-
1
-
-
0034821884
-
Codon usage and tRNA genes in eukaryotes: correlation of codon usage diversity with translation efficiency and with CG-dinucleotide usage as assessed by multivariate analysis
-
10.1007/s002390010219, 11675589
-
Kanaya S, Yamada Y, Kinouchi M, Kudo Y, Ikemura T. Codon usage and tRNA genes in eukaryotes: correlation of codon usage diversity with translation efficiency and with CG-dinucleotide usage as assessed by multivariate analysis. Journal of molecular evolution 2001, 53(4):290-298. 10.1007/s002390010219, 11675589.
-
(2001)
Journal of molecular evolution
, vol.53
, Issue.4
, pp. 290-298
-
-
Kanaya, S.1
Yamada, Y.2
Kinouchi, M.3
Kudo, Y.4
Ikemura, T.5
-
2
-
-
0019824131
-
Correlation between the abundance of Escherichia coli transfer RNAs and the occurrence of the respective codons in its protein genes: a proposal for a synonymous codon choice that is optimal for the E. coli translational system
-
10.1016/0022-2836(81)90003-6, 6175758
-
Ikemura T. Correlation between the abundance of Escherichia coli transfer RNAs and the occurrence of the respective codons in its protein genes: a proposal for a synonymous codon choice that is optimal for the E. coli translational system. J Mol Biol 1981, 151(3):389-409. 10.1016/0022-2836(81)90003-6, 6175758.
-
(1981)
J Mol Biol
, vol.151
, Issue.3
, pp. 389-409
-
-
Ikemura, T.1
-
3
-
-
0025775913
-
Correlations between the compositional properties of human genes, codon usage, and amino acid composition of proteins
-
10.1007/BF02102652, 1908021
-
D'Onofrio G, Mouchiroud D, Aïssani B, Gautier C, Bernardi G. Correlations between the compositional properties of human genes, codon usage, and amino acid composition of proteins. Journal of Molecular Evolution 1991, 32(6):504-510. 10.1007/BF02102652, 1908021.
-
(1991)
Journal of Molecular Evolution
, vol.32
, Issue.6
, pp. 504-510
-
-
D'Onofrio, G.1
Mouchiroud, D.2
Aïssani, B.3
Gautier, C.4
Bernardi, G.5
-
4
-
-
0025625208
-
Codon usage and secondary structure of mRNA
-
Zama M. Codon usage and secondary structure of mRNA. Nucleic Acids Symp Ser 1990, 22:93-94.
-
(1990)
Nucleic Acids Symp Ser
, vol.22
, pp. 93-94
-
-
Zama, M.1
-
5
-
-
0035941484
-
Codon bias at the 3'-side of the initiation codon is correlated with translation initiation efficiency in Escherichia coli
-
10.1016/S0378-1119(00)00550-3, 11223267
-
Stenström CM, Jin H, Major LL, Tate WP, Isaksson LA. Codon bias at the 3'-side of the initiation codon is correlated with translation initiation efficiency in Escherichia coli. Gene 2001, 263(1-2):273-284. 10.1016/S0378-1119(00)00550-3, 11223267.
-
(2001)
Gene
, vol.263
, Issue.1-2
, pp. 273-284
-
-
Stenström, C.M.1
Jin, H.2
Major, L.L.3
Tate, W.P.4
Isaksson, L.A.5
-
6
-
-
0035220937
-
A simple model based on mutation and selection explains trends in codon and amino-acid usage and GC composition within and across genomes
-
Knight RD, Freeland SJ, Landweber LF. A simple model based on mutation and selection explains trends in codon and amino-acid usage and GC composition within and across genomes. Genome Biol 2001, 2(4):1-13.
-
(2001)
Genome Biol
, vol.2
, Issue.4
, pp. 1-13
-
-
Knight, R.D.1
Freeland, S.J.2
Landweber, L.F.3
-
7
-
-
0029931535
-
Synonymous codon bias is related to gene length in Escherichia coli: selection for translational accuracy?
-
Eyre-Walker A. Synonymous codon bias is related to gene length in Escherichia coli: selection for translational accuracy?. 1996, 13(6):864-872.
-
(1996)
, vol.13
, Issue.6
, pp. 864-872
-
-
Eyre-Walker, A.1
-
8
-
-
0032190244
-
Gene length and codon usage bias in Drosophila melanogaster, Saccharomyces cervisiae and Escherichia coli
-
10.1093/nar/26.19.4540, 147868, 9841348
-
Marín A, González F, Gutiérrez G, Oliver JL. Gene length and codon usage bias in Drosophila melanogaster, Saccharomyces cervisiae and Escherichia coli. Nucleic Acids Research 1998, 26(19):4540. 10.1093/nar/26.19.4540, 147868, 9841348.
-
(1998)
Nucleic Acids Research
, vol.26
, Issue.19
, pp. 4540
-
-
Marín, A.1
González, F.2
Gutiérrez, G.3
Oliver, J.L.4
-
9
-
-
0031697801
-
The relationship between synonymous codon usage and protein structure
-
10.1016/S0014-5793(98)00955-7, 9738458
-
Tao X, Dafu D. The relationship between synonymous codon usage and protein structure. FEBS Letters 1998, 434(1-2):93-96. 10.1016/S0014-5793(98)00955-7, 9738458.
-
(1998)
FEBS Letters
, vol.434
, Issue.1-2
, pp. 93-96
-
-
Tao, X.1
Dafu, D.2
-
10
-
-
34548398528
-
Expression and purification of ancrod, an anticoagulant drug, in Pichia pastoris
-
10.1016/j.pep.2007.07.002, 17707656
-
Yu X, Li Z, Xia X, Fang H, Zhou C, Chen H. Expression and purification of ancrod, an anticoagulant drug, in Pichia pastoris. Protein Expression and Purification 2007, 55(2):257-261. 10.1016/j.pep.2007.07.002, 17707656.
-
(2007)
Protein Expression and Purification
, vol.55
, Issue.2
, pp. 257-261
-
-
Yu, X.1
Li, Z.2
Xia, X.3
Fang, H.4
Zhou, C.5
Chen, H.6
-
11
-
-
34249684877
-
Codon usage bias in Chlamydia trachomatis and the effect of codon modification in the MOMP gene on immune responses to vaccination
-
10.1139/O06-211, 17534403
-
Zhao WM, Wang H, Zhou YB, Luan Y, Qi M, Zheng Y, Cheng YZ, Tang W, Liu J, Yu H. Codon usage bias in Chlamydia trachomatis and the effect of codon modification in the MOMP gene on immune responses to vaccination. Biochemistry and Cell Biology 2007, 85(2):218-226. 10.1139/O06-211, 17534403.
-
(2007)
Biochemistry and Cell Biology
, vol.85
, Issue.2
, pp. 218-226
-
-
Zhao, W.M.1
Wang, H.2
Zhou, Y.B.3
Luan, Y.4
Qi, M.5
Zheng, Y.6
Cheng, Y.Z.7
Tang, W.8
Liu, J.9
Yu, H.10
-
12
-
-
34248396315
-
Characterization of a thermostable cyclodextrin glucanotransferase from Pyrococcus furiosus DSM3638
-
10.1007/s00792-007-0061-6, 17308866
-
Lee MH, Yang SJ, Kim JW, Lee HS, Kim JW, Park KH. Characterization of a thermostable cyclodextrin glucanotransferase from Pyrococcus furiosus DSM3638. Extremophiles 2007, 11(3):537-541. 10.1007/s00792-007-0061-6, 17308866.
-
(2007)
Extremophiles
, vol.11
, Issue.3
, pp. 537-541
-
-
Lee, M.H.1
Yang, S.J.2
Kim, J.W.3
Lee, H.S.4
Kim, J.W.5
Park, K.H.6
-
13
-
-
44349180884
-
Genome Evolution and the Emergence of Fruiting Body Development in Myxococcus xanthus
-
Goldman B, Bhat S, Shimkets LJ. Genome Evolution and the Emergence of Fruiting Body Development in Myxococcus xanthus. PLoS ONE 2007, 2(12).
-
(2007)
PLoS ONE
, vol.2
, Issue.12
-
-
Goldman, B.1
Bhat, S.2
Shimkets, L.J.3
-
14
-
-
34548844475
-
Analysis of structure, function, and evolutionary origin of the ob gene product--leptin
-
Ravishankar Ram M, Beena G, Ragunathan P, Malathi R. Analysis of structure, function, and evolutionary origin of the ob gene product--leptin. J Biomol Struct Dyn 2007, 25(2):183-188.
-
(2007)
J Biomol Struct Dyn
, vol.25
, Issue.2
, pp. 183-188
-
-
Ravishankar Ram, M.1
Beena, G.2
Ragunathan, P.3
Malathi, R.4
-
15
-
-
0019949369
-
Correlation between the abundance of yeast transfer RNAs and the occurrence of the respective codons in protein genes
-
Ikemura T. Correlation between the abundance of yeast transfer RNAs and the occurrence of the respective codons in protein genes. J MolBiol 1982, 158(4):573-579.
-
(1982)
J MolBiol
, vol.158
, Issue.4
, pp. 573-579
-
-
Ikemura, T.1
-
16
-
-
0021958933
-
Codon usage and tRNA content in unicellular and multicellular organisms
-
Ikemura T. Codon usage and tRNA content in unicellular and multicellular organisms. Mol Biol Evol 1985, 2(1):13-34.
-
(1985)
Mol Biol Evol
, vol.2
, Issue.1
, pp. 13-34
-
-
Ikemura, T.1
-
17
-
-
0030731696
-
Codon Usage Bias and tRNA Abundance in Drosophila
-
10.1007/PL00006256, 9342399
-
Moriyama EN. Codon Usage Bias and tRNA Abundance in Drosophila. Journal of Molecular Evolution 1997, 45(5):514-523. 10.1007/PL00006256, 9342399.
-
(1997)
Journal of Molecular Evolution
, vol.45
, Issue.5
, pp. 514-523
-
-
Moriyama, E.N.1
-
18
-
-
0034237669
-
TRNA gene number and codon usage in the C. elegans genome are co-adapted for optimal translation of highly expressed genes
-
10.1016/S0168-9525(00)02041-2, 10858656
-
Duret L. tRNA gene number and codon usage in the C. elegans genome are co-adapted for optimal translation of highly expressed genes. Trends in Genetics 2000, 16(7):287-289. 10.1016/S0168-9525(00)02041-2, 10858656.
-
(2000)
Trends in Genetics
, vol.16
, Issue.7
, pp. 287-289
-
-
Duret, L.1
-
19
-
-
0344237338
-
Unexpected correlations between gene expression and codon usage bias from microarray data for the whole Escherichia coli K-12 genome
-
10.1093/nar/gkg897, 290265, 14627830
-
Dos Reis M, Wernisch L, Savva R, Journals O. Unexpected correlations between gene expression and codon usage bias from microarray data for the whole Escherichia coli K-12 genome. Nucleic Acids Research 2003, 31(23):6976-6985. 10.1093/nar/gkg897, 290265, 14627830.
-
(2003)
Nucleic Acids Research
, vol.31
, Issue.23
, pp. 6976-6985
-
-
Dos Reis, M.1
Wernisch, L.2
Savva, R.3
Journals, O.4
-
20
-
-
0142092546
-
The signature of selection mediated by expression on human genes
-
10.1101/gr.641103, 403694, 12975314
-
Urrutia AO, Hurst LD. The signature of selection mediated by expression on human genes. Genome Res 2003, 13(10):2260-2264. 10.1101/gr.641103, 403694, 12975314.
-
(2003)
Genome Res
, vol.13
, Issue.10
, pp. 2260-2264
-
-
Urrutia, A.O.1
Hurst, L.D.2
-
21
-
-
13444291526
-
Codon bias as a factor in regulating expression via translation rate in the human genome
-
10.1016/j.gene.2004.11.035, 15716084
-
Lavner Y, Kotlar D. Codon bias as a factor in regulating expression via translation rate in the human genome. Gene 2004, 345(1):127-38. 10.1016/j.gene.2004.11.035, 15716084.
-
(2004)
Gene
, vol.345
, Issue.1
, pp. 127-138
-
-
Lavner, Y.1
Kotlar, D.2
-
22
-
-
37049036395
-
On the origin of synonymous codon usage divergence between thermophilic and mesophilic prokaryotes
-
10.1016/j.febslet.2007.11.054, 18047839
-
Basak S, Roy S, Ghosh TC. On the origin of synonymous codon usage divergence between thermophilic and mesophilic prokaryotes. FEBS Letters 2007, 581(30):5825-30. 10.1016/j.febslet.2007.11.054, 18047839.
-
(2007)
FEBS Letters
, vol.581
, Issue.30
, pp. 5825-5830
-
-
Basak, S.1
Roy, S.2
Ghosh, T.C.3
-
23
-
-
37549022289
-
Patterns of Mutation and Selection at Synonymous Sites in Drosophila
-
10.1093/molbev/msm196, 18000010
-
Singh ND, DuMont B, Vanessa L, Hubisz MJ, Nielsen R, Aquadro CF. Patterns of Mutation and Selection at Synonymous Sites in Drosophila. Molecular Biology and Evolution 2007, 24(12):2687. 10.1093/molbev/msm196, 18000010.
-
(2007)
Molecular Biology and Evolution
, vol.24
, Issue.12
, pp. 2687
-
-
Singh, N.D.1
DuMont, B.2
Vanessa, L.3
Hubisz, M.J.4
Nielsen, R.5
Aquadro, C.F.6
-
24
-
-
36049005257
-
Cytosine deamination and selection of CpG suppressed clones are the two major independent biological forces that shape codon usage bias in coronaviruses
-
10.1016/j.virol.2007.08.010, 17881030
-
Woo PCY, Wong BHL, Huang Y, Lau SKP, Yuen KY. Cytosine deamination and selection of CpG suppressed clones are the two major independent biological forces that shape codon usage bias in coronaviruses. Virology 2007, 369(2):431-442. 10.1016/j.virol.2007.08.010, 17881030.
-
(2007)
Virology
, vol.369
, Issue.2
, pp. 431-442
-
-
Woo, P.C.Y.1
Wong, B.H.L.2
Huang, Y.3
Lau, S.K.P.4
Yuen, K.Y.5
-
25
-
-
34247600158
-
Unusual Codon Bias in Vinyl Chloride Reductase Genes of Dehalococcoides Species
-
10.1128/AEM.02768-06, 1855607, 17308190
-
McMurdie PJ, Behrens SF, Holmes S, Spormann AM. Unusual Codon Bias in Vinyl Chloride Reductase Genes of Dehalococcoides Species. Applied and Environmental Microbiology 2007, 73(8):2744-2747. 10.1128/AEM.02768-06, 1855607, 17308190.
-
(2007)
Applied and Environmental Microbiology
, vol.73
, Issue.8
, pp. 2744-2747
-
-
McMurdie, P.J.1
Behrens, S.F.2
Holmes, S.3
Spormann, A.M.4
-
26
-
-
34248184632
-
Rapid divergence of codon usage patterns within the rice genome
-
Wang HC, Hickey DA. Rapid divergence of codon usage patterns within the rice genome. BMC Evol Biol 8;7(Suppl 1):S6.
-
BMC Evol Biol
, vol.7-8
, Issue.SUPPL. 1
-
-
Wang, H.C.1
Hickey, D.A.2
-
27
-
-
0023650543
-
The codon adaptation index-a measure of directional synonymous codon usage bias, and its potential applications
-
10.1093/nar/15.3.1281, 340524, 3547335
-
Sharp PM, Li WH. The codon adaptation index-a measure of directional synonymous codon usage bias, and its potential applications. Nucleic Acids Res 1987, 15(3):1281-1295. 10.1093/nar/15.3.1281, 340524, 3547335.
-
(1987)
Nucleic Acids Res
, vol.15
, Issue.3
, pp. 1281-1295
-
-
Sharp, P.M.1
Li, W.H.2
-
29
-
-
0024977865
-
Codon usage in plant genes
-
10.1093/nar/17.2.477, 331598, 2644621
-
Murray EE, Lotzer J, Eberle M. Codon usage in plant genes. Nucleic Acids Research 1989, 17(2):477. 10.1093/nar/17.2.477, 331598, 2644621.
-
(1989)
Nucleic Acids Research
, vol.17
, Issue.2
, pp. 477
-
-
Murray, E.E.1
Lotzer, J.2
Eberle, M.3
-
30
-
-
0022405085
-
Sense codons are found in specific contexts
-
10.1016/0022-2836(85)90239-6, 3892014
-
Yarus M, Folley LS. Sense codons are found in specific contexts. J Mol Biol 1985, 182(4):529-540. 10.1016/0022-2836(85)90239-6, 3892014.
-
(1985)
J Mol Biol
, vol.182
, Issue.4
, pp. 529-540
-
-
Yarus, M.1
Folley, L.S.2
-
31
-
-
0024673103
-
Nonrandom utilization of codon pairs in Escherichia coli
-
Gutman GA, Hatfield GW. Nonrandom utilization of codon pairs in Escherichia coli. Proc Natl Acad Sci US A 1989, 86(10):3699-3703.
-
(1989)
Proc Natl Acad Sci US A
, vol.86
, Issue.10
, pp. 3699-3703
-
-
Gutman, G.A.1
Hatfield, G.W.2
-
32
-
-
0024427630
-
Codon contexts from weakly expressed genes reduce expression in vivo
-
10.1016/0022-2836(89)90003-X, 2511323
-
Folley LS, Yarus M. Codon contexts from weakly expressed genes reduce expression in vivo. J Mol Biol 1989, 209(3):359-378. 10.1016/0022-2836(89)90003-X, 2511323.
-
(1989)
J Mol Biol
, vol.209
, Issue.3
, pp. 359-378
-
-
Folley, L.S.1
Yarus, M.2
-
33
-
-
0029162727
-
Codon Pair Utilization Biases Influence Translational Elongation Step Times
-
10.1074/jbc.270.39.22801, 7559409
-
Irwin B, Heck JD, Hatfield G. Codon Pair Utilization Biases Influence Translational Elongation Step Times. Journal of Biological Chemistry 1995, 270(39):22801. 10.1074/jbc.270.39.22801, 7559409.
-
(1995)
Journal of Biological Chemistry
, vol.270
, Issue.39
, pp. 22801
-
-
Irwin, B.1
Heck, J.D.2
Hatfield, G.3
-
34
-
-
0038620436
-
Codon pairs in the genome of Escherichia coli
-
10.1093/bioinformatics/btg082, 12761062
-
Boycheva S, Chkodrov G, Ivanov I. Codon pairs in the genome of Escherichia coli. Bioinformatics 2003, 19(8):987-998. 10.1093/bioinformatics/btg082, 12761062.
-
(2003)
Bioinformatics
, vol.19
, Issue.8
, pp. 987-998
-
-
Boycheva, S.1
Chkodrov, G.2
Ivanov, I.3
-
35
-
-
33644889434
-
Comparative context analysis of codon pairs on an ORFeome scale
-
10.1186/gb-2005-6-3-r28, 1088947, 15774029
-
Moura G, Pinheiro M, Silva R, Miranda I, Afreixo V, Dias G, Freitas A, Oliveira JL, Santos MA. Comparative context analysis of codon pairs on an ORFeome scale. Genome Biol 2005, 6(3):R28. 10.1186/gb-2005-6-3-r28, 1088947, 15774029.
-
(2005)
Genome Biol
, vol.6
, Issue.3
-
-
Moura, G.1
Pinheiro, M.2
Silva, R.3
Miranda, I.4
Afreixo, V.5
Dias, G.6
Freitas, A.7
Oliveira, J.L.8
Santos, M.A.9
-
36
-
-
33644862478
-
TRNA properties help shape codon pair preferences in open reading frames
-
10.1093/nar/gkj488, 1363775, 16473853
-
Buchan JR, Aucott LS, Stansfield I. tRNA properties help shape codon pair preferences in open reading frames. Nucleic Acids Research 2006, 34(3):1015. 10.1093/nar/gkj488, 1363775, 16473853.
-
(2006)
Nucleic Acids Research
, vol.34
, Issue.3
, pp. 1015
-
-
Buchan, J.R.1
Aucott, L.S.2
Stansfield, I.3
-
37
-
-
0023663908
-
Differential mRNA stability controls relative gene expression within a polycistronic operon
-
10.1016/0092-8674(87)90599-X, 2446776
-
Newbury SF, Smith NH, Higgins CF. Differential mRNA stability controls relative gene expression within a polycistronic operon. Cell 1987, 51(6):1131-1143. 10.1016/0092-8674(87)90599-X, 2446776.
-
(1987)
Cell
, vol.51
, Issue.6
, pp. 1131-1143
-
-
Newbury, S.F.1
Smith, N.H.2
Higgins, C.F.3
-
38
-
-
0023667782
-
Stabilization of translationally active mRNA by prokaryotic REP sequences
-
10.1016/0092-8674(87)90433-8, 2433046
-
Newbury SF, Smith NH, Robinson EC, Hiles ID, Higgins CF. Stabilization of translationally active mRNA by prokaryotic REP sequences. Cell 1987, 48(2):297-310. 10.1016/0092-8674(87)90433-8, 2433046.
-
(1987)
Cell
, vol.48
, Issue.2
, pp. 297-310
-
-
Newbury, S.F.1
Smith, N.H.2
Robinson, E.C.3
Hiles, I.D.4
Higgins, C.F.5
-
39
-
-
0025267840
-
Identification and comparison of stable and unstable mRNAs in Saccharomyces cerevisiae
-
360574, 2183028
-
Herrick D, Parker R, Jacobson A. Identification and comparison of stable and unstable mRNAs in Saccharomyces cerevisiae. Molecular and Cellular Biology 1990, 10(5):2269-2284. 360574, 2183028.
-
(1990)
Molecular and Cellular Biology
, vol.10
, Issue.5
, pp. 2269-2284
-
-
Herrick, D.1
Parker, R.2
Jacobson, A.3
-
40
-
-
0001374935
-
Control of mRNA stability and translation during Drosophila development
-
10.1006/scdb.1997.0179, 9642168
-
Cooperstock RL, Lipshitz HD. Control of mRNA stability and translation during Drosophila development. Semin Cell Dev Biol 1997, 8(6):541-549. 10.1006/scdb.1997.0179, 9642168.
-
(1997)
Semin Cell Dev Biol
, vol.8
, Issue.6
, pp. 541-549
-
-
Cooperstock, R.L.1
Lipshitz, H.D.2
-
41
-
-
14644398570
-
Drosophila gene tazman, an orthologue of the yeast exosome component Rrp44p/Dis3, is differentially expressed during development
-
10.1002/dvdy.20269, 15704111
-
Cairrao F, Arraiano C, Newbury S. Drosophila gene tazman, an orthologue of the yeast exosome component Rrp44p/Dis3, is differentially expressed during development. Dev Dyn 2005, 232(3):733-737. 10.1002/dvdy.20269, 15704111.
-
(2005)
Dev Dyn
, vol.232
, Issue.3
, pp. 733-737
-
-
Cairrao, F.1
Arraiano, C.2
Newbury, S.3
-
42
-
-
7444272009
-
Messenger RNA turnover in eukaryotes: pathways and enzymes
-
10.1080/10409230490513991, 15596551
-
Meyer S, Temme C, Wahle E. Messenger RNA turnover in eukaryotes: pathways and enzymes. Crit Rev Biochem Mol Biol 2004, 39(4):197-216. 10.1080/10409230490513991, 15596551.
-
(2004)
Crit Rev Biochem Mol Biol
, vol.39
, Issue.4
, pp. 197-216
-
-
Meyer, S.1
Temme, C.2
Wahle, E.3
-
43
-
-
32544459316
-
Control of mRNA stability in eukaryotes
-
10.1042/BST0340030, 16246172
-
Newbury SF. Control of mRNA stability in eukaryotes. Biochem Soc Trans 2006, 34:30-34. 10.1042/BST0340030, 16246172.
-
(2006)
Biochem Soc Trans
, vol.34
, pp. 30-34
-
-
Newbury, S.F.1
-
44
-
-
0346494858
-
DEG: a database of essential genes
-
Database, 10.1093/nar/gkh024, 308758, 14681410
-
Zhang R, Ou HY, Zhang CT. DEG: a database of essential genes. Nucleic acids research 2004, (32 Database):D271. 10.1093/nar/gkh024, 308758, 14681410.
-
(2004)
Nucleic acids research
, Issue.32
-
-
Zhang, R.1
Ou, H.Y.2
Zhang, C.T.3
-
45
-
-
0028906201
-
An estimation of minimal genome size required for life
-
10.1016/0014-5793(95)00233-Y, 7729508
-
Itaya M. An estimation of minimal genome size required for life. FEBS letters 1995, 362(3):257-260. 10.1016/0014-5793(95)00233-Y, 7729508.
-
(1995)
FEBS letters
, vol.362
, Issue.3
, pp. 257-260
-
-
Itaya, M.1
-
46
-
-
0345668475
-
Essential Bacillus subtilis genes
-
Kobayashi K, Ehrlich SD, Albertini A, Amati G, Andersen KK, Arnaud M, Asai K, Ashikaga S, Aymerich S, Bessieres P. Essential Bacillus subtilis genes. Proceedings of the National Academy of Sciences 2003, 100(8):4678-4683.
-
(2003)
Proceedings of the National Academy of Sciences
, vol.100
, Issue.8
, pp. 4678-4683
-
-
Kobayashi, K.1
Ehrlich, S.D.2
Albertini, A.3
Amati, G.4
Andersen, K.K.5
Arnaud, M.6
Asai, K.7
Ashikaga, S.8
Aymerich, S.9
Bessieres, P.10
-
47
-
-
0022504959
-
The E. coli dnaY gene encodes an arginine transfer RNA
-
10.1016/0092-8674(86)90331-4, 3516415
-
Garcia GM, Mar PK, Mullin DA, Walker JR, Prather NE. The E. coli dnaY gene encodes an arginine transfer RNA. Cell 1986, 45(3):453-459. 10.1016/0092-8674(86)90331-4, 3516415.
-
(1986)
Cell
, vol.45
, Issue.3
, pp. 453-459
-
-
Garcia, G.M.1
Mar, P.K.2
Mullin, D.A.3
Walker, J.R.4
Prather, N.E.5
-
48
-
-
0025182711
-
Frameshift suppression at tandem AGA and AGG codons by cloned tRNA genes: assigning a codon to argU tRNA and T4 tRNA (Arg)
-
10.1093/nar/18.17.5031, 332114, 2205835
-
Spanjaard RA, Chen K, Walker JR, van Duin J. Frameshift suppression at tandem AGA and AGG codons by cloned tRNA genes: assigning a codon to argU tRNA and T4 tRNA (Arg). Nucleic Acids Research 1990, 18(17):5031-5036. 10.1093/nar/18.17.5031, 332114, 2205835.
-
(1990)
Nucleic Acids Research
, vol.18
, Issue.17
, pp. 5031-5036
-
-
Spanjaard, R.A.1
Chen, K.2
Walker, J.R.3
van Duin, J.4
-
49
-
-
0024825088
-
High-level expression of recombinant genes in Escherichia coli is dependent on the availability of the dnaY gene product
-
10.1016/0378-1119(89)90470-8, 2515992
-
Brinkmann U, Mattes RE, Buckel P. High-level expression of recombinant genes in Escherichia coli is dependent on the availability of the dnaY gene product. Gene 1989, 85(1):109-114. 10.1016/0378-1119(89)90470-8, 2515992.
-
(1989)
Gene
, vol.85
, Issue.1
, pp. 109-114
-
-
Brinkmann, U.1
Mattes, R.E.2
Buckel, P.3
-
50
-
-
0000516715
-
Translation of the sequence AGG-AGG yields 50% ribosomal frameshift
-
10.1073/pnas.85.21.7967, 282334, 3186700
-
Spanjaard RA, van Duin J. Translation of the sequence AGG-AGG yields 50% ribosomal frameshift. Proceedings of the National Academy of Sciences of the United States of America 1988, 85(21):7967. 10.1073/pnas.85.21.7967, 282334, 3186700.
-
(1988)
Proceedings of the National Academy of Sciences of the United States of America
, vol.85
, Issue.21
, pp. 7967
-
-
Spanjaard, R.A.1
van Duin, J.2
-
51
-
-
0025312750
-
Codon usage tabulated from the GenBank genetic sequence data
-
331878, 2333226
-
Wada K, Aota S, Tsuchiya R, Ishibashi F, Gojobori T, Ikemura T. Codon usage tabulated from the GenBank genetic sequence data. Nucleic Acids Research 1990, 18(Suppl):2367. 331878, 2333226.
-
(1990)
Nucleic Acids Research
, vol.18
, Issue.SUPPL.
, pp. 2367
-
-
Wada, K.1
Aota, S.2
Tsuchiya, R.3
Ishibashi, F.4
Gojobori, T.5
Ikemura, T.6
-
52
-
-
0027078856
-
Novel in-frame two codon translational hop during synthesis of bovine placental lactogen in a recombinant strain of Escherichia coli
-
10.1093/nar/20.24.6707, 334590, 1480491
-
Kane JF, Violand BN, Curran DF, Staten NR, Duffin KL, Bogosian G. Novel in-frame two codon translational hop during synthesis of bovine placental lactogen in a recombinant strain of Escherichia coli. Nucleic Acids Research 1992, 20(24):6707. 10.1093/nar/20.24.6707, 334590, 1480491.
-
(1992)
Nucleic Acids Research
, vol.20
, Issue.24
, pp. 6707
-
-
Kane, J.F.1
Violand, B.N.2
Curran, D.F.3
Staten, N.R.4
Duffin, K.L.5
Bogosian, G.6
-
53
-
-
0027477087
-
Increased ribosomal accuracy increases a programmed translational frameshift in Escherichia coli
-
10.1073/pnas.90.6.2315, 46077, 8460140
-
Sipley J, Goldman E. Increased ribosomal accuracy increases a programmed translational frameshift in Escherichia coli. Proceedings of the National Academy of Sciences of the United States of America 1993, 90(6):2315. 10.1073/pnas.90.6.2315, 46077, 8460140.
-
(1993)
Proceedings of the National Academy of Sciences of the United States of America
, vol.90
, Issue.6
, pp. 2315
-
-
Sipley, J.1
Goldman, E.2
-
54
-
-
0028238578
-
Mass spectrometric analysis of human soluble catechol O-methyltransferase expressed in Escherichia coli. Identification of a product of ribosomal frameshifting and of reactive cysteines involved in S-adenosyl-L-methionine binding
-
10.1111/j.1432-1033.1994.tb18876.x, 8020475
-
Vilbois F, Caspers P, da Prada M, Lang G, Karrer C, Lahm HW, Cesura AM. Mass spectrometric analysis of human soluble catechol O-methyltransferase expressed in Escherichia coli. Identification of a product of ribosomal frameshifting and of reactive cysteines involved in S-adenosyl-L-methionine binding. Eur J Biochem 1994, 222(2):377-386. 10.1111/j.1432-1033.1994.tb18876.x, 8020475.
-
(1994)
Eur J Biochem
, vol.222
, Issue.2
, pp. 377-386
-
-
Vilbois, F.1
Caspers, P.2
da Prada, M.3
Lang, G.4
Karrer, C.5
Lahm, H.W.6
Cesura, A.M.7
-
55
-
-
0028518550
-
Importance of codon preference for production of human RAP74 and reconstitution of the RAP30/74 complex
-
10.1006/prep.1994.1067, 7827505
-
Wang BQ, Lei L, Burton ZF. Importance of codon preference for production of human RAP74 and reconstitution of the RAP30/74 complex. Protein Expr Purif 1994, 5(5):476-485. 10.1006/prep.1994.1067, 7827505.
-
(1994)
Protein Expr Purif
, vol.5
, Issue.5
, pp. 476-485
-
-
Wang, B.Q.1
Lei, L.2
Burton, Z.F.3
-
56
-
-
0028953776
-
Selection, mutations and codon usage in a bacterial model
-
10.1006/jtbi.1995.0062, 7783445
-
Bagnoli F, Liò P. Selection, mutations and codon usage in a bacterial model. Journal of Theoretical Biology 1995, 173(3):271-281. 10.1006/jtbi.1995.0062, 7783445.
-
(1995)
Journal of Theoretical Biology
, vol.173
, Issue.3
, pp. 271-281
-
-
Bagnoli, F.1
Liò, P.2
-
57
-
-
0028907431
-
Consecutive low-usage leucine codons block translation only when near the 5'end of a message in Escherichia coli
-
10.1006/jmbi.1994.0038, 7844820
-
Goldman E, Rosenberg AH, Zubay G, Studier FW. Consecutive low-usage leucine codons block translation only when near the 5'end of a message in Escherichia coli. J Mol Biol 1995, 245(5):467-473. 10.1006/jmbi.1994.0038, 7844820.
-
(1995)
J Mol Biol
, vol.245
, Issue.5
, pp. 467-473
-
-
Goldman, E.1
Rosenberg, A.H.2
Zubay, G.3
Studier, F.W.4
-
58
-
-
0028804911
-
Effects of rare codon clusters on high-level expression of heterologous proteins in Escherichia coli
-
10.1016/0958-1669(95)80082-4, 7579660
-
Kane JF. Effects of rare codon clusters on high-level expression of heterologous proteins in Escherichia coli. Curr Opin Biotechnol 1995, 6(5):494-500. 10.1016/0958-1669(95)80082-4, 7579660.
-
(1995)
Curr Opin Biotechnol
, vol.6
, Issue.5
, pp. 494-500
-
-
Kane, J.F.1
-
60
-
-
33244484877
-
No Evidence for Tissue-Specific Adaptation of Synonymous Codon Usage in Humans
-
10.1093/molbev/msj053, 16280544
-
Semon M, Lobry JR, Duret L. No Evidence for Tissue-Specific Adaptation of Synonymous Codon Usage in Humans. Molecular Biology and Evolution 2006, 23(3):523. 10.1093/molbev/msj053, 16280544.
-
(2006)
Molecular Biology and Evolution
, vol.23
, Issue.3
, pp. 523
-
-
Semon, M.1
Lobry, J.R.2
Duret, L.3
-
61
-
-
0027432923
-
Reduced synonymous substitution rate at the start of Enterobacterial genes
-
10.1093/nar/21.19.4599, 311196, 8233796
-
Eyre-Walker A, Bulmer M. Reduced synonymous substitution rate at the start of Enterobacterial genes. Nucleic Acids Research 1993, 21:4599-4603. 10.1093/nar/21.19.4599, 311196, 8233796.
-
(1993)
Nucleic Acids Research
, vol.21
, pp. 4599-4603
-
-
Eyre-Walker, A.1
Bulmer, M.2
-
62
-
-
0028106987
-
Compositional heterogeneity of the Escherichia coli genome - a role for VSP repair
-
10.1007/BF00160266, 7966364
-
Gutierrez GJ, Casadesus J, Oliver JL, Marin A. Compositional heterogeneity of the Escherichia coli genome - a role for VSP repair. Journal of Molecular Evolution 1994, 39:340-346. 10.1007/BF00160266, 7966364.
-
(1994)
Journal of Molecular Evolution
, vol.39
, pp. 340-346
-
-
Gutierrez, G.J.1
Casadesus, J.2
Oliver, J.L.3
Marin, A.4
-
63
-
-
0028220048
-
Synonymous codon usage in Drosophila melanogaster natural selection and translational accuracy
-
1205897, 8005445
-
Akashi H. Synonymous codon usage in Drosophila melanogaster natural selection and translational accuracy. Genetics 1994, 136:927-935. 1205897, 8005445.
-
(1994)
Genetics
, vol.136
, pp. 927-935
-
-
Akashi, H.1
-
64
-
-
0028584242
-
NRSUB a nonredundant database for the Bacillus subtilis genome
-
10.1093/nar/22.25.5525, 310112, 7838704
-
Perriere G, Gouy M, Gojobori T. NRSUB a nonredundant database for the Bacillus subtilis genome. Nucleic Acids Research 1994, 22:5525-5529. 10.1093/nar/22.25.5525, 310112, 7838704.
-
(1994)
Nucleic Acids Research
, vol.22
, pp. 5525-5529
-
-
Perriere, G.1
Gouy, M.2
Gojobori, T.3
-
66
-
-
0024405193
-
Codon usage determines translation rate in Escherichia coli
-
10.1016/0022-2836(89)90260-X, 2474074
-
Sorensen MA, Kurland CG, Pedersen S. Codon usage determines translation rate in Escherichia coli. J Mol Biol 1989, 207(2):365-377. 10.1016/0022-2836(89)90260-X, 2474074.
-
(1989)
J Mol Biol
, vol.207
, Issue.2
, pp. 365-377
-
-
Sorensen, M.A.1
Kurland, C.G.2
Pedersen, S.3
-
67
-
-
0034666040
-
Relationship of codon bias to mRNA concentration and protein length in Saccharomyces cerevisiae
-
10.1002/1097-0061(20000915)16:12<1131::AID-YEA609>3.0.CO;2-F, 10953085
-
Coghlan A, Wolfe KH. Relationship of codon bias to mRNA concentration and protein length in Saccharomyces cerevisiae. Yeast 2000, 16(12):1131-1145. 10.1002/1097-0061(20000915)16:12<1131::AID-YEA609>3.0.CO;2-F, 10953085.
-
(2000)
Yeast
, vol.16
, Issue.12
, pp. 1131-1145
-
-
Coghlan, A.1
Wolfe, K.H.2
|