Habitat continuity and geographic distance predict population genetic differentiation in giant kelp

Ecology

Volumn 91, Issue 1, 2010, Pages 49-56

  Filipe, Alberto ^a   Raimondi, Peter T ^b   Reed, Daniel C ^c   Coelho, Nelson C ^a   Raphael, Leblois ^d   Allison, Whitmer ^c   Serrão, Ester A ^a  

^a UNIVERSITY OF ALGARVE   (Portugal)

^b UNIVERSITY OF CALIFORNIA   (United States)

^c UNIVERSITY OF CALIFORNIA   (United States)

^d MUSÉUM NATIONAL D'HISTOIRE NATURELLE   (France)

Author keywords

Connectivity; Effective population size; GIS; Habitat continuity; Isolation by distance; Kelp; Macrocystis pyrifera; Marine dispersal; Microsatellites; Population genetics

Indexed keywords

MICROSATELLITE DNA;

ALLELE; BROWN ALGA; ECOLOGICAL APPROACH; GENE FLOW; GENETIC DIFFERENTIATION; GENETIC MARKER; GENETIC STRUCTURE; GIS; MACROALGA; POPULATION SIZE; SIMULATION;

ARTICLE; BIOLOGICAL MODEL; DEMOGRAPHY; ECOSYSTEM; GENETIC VARIABILITY; GENETICS; MACROCYSTIS; PHYSIOLOGY; SEA;

DEMOGRAPHY; ECOSYSTEM; GENETIC VARIATION; MACROCYSTIS; MICROSATELLITE REPEATS; MODELS, GENETIC; OCEANS AND SEAS;

CALIFORNIA; SANTA BARBARA CHANNEL; UNITED STATES;

BACTERIA (MICROORGANISMS); MACROCYSTIS; MACROCYSTIS PYRIFERA;

EID: 77649201756     PISSN: 00129658     EISSN: None     Source Type: Journal    
DOI: 10.1890/09-0050.1     Document Type: Article

References (51)

1. Alberto, F. 2009. MsatAllele-1.0: an R package to visualize the binning of microsatellite alleles. Journal of Heredity 100:394-397.
2. Alberto, F., C. Whitmer, N. C. Coelho, M. Zippay, E. VarelaAlvarez, P. T. Raimondi, D. Reed, and E. A. Serrão. 2009. Microsatellite markers for the giant kelp Macrocystis pyrifera. Conservation Genetics, [doi: 10.1007/s 10592-10009-19853-110599]
3. Anderson, E. K., and W. North. 1966. In situ studies of spore production and dispersal in the giant kelp Macrocystis pyrifera. Pages 73-86 in Proceedings International Seaweed symposium. Pergamon Press, Oxford, UK.
4. Arnaud, J. F. 2003. Metapopulation genetic structure and migration pathways in the land snail Helix aspersa: influence of landscape heterogeneity. Landscape Ecology 18:333-346.
5. Belkhir, K., P. Borsa, L. Chikhi, N. Raufaste, and F. Bonhomme. 2001. GENETIX 4.02, logiciel sous Windows TM pour la génétique des populations. Laboratoire Génome, Populations, Interactions, CNRS UMR 5000. Université de Montpellier II, Montpellier, France.
6. Billot, C., C. R. Engel, S. Rousvoal, B. Kloareg, and. M. Valero. 2003. Current patterns, habitat discontinuities and population genetic structure: the case of the kelp Laminaria digitata in the English Channel. Marine Ecology Progress Series 253: 111-121.
7. Bohonak, A. J. 1999. Dispersal, gene flow, and population structure. Quarterly Review of Biology 74:21-45. (Pubitemid 29471638)
8. Boland, W., F. J. Marner, L. Jaenicke, D. G. Muller, and E. Folster. 1983. Comparative receptor study in gamete Chemotaxis of the seaweeds Ectocarpus siliculosus and Cutleria multifida: an approach to interspecific communication of algal gametes. European Journal of Biochemistry 134: 97-103.
9. Burnham, K. P., and D. R. Anderson. 1998. Model selection and inference: a practical information-theoretical approach. Springer-Verlag, New York, New York, USA.
10. Chapuis, M. P., and A. Estoup. 2007. Microsatellite null alleles and estimation of population differentiation. Molecular Biology and Evolution 24:621-631. (Pubitemid 46355787)
11. Coyer, J. A., G. J. Smith, and. R. A. Andersen. 2001, Evolution of Macrocystis spp. (Phaeophyceae) as determined by ITS1 and ITS2 sequences. Journal of Phycology 37:574-585.
12. Dayton, P. K. 1985. Ecology of kelp communities. Annual Review of Ecology and Systematics 16:215-245.
13. Engel, C. R., M.-L. Guillemin, A.-M. Jacob, M. Valero, and F. Viard. 2008. Isolation of microsatellite loci from the kelp, Saccorhiza polyschides (Heterokontophyta, incertae sedis). Molecular Ecology Resources 8:406-408.
14. Epps, C. W., J. D. Wehausen, V. C. Bleich, S. G. Torres, and J. S. Brashares. 2007. Optimizing dispersal and corridor models using landscape genetics. Journal of Applied Ecology 44:714-724.
15. Frankham, R. 1995. Effective population-size adult-population size ratios in wildlife: a review. Genetical Research 66:95-107.
16. Gaylord, B., D. C. Reed, P. T. Raimondi, and L. Washburn. 2006. Macroalgal spore dispersal, in coastal environments: mechanistic insights revealed by theory and experiment. Ecological Monographs 76:481-502. (Pubitemid 44878539)
17. Gaylord, B., D. C. Reed, P. T. Raimondi, L. Washburn, and S. R. McLean. 2002. A physically based model of macroalgal spore dispersal in the wave and current-dominated nearshore. Ecology 83:1239-1251. (Pubitemid 36524828)
18. Graham, M. H. 2004. Effects of local deforestation on the diversity and structure of Southern California giant kelp forest food. webs. Ecosystems 7:341-357.
19. Graham, M. H., J. A. Vasquez, and A. H. Buschmann. 2007. Global ecology of the giant kelp Macrocystis: from ecotypes to ecosystems. Oceanography and Marine Biology: an Annual Review 45:39-88.
20. Hedgecock, D. 1994. Does variance in reproductive success limit effective population sizes of marine organisms. Pages 122-134 in A, R. Beaumont, editor. Genetics and evolution of aquatic organisms. Chapman and Hall, London, UK.
21. Hobday, A. J. 2000. Abundance and dispersal, of drifting kelp Macrocystis pyrifera rafts in the Southern California Bight. Marine Ecology Progress Series 195:101-116.
22. Keller, I., and C. R. Largiader. 2003. Recent habitat fragmentation caused by major roads leads to reduction of gene flow and loss of genetic variability in ground beetles. Proceedings of the Royal Society B 270:417-423. (Pubitemid 36250167)
23. Kimura, M., and G. H. Weiss. 1964. The stepping stone model of population structure and the decrease of genetic correlation with distance. Genetics 49:561-576.
24. Kinlan, B. P., and S. D. Gaines. 2003. Propagule dispersal in marine and terrestrial environments: A community perspective. Ecology 84:2007-2020.
25. Leblois, R., A., Estoup, and F. Rousset. 2009. IBDSim: a computer program to simulate genotypic data under isolation by distance. Molecular Ecology Resources 9:107-109.
26. Leclerc, E., Y. Mailhot, M. Mingelbier, and L. Bematchez. 2008. The landscape genetics of yellow perch (Perca flavescens) in a large fluvial ecosystem. Molecular Ecology 17:1702-1717.
27. Manel, S., M. K. Schwartz, G. Luikart, and. P. Taberlet. 2003. Landscape genetics: combining landscape ecology and population genetics. Trends in Ecology and Evolution 18:189-197.
28. Manier, M. K., and S. J. Arnold, 2006. Ecological correlates of population genetic structure: a comparative approach using a vertebrate metacommunity. Proceedings of the Royal Society B 273:3001-3009.
29. Michels, E., K. Cottenie, L. Neys, K. De Gelas, P. Coppin, and. L. De Meester. 2001. Geographical and genetic distances among zooplankton populations in a set of interconnected ponds: a plea for using GIS modelling of the effective geographical distance. Molecular Ecology 10:1929-1938.
30. Palumbi, S. R, 2003. Population genetics, demographic connectivity, and the design of marine reserves. Ecological Applications 13(Supplement): S146-S158.
31. R Development Core Team. 2008. R: A language and environment for statistical computing. R Foundation for Statistical Computing, Vienna, Austria. (http://www.R-project.org)
32. Reed, D. C, C. D. Amsler, and A. W. Ebeling. 1992. Dispersal in kelps: factors affecting spore swimming and competence. Ecology 73:1577-1585.
33. Reed, D. C., T. W. Anderson, A. W. Ebeling, and M. Anghera. 1997. The role of reproductive synchrony in the colonization potential of kelp. Ecology 78:2443-2457.
34. Reed, D. C., B. P. Kinlan, P. T. Raimondi, L. Washburn, B. Gaylord, and P. T. Drake. 2006. A metapopulation perspective on the patch dynamics of giant kelp in Southern California. Pages 352-386 in J. Kritzer and P. F. Sale, editors. Marine metapopulations. Academic Press, San Diego, California, USA.
35. Reed, D. C., M. Neushul, and A. W. Ebeling. 1991. Role of settlement density on gametophyte growth and reproduction in the kelps Pterygophora californka and Macrocystis pyrifera (Phaeophyceae). Journal of Phycology 27:361-366.
36. Reed,'D. C., S. C. Schroeter, and P. T. Raimondi. 2004. Spore supply and habitat availability as sources of recruitment limitation in the giant kelp Macrocystis pyrifera (Phaeophyceae). Journal of Phycology 40:275-284.
37. Riginos, C, and M. W. Nachman. 2001, Population subdivision in marine environments: the contributions of biogeography, geographical distance and discontinuous habitat to genetic differentiation in a blennioid fish, Axoclinus nigricaudus. Molecular Ecology 10:1439-1453. (Pubitemid 32526119)
38. Rousset, F. 2001. Inferences from spatial population genetics. Pages 945-977 in D. Balding, M. Bishop, and C. Canning, editors. Handbook, of statistical genetics. John Wiley and Sons, Chichester, UK.
39. Rousset, F. 2008. GENEPOP'007: a complete re-implementation of the GENEPOP software for Windows and Linux. Molecular Ecology Resources 8:103-106. (Pubitemid 350231212)
40. Rousset, F., and M. Raymond. 1997. Statistical analyses of population genetic data: new tools, old concepts. Trends in Ecology and Evolution 12:313-317. (Pubitemid 28003513)
41. Shoemaker, D. D. W., and J. Jaenike. 1997. Habitat continuity and the genetic structure of Drosophila populations. Evolution 51:1326-1332.
42. Slatkin, M. 1987. Gene flow and the geographic structure of natural populations. Science 236:787-792. (Pubitemid 18286453)
43. Spear, S. F., C. R, Peterson, M. D. Matocq, and A. Storfer. 2005. Landscape genetics of the blotched tiger salamander (Ambystoma tigrinum melanostictum). Molecular Ecology 14: 2553-2564.
44. Storfer, A., M. A. Murphy, J. S. Evans, C. S. Goldberg, S. Robinson, S. F. Spear, R. Dezzani, E. Delmelle, L. Vierling, and L. P. Waits. 2007. Putting the "landscape" in landscape genetics. Heredity 98:128-142.
45. Sumner, J., T. Jessop, D. Paetkau, and C. Moritz. 2004. Limited effect of anthropogenic habitat fragmentation on molecular diversity in a rain forest skink, Gnypetoscincus queenslandiae. Molecular Ecology 13:259-269.
46. Van Oosterhout, C., W. F. Hutchinson, D. P. M. Wills, and P. Shipley. 2004. MICRO-CHECKER: software for identifying and correcting genotyping errors in microsatellite data. Molecular Ecology Notes 4:535-538. (Pubitemid 39147523)
47. Waples, R. S. 2002. Definition and estimation of effective population size in the conservation of endangered species. Pages 147-168 in S. R. Beissinger and D. R. McCullough, editors. Population viability analysis. The University of Chicago Press, Chicago, Illinois, USA.
48. Weir, B. S., and C. C. Cockerham. 1984. Estimating F statistics for the analysis of population structure. Evolution 38:1358-1370.
49. Wormersley, H. B. S. 1954. The species of Macrocystis with special reference to those on southern Australia coasts. University of California Publications in Botany 27:109-132.
50. Wright, S. 1931. Evolution in Mendelian populations. Genetics 16:0097-0159.
51. Wright, S. 1943. Isolation by distance. Genetics 28:114-138.