening, Nat Rev Drug Discov 1 (2002), 882-894.
-
(2002)
Nat Rev Drug Discov
, vol.1
, pp. 882-894
-
-
Bajorath, J.1
-
4
-
-
33847207834
-
Molecular similarity analysis in virtual screening: foundations limitations and novel approaches
-
H. Eckert and J. Bajorath, Molecular similarity analysis in virtual screening: foundations limitations and novel approaches, Drug Discov Today 12 (2007), 225-233.
-
(2007)
Drug Discov Today
, vol.12
, pp. 225-233
-
-
Eckert, H.1
Bajorath, J.2
-
5
-
-
0003641826
-
-
M. Johnson, and G. Maggiora (eds) New York, NY, John Wiley & Sons
-
M. Johnson, and G. Maggiora (eds), In Concepts and Applications of Molecular Similarity, New York, NY, John Wiley & Sons, 1990.
-
(1990)
Concepts and Applications of Molecular Similarity
-
-
-
6
-
-
0033606988
-
New 4-point pharmacophore method for molecular similarity and diversity applications: overview of the method and applications, including a novel approach to the design of combinatorial libraries containing privileged substructures
-
J. S. Mason, I. Morize, P. R. Menard, D. L. Cheney, C. Hulme, and R. F. Labaudiniere, New 4-point pharmacophore method for molecular similarity and diversity applications: overview of the method and applications, including a novel approach to the design of combinatorial libraries containing privileged substructures, J Med Chem 42 (1999), 3251-3264.
-
(1999)
J Med Chem
, vol.42
, pp. 3251-3264
-
-
Mason, J.S.1
Morize, I.2
Menard, P.R.3
Cheney, D.L.4
Hulme, C.5
Labaudiniere, R.F.6
-
7
-
-
34247263219
-
A common reference framework for analyzing/comparing proteins and ligands. Fingerprints for ligands and proteins (FLAP) : theory and application
-
M. Baroni, G. Cruciani, S. Sciabola, F. Perruccio, and J. S. Mason, A common reference framework for analyzing/comparing proteins and ligands. Fingerprints for ligands and proteins (FLAP) : theory and application, J Chem Inf Model 47 (2007), 279-294.
-
(2007)
J Chem Inf Model
, vol.47
, pp. 279-294
-
-
Baroni, M.1
Cruciani, G.2
Sciabola, S.3
Perruccio, F.4
Mason, J.S.5
-
8
-
-
14944348527
-
A shape based 3-D scaffold hopping method and its application to a bacterial protein-protein interaction
-
T. S. Rush, J. A. Grant, L. Mosyak, and A. Nicholls, A shape based 3-D scaffold hopping method and its application to a bacterial protein-protein interaction, J Med Chem 48 (2005), 1489-1495.
-
(2005)
J Med Chem
, vol.48
, pp. 1489-1495
-
-
Rush, T.S.1
Grant, J.A.2
Mosyak, L.3
Nicholls, A.4
-
9
-
-
0037361940
-
Similarity searching using reduced graphs
-
V. Gillet, P. Willett, and J. Bradshaw, Similarity searching using reduced graphs, J Chem Inf Comput Sci 43 (2003), 338-345.
-
(2003)
J Chem Inf Comput Sci
, vol.43
, pp. 338-345
-
-
Gillet, V.1
Willett, P.2
Bradshaw, J.3
-
10
-
-
0000131605
-
Chemical fragment generation and clustering software
-
J. M. Barnard and G. M. Downs, Chemical fragment generation and clustering software, J Chem Inf Comput Sci 37 (1997), 141-142.
-
(1997)
J Chem Inf Comput Sci
, vol.37
, pp. 141-142
-
-
Barnard, J.M.1
Downs, G.M.2
-
11
-
-
85196088068
-
-
MACCS Structural Keys, San Leandro, CA, MDL Elsevier [Online]. Available
-
MACCS Structural Keys, San Leandro, CA, MDL Elsevier [Online]. Available: http://www.mdl.com.
-
-
-
-
12
-
-
0004117251
-
-
Version 4.9, Aliso Viejo, CA, Daylight Chemical Information Systems Inc [Online] Available
-
C. A. James and D. Weininger, 2006, Daylight Theory Manual, Version 4.9, Aliso Viejo, CA, Daylight Chemical Information Systems Inc [Online]. Available: http://www.daylight.com/dayhtml/doc/theory
-
(2006)
Daylight Theory Manual
-
-
James, C.A.1
Weininger, D.2
-
13
-
-
0041903760
-
Design and evaluation of a molecular fingerprint involving the transformation of property descriptor values into a binary classification scheme
-
L. Xue, J. W. Godden, F. L. Stahura, and J. Bajorath, Design and evaluation of a molecular fingerprint involving the transformation of property descriptor values into a binary classification scheme, J Chem Inf Comput Sci 43 (2003), 1151-1157.
-
(2003)
J Chem Inf Comput Sci
, vol.43
, pp. 1151-1157
-
-
Xue, L.1
Godden, J.W.2
Stahura, F.L.3
Bajorath, J.4
-
14
-
-
5544290537
-
Similarity searching of chemical databases using atom environment descriptors (MOLPRINT 2D): evaluation of performance
-
A. Bender, H. Y. Mussa, C. Glen, and S. Reiling, Similarity searching of chemical databases using atom environment descriptors (MOLPRINT 2D): evaluation of performance, J Chem Inf Comput Sci 44 (2004), 1708-1718.
-
(2004)
J Chem Inf Comput Sci
, vol.44
, pp. 1708-1718
-
-
Bender, A.1
Mussa, H.Y.2
Glen, C.3
Reiling, S.4
-
15
-
-
33846853978
-
Bayesian interpretation of a distance function for navigating high-dimensional descriptor spaces
-
M. Vogt, J. W. Godden, and J. Bajorath, Bayesian interpretation of a distance function for navigating high-dimensional descriptor spaces, J Chem Inf Model 47 (2007), 39-46.
-
(2007)
J Chem Inf Model
, vol.47
, pp. 39-46
-
-
Vogt, M.1
Godden, J.W.2
Bajorath, J.3
-
16
-
-
21244468757
-
Searching techniques for databases of two- and three-dimensional chemical structures
-
P. Willett, Searching techniques for databases of two- and three-dimensional chemical structures, J Med Chem 48 (2005), 4183-4199.
-
(2005)
J Med Chem
, vol.48
, pp. 4183-4199
-
-
Willett, P.1
-
17
-
-
2942700377
-
Comparison of fingerprint-based methods for virtual screening using multiple bioactive reference structures
-
J. Hert, P. Willet, D. J. Wilton, P. Acklin, K. Azzaoui, E. Jacoby, and A. Schuffenhauer, Comparison of fingerprint-based methods for virtual screening using multiple bioactive reference structures, J Chem Inf Comput Sci 44 (2004), 1177-1185.
-
(2004)
J Chem Inf Comput Sci
, vol.44
, pp. 1177-1185
-
-
Hert, J.1
Willet, P.2
Wilton, D.J.3
Acklin, P.4
Azzaoui, K.5
Jacoby, E.6
Schuffenhauer, A.7
-
18
-
-
0038170311
-
Similarity metrics for ligands reflecting the similarity of the target proteins
-
A. Schuffenhauer, P. Floersheim, P. Acklin, and E. Jacoby, Similarity metrics for ligands reflecting the similarity of the target proteins, J Chem Inf Comput Sci 43 (2003)), 391-405.
-
(2003)
J Chem Inf Comput Sci
, vol.43
, pp. 391-405
-
-
Schuffenhauer, A.1
Floersheim, P.2
Acklin, P.3
Jacoby, E.4
-
19
-
-
0043201432
-
Profile scaling increases the similarity search performance of molecular fingerprints containing numerical descriptors and structural keys
-
L. Xue, J. W. Godden, F. L. Stahura, and J. Bajorath, Profile scaling increases the similarity search performance of molecular fingerprints containing numerical descriptors and structural keys, J Chem Inf Comput Sci 43 (2003), 1218-1225.
-
(2003)
J Chem Inf Comput Sci
, vol.43
, pp. 1218-1225
-
-
Xue, L.1
Godden, J.W.2
Stahura, F.L.3
Bajorath, J.4
-
20
-
-
37849002814
-
Bayesian screening for active compounds in high-dimensional chemical spaces combining property descriptors and molecular fingerprints
-
M. Vogt and J. Bajorath, Bayesian screening for active compounds in high-dimensional chemical spaces combining property descriptors and molecular fingerprints, Chem Biol Drug Des 71 (2008), 8-14.
-
(2008)
Chem Biol Drug Des
, vol.71
, pp. 8-14
-
-
Vogt, M.1
Bajorath, J.2
-
21
-
-
34548180374
-
Methods for computer-aided chemical biology, part 1 design of a benchmark system for the evaluation of compound selectivity
-
D. Stumpfe, H. Ahmed, I. Vogt, and J. Bajorath, Methods for computer-aided chemical biology, part 1: design of a benchmark system for the evaluation of compound selectivity, Chem Biol Drug Des 70 (2007), 182-194.
-
(2007)
Chem Biol Drug Des
, vol.70
, pp. 182-194
-
-
Stumpfe, D.1
Ahmed, H.2
Vogt, I.3
Bajorath, J.4
-
22
-
-
34548168343
-
Methods for computer-aided chemical biology, part 2 evaluation of compound selectivity using 2D fingerprints
-
I. Vogt, D. Stumpfe, H. Ahmed, and J. Bajorath, Methods for computer-aided chemical biology, part 2: evaluation of compound selectivity using 2D fingerprints, Chem Biol Drug Des 70 (2007), 195-205.
-
(2007)
Chem Biol Drug Des
, vol.70
, pp. 195-205
-
-
Vogt, I.1
Stumpfe, D.2
Ahmed, H.3
Bajorath, J.4
-
23
-
-
43949101012
-
Methods for computer-aided chemical biology, part 3 analysis of structure-selectivity relationships through single- or dual-step selectivity searching and Bayesian classification
-
D. Stumpfe, H. Geppert, and J. Bajorath, Methods for computer-aided chemical biology, part 3: analysis of structure-selectivity relationships through single- or dual-step selectivity searching and Bayesian classification, Chem Biol Drug Des 71 (2008), 518-528.
-
(2008)
Chem Biol Drug Des
, vol.71
, pp. 518-528
-
-
Stumpfe, D.1
Geppert, H.2
Bajorath, J.3
-
24
-
-
43949145741
-
Computational analysis of ligand relationships within target families
-
J. Bajorath, Computational analysis of ligand relationships within target families, Curr Opin Chem Biol 12 (2008), 352-358.
-
(2008)
Curr Opin Chem Biol
, vol.12
, pp. 352-358
-
-
Bajorath, J.1
-
25
-
-
0036740917
-
Why do we need so many chemical search methods
-
R. P. Sheridan and S. K. Kearsley, Why do we need so many chemical search methods?, Drug Discov Today 7 (2002)), 903-911.
-
(2002)
Drug Discov Today
, vol.7
, pp. 903-911
-
-
Sheridan, R.P.1
Kearsley, S.K.2
-
26
-
-
37849012382
-
Introduction of a generally applicable method to estimate retrieval of active molecules for similarity searching using fingerprints
-
M. Vogt and J. Bajorath, Introduction of a generally applicable method to estimate retrieval of active molecules for similarity searching using fingerprints, Chem Med Chem 2 (2007), 1311-1320.
-
(2007)
Chem Med Chem
, vol.2
, pp. 1311-1320
-
-
Vogt, M.1
Bajorath, J.2
-
27
-
-
34247216044
-
Introduction of an information-theoretic method to predict the recovery rates of active compounds for Bayesian in silico screening: theory and screening trials
-
M. Vogt and J. Bajorath, Introduction of an information-theoretic method to predict the recovery rates of active compounds for Bayesian in silico screening: theory and screening trials, J Chem Inf Model 47 (2007), 337-341.
-
(2007)
J Chem Inf Model
, vol.47
, pp. 337-341
-
-
Vogt, M.1
Bajorath, J.2
-
29
-
-
41549160356
-
Bayesian similarity searching in high-dimensional descriptor spaces combined with Kullback-Leibler descriptor divergence analysis
-
M. Vogt and J. Bajorath, Bayesian similarity searching in high-dimensional descriptor spaces combined with Kullback-Leibler descriptor divergence analysis, J Chem Inf Model 48 (2008), 247-255.
-
(2008)
J Chem Inf Model
, vol.48
, pp. 247-255
-
-
Vogt, M.1
Bajorath, J.2
-
30
-
-
85196096732
-
Unsupervised forward selection: a method for eliminating redundant variables
-
D. C. Whitley, M. G. Ford, and D. J. Livingstone, Unsupervised forward selection: a method for eliminating redundant variables, J Chem Inf Comput Sci 40 (2003), 391-405.
-
(2003)
J Chem Inf Comput Sci
, vol.40
, pp. 391-405
-
-
Whitley, D.C.1
Ford, M.G.2
Livingstone, D.J.3
-
31
-
-
54549103863
-
-
Molecular Drug Data Report (MDDR). San Leandro, CA
-
Molecular Drug Data Report (MDDR). San Leandro, CA, MDL Information Systems Inc, 2005.
-
(2005)
MDL Information Systems Inc
-
-
-
32
-
-
13844312649
-
ZINC-a free database of commercially available compounds for virtual screening
-
J. J. Irwin and B. K. Shoichet, ZINC-a free database of commercially available compounds for virtual screening, J Chem Inf Model 45 (2005), 177-182.
-
(2005)
J Chem Inf Model
, vol.45
, pp. 177-182
-
-
Irwin, J.J.1
Shoichet, B.K.2
-
33
-
-
3042549719
-
-
Molecular Operating Environment (MOE), Version 2007.09, Montreal, Quebec, Canada H3 B 3X3
-
Molecular Operating Environment (MOE), Version 2007.09, Montreal, Quebec, Canada, Chemical Computing Group Inc., H3 B 3X3, http://www.chemcomp.com.
-
Chemical Computing Group Inc
-
-
-
34
-
-
0001639610
-
Chemical similarity using geometric atom pair descriptors
-
R. P. Sheridan, M. D. Miller, D. J. Underwood, and S. K. Kearsley, Chemical similarity using geometric atom pair descriptors, J Chem Inf Comput Sci 36 (1996), 128-136.
-
(1996)
J Chem Inf Comput Sci
, vol.36
, pp. 128-136
-
-
Sheridan, R.P.1
Miller, M.D.2
Underwood, D.J.3
Kearsley, S.K.4
-
35
-
-
0036589071
-
Accurate partitioning of compounds belonging to diverse activity classes
-
L. Xue and J. Bajorath, Accurate partitioning of compounds belonging to diverse activity classes, J Chem Inf Comput Sci 42 (2002), 757-764.
-
(2002)
J Chem Inf Comput Sci
, vol.42
, pp. 757-764
-
-
Xue, L.1
Bajorath, J.2
-
36
-
-
28944454140
-
Anatomy of fingerprint search calculations on structurally diverse sets of active compounds
-
J. W. Godden F. L. Florence, and J. Bajorath, Anatomy of fingerprint search calculations on structurally diverse sets of active compounds, J Chem Inf Model 45 (2005), 1812-1819.
-
(2005)
J Chem Inf Model
, vol.45
, pp. 1812-1819
-
-
Godden, J.W.1
Florence, F.L.2
Bajorath, J.3
-
37
-
-
85196121003
-
-
Comprehensive Medicinal Chemistry Database (CMC-3D), Version 99.1, San Leandro, CA
-
Comprehensive Medicinal Chemistry Database (CMC-3D), Version 99.1, San Leandro, CA, MDL Information Systems Inc, 1999.
-
(1999)
MDL Information Systems Inc
-
-
-
38
-
-
0033861845
-
The multiplicity of serotonin receptors: uselessly diverse molecules or an embarrassment of riches
-
B. L. Roth, W. K. Kroeze, S. Patel, and E. Lopez, The multiplicity of serotonin receptors: uselessly diverse molecules or an embarrassment of riches?, Neuroscientist 6 (2006), 252-262.
-
(2006)
Neuroscientist
, vol.6
, pp. 252-262
-
-
Roth, B.L.1
Kroeze, W.K.2
Patel, S.3
Lopez, E.4
-
39
-
-
0035658264
-
BindingDB: a web-accessible molecular recognition database
-
X. Chen, M. Liu, and M. K. Gilson, BindingDB: a web-accessible molecular recognition database, Combin Chem & High-Throughput Screen 4 (2001), 719-725.
-
(2001)
Combin Chem & High-Throughput Screen
, vol.4
, pp. 719-725
-
-
Chen, X.1
Liu, M.2
Gilson, M.K.3
-
40
-
-
85196112972
-
-
Synthline Drug Database on STN International, taken from Drugs of the Future (comprehensive drug monographs, Prous Science) present
-
Synthline Drug Database on STN International, taken from Drugs of the Future (comprehensive drug monographs, Prous Science). Prous Science: Barcelona, Spain, 1984- present.
-
(1984)
Prous Science: Barcelona, Spain
-
-
|