메뉴 건너뛰기




Volumn 11, Issue , 2010, Pages

Computational identification of rare codons of Escherichia coli based on codon pairs preference

Author keywords

[No Author keywords available]

Indexed keywords

CODING SEQUENCES; COMPUTATIONAL IDENTIFICATION; CONTROL OF GENE EXPRESSION; EXPRESSION LEVELS; GENE ENGINEERING; NEGATIVE CORRELATION; RESTRICTION ENZYMES; UNDERLYING CAUSE;

EID: 77649168784     PISSN: None     EISSN: 14712105     Source Type: Journal    
DOI: 10.1186/1471-2105-11-61     Document Type: Article
Times cited : (15)

References (67)
  • 1
    • 0034821884 scopus 로고    scopus 로고
    • Codon usage and tRNA genes in eukaryotes: correlation of codon usage diversity with translation efficiency and with CG-dinucleotide usage as assessed by multivariate analysis
    • 10.1007/s002390010219, 11675589
    • Kanaya S, Yamada Y, Kinouchi M, Kudo Y, Ikemura T. Codon usage and tRNA genes in eukaryotes: correlation of codon usage diversity with translation efficiency and with CG-dinucleotide usage as assessed by multivariate analysis. Journal of molecular evolution 2001, 53(4):290-298. 10.1007/s002390010219, 11675589.
    • (2001) Journal of molecular evolution , vol.53 , Issue.4 , pp. 290-298
    • Kanaya, S.1    Yamada, Y.2    Kinouchi, M.3    Kudo, Y.4    Ikemura, T.5
  • 2
    • 0019824131 scopus 로고
    • Correlation between the abundance of Escherichia coli transfer RNAs and the occurrence of the respective codons in its protein genes: a proposal for a synonymous codon choice that is optimal for the E. coli translational system
    • 10.1016/0022-2836(81)90003-6, 6175758
    • Ikemura T. Correlation between the abundance of Escherichia coli transfer RNAs and the occurrence of the respective codons in its protein genes: a proposal for a synonymous codon choice that is optimal for the E. coli translational system. J Mol Biol 1981, 151(3):389-409. 10.1016/0022-2836(81)90003-6, 6175758.
    • (1981) J Mol Biol , vol.151 , Issue.3 , pp. 389-409
    • Ikemura, T.1
  • 3
    • 0025775913 scopus 로고
    • Correlations between the compositional properties of human genes, codon usage, and amino acid composition of proteins
    • 10.1007/BF02102652, 1908021
    • D'Onofrio G, Mouchiroud D, Aïssani B, Gautier C, Bernardi G. Correlations between the compositional properties of human genes, codon usage, and amino acid composition of proteins. Journal of Molecular Evolution 1991, 32(6):504-510. 10.1007/BF02102652, 1908021.
    • (1991) Journal of Molecular Evolution , vol.32 , Issue.6 , pp. 504-510
    • D'Onofrio, G.1    Mouchiroud, D.2    Aïssani, B.3    Gautier, C.4    Bernardi, G.5
  • 4
    • 0025625208 scopus 로고
    • Codon usage and secondary structure of mRNA
    • Zama M. Codon usage and secondary structure of mRNA. Nucleic Acids Symp Ser 1990, 22:93-94.
    • (1990) Nucleic Acids Symp Ser , vol.22 , pp. 93-94
    • Zama, M.1
  • 5
    • 0035941484 scopus 로고    scopus 로고
    • Codon bias at the 3'-side of the initiation codon is correlated with translation initiation efficiency in Escherichia coli
    • 10.1016/S0378-1119(00)00550-3, 11223267
    • Stenström CM, Jin H, Major LL, Tate WP, Isaksson LA. Codon bias at the 3'-side of the initiation codon is correlated with translation initiation efficiency in Escherichia coli. Gene 2001, 263(1-2):273-284. 10.1016/S0378-1119(00)00550-3, 11223267.
    • (2001) Gene , vol.263 , Issue.1-2 , pp. 273-284
    • Stenström, C.M.1    Jin, H.2    Major, L.L.3    Tate, W.P.4    Isaksson, L.A.5
  • 6
    • 0035220937 scopus 로고    scopus 로고
    • A simple model based on mutation and selection explains trends in codon and amino-acid usage and GC composition within and across genomes
    • Knight RD, Freeland SJ, Landweber LF. A simple model based on mutation and selection explains trends in codon and amino-acid usage and GC composition within and across genomes. Genome Biol 2001, 2(4):1-13.
    • (2001) Genome Biol , vol.2 , Issue.4 , pp. 1-13
    • Knight, R.D.1    Freeland, S.J.2    Landweber, L.F.3
  • 7
    • 0029931535 scopus 로고    scopus 로고
    • Synonymous codon bias is related to gene length in Escherichia coli: selection for translational accuracy?
    • Eyre-Walker A. Synonymous codon bias is related to gene length in Escherichia coli: selection for translational accuracy?. 1996, 13(6):864-872.
    • (1996) , vol.13 , Issue.6 , pp. 864-872
    • Eyre-Walker, A.1
  • 8
    • 0032190244 scopus 로고    scopus 로고
    • Gene length and codon usage bias in Drosophila melanogaster, Saccharomyces cervisiae and Escherichia coli
    • 10.1093/nar/26.19.4540, 147868, 9841348
    • Marín A, González F, Gutiérrez G, Oliver JL. Gene length and codon usage bias in Drosophila melanogaster, Saccharomyces cervisiae and Escherichia coli. Nucleic Acids Research 1998, 26(19):4540. 10.1093/nar/26.19.4540, 147868, 9841348.
    • (1998) Nucleic Acids Research , vol.26 , Issue.19 , pp. 4540
    • Marín, A.1    González, F.2    Gutiérrez, G.3    Oliver, J.L.4
  • 9
    • 0031697801 scopus 로고    scopus 로고
    • The relationship between synonymous codon usage and protein structure
    • 10.1016/S0014-5793(98)00955-7, 9738458
    • Tao X, Dafu D. The relationship between synonymous codon usage and protein structure. FEBS Letters 1998, 434(1-2):93-96. 10.1016/S0014-5793(98)00955-7, 9738458.
    • (1998) FEBS Letters , vol.434 , Issue.1-2 , pp. 93-96
    • Tao, X.1    Dafu, D.2
  • 10
    • 34548398528 scopus 로고    scopus 로고
    • Expression and purification of ancrod, an anticoagulant drug, in Pichia pastoris
    • 10.1016/j.pep.2007.07.002, 17707656
    • Yu X, Li Z, Xia X, Fang H, Zhou C, Chen H. Expression and purification of ancrod, an anticoagulant drug, in Pichia pastoris. Protein Expression and Purification 2007, 55(2):257-261. 10.1016/j.pep.2007.07.002, 17707656.
    • (2007) Protein Expression and Purification , vol.55 , Issue.2 , pp. 257-261
    • Yu, X.1    Li, Z.2    Xia, X.3    Fang, H.4    Zhou, C.5    Chen, H.6
  • 11
    • 34249684877 scopus 로고    scopus 로고
    • Codon usage bias in Chlamydia trachomatis and the effect of codon modification in the MOMP gene on immune responses to vaccination
    • 10.1139/O06-211, 17534403
    • Zhao WM, Wang H, Zhou YB, Luan Y, Qi M, Zheng Y, Cheng YZ, Tang W, Liu J, Yu H. Codon usage bias in Chlamydia trachomatis and the effect of codon modification in the MOMP gene on immune responses to vaccination. Biochemistry and Cell Biology 2007, 85(2):218-226. 10.1139/O06-211, 17534403.
    • (2007) Biochemistry and Cell Biology , vol.85 , Issue.2 , pp. 218-226
    • Zhao, W.M.1    Wang, H.2    Zhou, Y.B.3    Luan, Y.4    Qi, M.5    Zheng, Y.6    Cheng, Y.Z.7    Tang, W.8    Liu, J.9    Yu, H.10
  • 12
    • 34248396315 scopus 로고    scopus 로고
    • Characterization of a thermostable cyclodextrin glucanotransferase from Pyrococcus furiosus DSM3638
    • 10.1007/s00792-007-0061-6, 17308866
    • Lee MH, Yang SJ, Kim JW, Lee HS, Kim JW, Park KH. Characterization of a thermostable cyclodextrin glucanotransferase from Pyrococcus furiosus DSM3638. Extremophiles 2007, 11(3):537-541. 10.1007/s00792-007-0061-6, 17308866.
    • (2007) Extremophiles , vol.11 , Issue.3 , pp. 537-541
    • Lee, M.H.1    Yang, S.J.2    Kim, J.W.3    Lee, H.S.4    Kim, J.W.5    Park, K.H.6
  • 13
    • 44349180884 scopus 로고    scopus 로고
    • Genome Evolution and the Emergence of Fruiting Body Development in Myxococcus xanthus
    • Goldman B, Bhat S, Shimkets LJ. Genome Evolution and the Emergence of Fruiting Body Development in Myxococcus xanthus. PLoS ONE 2007, 2(12).
    • (2007) PLoS ONE , vol.2 , Issue.12
    • Goldman, B.1    Bhat, S.2    Shimkets, L.J.3
  • 14
    • 34548844475 scopus 로고    scopus 로고
    • Analysis of structure, function, and evolutionary origin of the ob gene product--leptin
    • Ravishankar Ram M, Beena G, Ragunathan P, Malathi R. Analysis of structure, function, and evolutionary origin of the ob gene product--leptin. J Biomol Struct Dyn 2007, 25(2):183-188.
    • (2007) J Biomol Struct Dyn , vol.25 , Issue.2 , pp. 183-188
    • Ravishankar Ram, M.1    Beena, G.2    Ragunathan, P.3    Malathi, R.4
  • 15
    • 0019949369 scopus 로고
    • Correlation between the abundance of yeast transfer RNAs and the occurrence of the respective codons in protein genes
    • Ikemura T. Correlation between the abundance of yeast transfer RNAs and the occurrence of the respective codons in protein genes. J MolBiol 1982, 158(4):573-579.
    • (1982) J MolBiol , vol.158 , Issue.4 , pp. 573-579
    • Ikemura, T.1
  • 16
    • 0021958933 scopus 로고
    • Codon usage and tRNA content in unicellular and multicellular organisms
    • Ikemura T. Codon usage and tRNA content in unicellular and multicellular organisms. Mol Biol Evol 1985, 2(1):13-34.
    • (1985) Mol Biol Evol , vol.2 , Issue.1 , pp. 13-34
    • Ikemura, T.1
  • 17
    • 0030731696 scopus 로고    scopus 로고
    • Codon Usage Bias and tRNA Abundance in Drosophila
    • 10.1007/PL00006256, 9342399
    • Moriyama EN. Codon Usage Bias and tRNA Abundance in Drosophila. Journal of Molecular Evolution 1997, 45(5):514-523. 10.1007/PL00006256, 9342399.
    • (1997) Journal of Molecular Evolution , vol.45 , Issue.5 , pp. 514-523
    • Moriyama, E.N.1
  • 18
    • 0034237669 scopus 로고    scopus 로고
    • TRNA gene number and codon usage in the C. elegans genome are co-adapted for optimal translation of highly expressed genes
    • 10.1016/S0168-9525(00)02041-2, 10858656
    • Duret L. tRNA gene number and codon usage in the C. elegans genome are co-adapted for optimal translation of highly expressed genes. Trends in Genetics 2000, 16(7):287-289. 10.1016/S0168-9525(00)02041-2, 10858656.
    • (2000) Trends in Genetics , vol.16 , Issue.7 , pp. 287-289
    • Duret, L.1
  • 19
    • 0344237338 scopus 로고    scopus 로고
    • Unexpected correlations between gene expression and codon usage bias from microarray data for the whole Escherichia coli K-12 genome
    • 10.1093/nar/gkg897, 290265, 14627830
    • Dos Reis M, Wernisch L, Savva R, Journals O. Unexpected correlations between gene expression and codon usage bias from microarray data for the whole Escherichia coli K-12 genome. Nucleic Acids Research 2003, 31(23):6976-6985. 10.1093/nar/gkg897, 290265, 14627830.
    • (2003) Nucleic Acids Research , vol.31 , Issue.23 , pp. 6976-6985
    • Dos Reis, M.1    Wernisch, L.2    Savva, R.3    Journals, O.4
  • 20
    • 0142092546 scopus 로고    scopus 로고
    • The signature of selection mediated by expression on human genes
    • 10.1101/gr.641103, 403694, 12975314
    • Urrutia AO, Hurst LD. The signature of selection mediated by expression on human genes. Genome Res 2003, 13(10):2260-2264. 10.1101/gr.641103, 403694, 12975314.
    • (2003) Genome Res , vol.13 , Issue.10 , pp. 2260-2264
    • Urrutia, A.O.1    Hurst, L.D.2
  • 21
    • 13444291526 scopus 로고    scopus 로고
    • Codon bias as a factor in regulating expression via translation rate in the human genome
    • 10.1016/j.gene.2004.11.035, 15716084
    • Lavner Y, Kotlar D. Codon bias as a factor in regulating expression via translation rate in the human genome. Gene 2004, 345(1):127-38. 10.1016/j.gene.2004.11.035, 15716084.
    • (2004) Gene , vol.345 , Issue.1 , pp. 127-138
    • Lavner, Y.1    Kotlar, D.2
  • 22
    • 37049036395 scopus 로고    scopus 로고
    • On the origin of synonymous codon usage divergence between thermophilic and mesophilic prokaryotes
    • 10.1016/j.febslet.2007.11.054, 18047839
    • Basak S, Roy S, Ghosh TC. On the origin of synonymous codon usage divergence between thermophilic and mesophilic prokaryotes. FEBS Letters 2007, 581(30):5825-30. 10.1016/j.febslet.2007.11.054, 18047839.
    • (2007) FEBS Letters , vol.581 , Issue.30 , pp. 5825-5830
    • Basak, S.1    Roy, S.2    Ghosh, T.C.3
  • 24
    • 36049005257 scopus 로고    scopus 로고
    • Cytosine deamination and selection of CpG suppressed clones are the two major independent biological forces that shape codon usage bias in coronaviruses
    • 10.1016/j.virol.2007.08.010, 17881030
    • Woo PCY, Wong BHL, Huang Y, Lau SKP, Yuen KY. Cytosine deamination and selection of CpG suppressed clones are the two major independent biological forces that shape codon usage bias in coronaviruses. Virology 2007, 369(2):431-442. 10.1016/j.virol.2007.08.010, 17881030.
    • (2007) Virology , vol.369 , Issue.2 , pp. 431-442
    • Woo, P.C.Y.1    Wong, B.H.L.2    Huang, Y.3    Lau, S.K.P.4    Yuen, K.Y.5
  • 25
    • 34247600158 scopus 로고    scopus 로고
    • Unusual Codon Bias in Vinyl Chloride Reductase Genes of Dehalococcoides Species
    • 10.1128/AEM.02768-06, 1855607, 17308190
    • McMurdie PJ, Behrens SF, Holmes S, Spormann AM. Unusual Codon Bias in Vinyl Chloride Reductase Genes of Dehalococcoides Species. Applied and Environmental Microbiology 2007, 73(8):2744-2747. 10.1128/AEM.02768-06, 1855607, 17308190.
    • (2007) Applied and Environmental Microbiology , vol.73 , Issue.8 , pp. 2744-2747
    • McMurdie, P.J.1    Behrens, S.F.2    Holmes, S.3    Spormann, A.M.4
  • 26
    • 34248184632 scopus 로고    scopus 로고
    • Rapid divergence of codon usage patterns within the rice genome
    • Wang HC, Hickey DA. Rapid divergence of codon usage patterns within the rice genome. BMC Evol Biol 8;7(Suppl 1):S6.
    • BMC Evol Biol , vol.7-8 , Issue.SUPPL. 1
    • Wang, H.C.1    Hickey, D.A.2
  • 27
    • 0023650543 scopus 로고
    • The codon adaptation index-a measure of directional synonymous codon usage bias, and its potential applications
    • 10.1093/nar/15.3.1281, 340524, 3547335
    • Sharp PM, Li WH. The codon adaptation index-a measure of directional synonymous codon usage bias, and its potential applications. Nucleic Acids Res 1987, 15(3):1281-1295. 10.1093/nar/15.3.1281, 340524, 3547335.
    • (1987) Nucleic Acids Res , vol.15 , Issue.3 , pp. 1281-1295
    • Sharp, P.M.1    Li, W.H.2
  • 29
    • 0024977865 scopus 로고
    • Codon usage in plant genes
    • 10.1093/nar/17.2.477, 331598, 2644621
    • Murray EE, Lotzer J, Eberle M. Codon usage in plant genes. Nucleic Acids Research 1989, 17(2):477. 10.1093/nar/17.2.477, 331598, 2644621.
    • (1989) Nucleic Acids Research , vol.17 , Issue.2 , pp. 477
    • Murray, E.E.1    Lotzer, J.2    Eberle, M.3
  • 30
    • 0022405085 scopus 로고
    • Sense codons are found in specific contexts
    • 10.1016/0022-2836(85)90239-6, 3892014
    • Yarus M, Folley LS. Sense codons are found in specific contexts. J Mol Biol 1985, 182(4):529-540. 10.1016/0022-2836(85)90239-6, 3892014.
    • (1985) J Mol Biol , vol.182 , Issue.4 , pp. 529-540
    • Yarus, M.1    Folley, L.S.2
  • 31
    • 0024673103 scopus 로고
    • Nonrandom utilization of codon pairs in Escherichia coli
    • Gutman GA, Hatfield GW. Nonrandom utilization of codon pairs in Escherichia coli. Proc Natl Acad Sci US A 1989, 86(10):3699-3703.
    • (1989) Proc Natl Acad Sci US A , vol.86 , Issue.10 , pp. 3699-3703
    • Gutman, G.A.1    Hatfield, G.W.2
  • 32
    • 0024427630 scopus 로고
    • Codon contexts from weakly expressed genes reduce expression in vivo
    • 10.1016/0022-2836(89)90003-X, 2511323
    • Folley LS, Yarus M. Codon contexts from weakly expressed genes reduce expression in vivo. J Mol Biol 1989, 209(3):359-378. 10.1016/0022-2836(89)90003-X, 2511323.
    • (1989) J Mol Biol , vol.209 , Issue.3 , pp. 359-378
    • Folley, L.S.1    Yarus, M.2
  • 33
    • 0029162727 scopus 로고
    • Codon Pair Utilization Biases Influence Translational Elongation Step Times
    • 10.1074/jbc.270.39.22801, 7559409
    • Irwin B, Heck JD, Hatfield G. Codon Pair Utilization Biases Influence Translational Elongation Step Times. Journal of Biological Chemistry 1995, 270(39):22801. 10.1074/jbc.270.39.22801, 7559409.
    • (1995) Journal of Biological Chemistry , vol.270 , Issue.39 , pp. 22801
    • Irwin, B.1    Heck, J.D.2    Hatfield, G.3
  • 34
    • 0038620436 scopus 로고    scopus 로고
    • Codon pairs in the genome of Escherichia coli
    • 10.1093/bioinformatics/btg082, 12761062
    • Boycheva S, Chkodrov G, Ivanov I. Codon pairs in the genome of Escherichia coli. Bioinformatics 2003, 19(8):987-998. 10.1093/bioinformatics/btg082, 12761062.
    • (2003) Bioinformatics , vol.19 , Issue.8 , pp. 987-998
    • Boycheva, S.1    Chkodrov, G.2    Ivanov, I.3
  • 36
    • 33644862478 scopus 로고    scopus 로고
    • TRNA properties help shape codon pair preferences in open reading frames
    • 10.1093/nar/gkj488, 1363775, 16473853
    • Buchan JR, Aucott LS, Stansfield I. tRNA properties help shape codon pair preferences in open reading frames. Nucleic Acids Research 2006, 34(3):1015. 10.1093/nar/gkj488, 1363775, 16473853.
    • (2006) Nucleic Acids Research , vol.34 , Issue.3 , pp. 1015
    • Buchan, J.R.1    Aucott, L.S.2    Stansfield, I.3
  • 37
    • 0023663908 scopus 로고
    • Differential mRNA stability controls relative gene expression within a polycistronic operon
    • 10.1016/0092-8674(87)90599-X, 2446776
    • Newbury SF, Smith NH, Higgins CF. Differential mRNA stability controls relative gene expression within a polycistronic operon. Cell 1987, 51(6):1131-1143. 10.1016/0092-8674(87)90599-X, 2446776.
    • (1987) Cell , vol.51 , Issue.6 , pp. 1131-1143
    • Newbury, S.F.1    Smith, N.H.2    Higgins, C.F.3
  • 38
    • 0023667782 scopus 로고
    • Stabilization of translationally active mRNA by prokaryotic REP sequences
    • 10.1016/0092-8674(87)90433-8, 2433046
    • Newbury SF, Smith NH, Robinson EC, Hiles ID, Higgins CF. Stabilization of translationally active mRNA by prokaryotic REP sequences. Cell 1987, 48(2):297-310. 10.1016/0092-8674(87)90433-8, 2433046.
    • (1987) Cell , vol.48 , Issue.2 , pp. 297-310
    • Newbury, S.F.1    Smith, N.H.2    Robinson, E.C.3    Hiles, I.D.4    Higgins, C.F.5
  • 39
    • 0025267840 scopus 로고
    • Identification and comparison of stable and unstable mRNAs in Saccharomyces cerevisiae
    • 360574, 2183028
    • Herrick D, Parker R, Jacobson A. Identification and comparison of stable and unstable mRNAs in Saccharomyces cerevisiae. Molecular and Cellular Biology 1990, 10(5):2269-2284. 360574, 2183028.
    • (1990) Molecular and Cellular Biology , vol.10 , Issue.5 , pp. 2269-2284
    • Herrick, D.1    Parker, R.2    Jacobson, A.3
  • 40
    • 0001374935 scopus 로고    scopus 로고
    • Control of mRNA stability and translation during Drosophila development
    • 10.1006/scdb.1997.0179, 9642168
    • Cooperstock RL, Lipshitz HD. Control of mRNA stability and translation during Drosophila development. Semin Cell Dev Biol 1997, 8(6):541-549. 10.1006/scdb.1997.0179, 9642168.
    • (1997) Semin Cell Dev Biol , vol.8 , Issue.6 , pp. 541-549
    • Cooperstock, R.L.1    Lipshitz, H.D.2
  • 41
    • 14644398570 scopus 로고    scopus 로고
    • Drosophila gene tazman, an orthologue of the yeast exosome component Rrp44p/Dis3, is differentially expressed during development
    • 10.1002/dvdy.20269, 15704111
    • Cairrao F, Arraiano C, Newbury S. Drosophila gene tazman, an orthologue of the yeast exosome component Rrp44p/Dis3, is differentially expressed during development. Dev Dyn 2005, 232(3):733-737. 10.1002/dvdy.20269, 15704111.
    • (2005) Dev Dyn , vol.232 , Issue.3 , pp. 733-737
    • Cairrao, F.1    Arraiano, C.2    Newbury, S.3
  • 42
    • 7444272009 scopus 로고    scopus 로고
    • Messenger RNA turnover in eukaryotes: pathways and enzymes
    • 10.1080/10409230490513991, 15596551
    • Meyer S, Temme C, Wahle E. Messenger RNA turnover in eukaryotes: pathways and enzymes. Crit Rev Biochem Mol Biol 2004, 39(4):197-216. 10.1080/10409230490513991, 15596551.
    • (2004) Crit Rev Biochem Mol Biol , vol.39 , Issue.4 , pp. 197-216
    • Meyer, S.1    Temme, C.2    Wahle, E.3
  • 43
    • 32544459316 scopus 로고    scopus 로고
    • Control of mRNA stability in eukaryotes
    • 10.1042/BST0340030, 16246172
    • Newbury SF. Control of mRNA stability in eukaryotes. Biochem Soc Trans 2006, 34:30-34. 10.1042/BST0340030, 16246172.
    • (2006) Biochem Soc Trans , vol.34 , pp. 30-34
    • Newbury, S.F.1
  • 44
    • 0346494858 scopus 로고    scopus 로고
    • DEG: a database of essential genes
    • Database, 10.1093/nar/gkh024, 308758, 14681410
    • Zhang R, Ou HY, Zhang CT. DEG: a database of essential genes. Nucleic acids research 2004, (32 Database):D271. 10.1093/nar/gkh024, 308758, 14681410.
    • (2004) Nucleic acids research , Issue.32
    • Zhang, R.1    Ou, H.Y.2    Zhang, C.T.3
  • 45
    • 0028906201 scopus 로고
    • An estimation of minimal genome size required for life
    • 10.1016/0014-5793(95)00233-Y, 7729508
    • Itaya M. An estimation of minimal genome size required for life. FEBS letters 1995, 362(3):257-260. 10.1016/0014-5793(95)00233-Y, 7729508.
    • (1995) FEBS letters , vol.362 , Issue.3 , pp. 257-260
    • Itaya, M.1
  • 47
    • 0022504959 scopus 로고
    • The E. coli dnaY gene encodes an arginine transfer RNA
    • 10.1016/0092-8674(86)90331-4, 3516415
    • Garcia GM, Mar PK, Mullin DA, Walker JR, Prather NE. The E. coli dnaY gene encodes an arginine transfer RNA. Cell 1986, 45(3):453-459. 10.1016/0092-8674(86)90331-4, 3516415.
    • (1986) Cell , vol.45 , Issue.3 , pp. 453-459
    • Garcia, G.M.1    Mar, P.K.2    Mullin, D.A.3    Walker, J.R.4    Prather, N.E.5
  • 48
    • 0025182711 scopus 로고
    • Frameshift suppression at tandem AGA and AGG codons by cloned tRNA genes: assigning a codon to argU tRNA and T4 tRNA (Arg)
    • 10.1093/nar/18.17.5031, 332114, 2205835
    • Spanjaard RA, Chen K, Walker JR, van Duin J. Frameshift suppression at tandem AGA and AGG codons by cloned tRNA genes: assigning a codon to argU tRNA and T4 tRNA (Arg). Nucleic Acids Research 1990, 18(17):5031-5036. 10.1093/nar/18.17.5031, 332114, 2205835.
    • (1990) Nucleic Acids Research , vol.18 , Issue.17 , pp. 5031-5036
    • Spanjaard, R.A.1    Chen, K.2    Walker, J.R.3    van Duin, J.4
  • 49
    • 0024825088 scopus 로고
    • High-level expression of recombinant genes in Escherichia coli is dependent on the availability of the dnaY gene product
    • 10.1016/0378-1119(89)90470-8, 2515992
    • Brinkmann U, Mattes RE, Buckel P. High-level expression of recombinant genes in Escherichia coli is dependent on the availability of the dnaY gene product. Gene 1989, 85(1):109-114. 10.1016/0378-1119(89)90470-8, 2515992.
    • (1989) Gene , vol.85 , Issue.1 , pp. 109-114
    • Brinkmann, U.1    Mattes, R.E.2    Buckel, P.3
  • 52
    • 0027078856 scopus 로고
    • Novel in-frame two codon translational hop during synthesis of bovine placental lactogen in a recombinant strain of Escherichia coli
    • 10.1093/nar/20.24.6707, 334590, 1480491
    • Kane JF, Violand BN, Curran DF, Staten NR, Duffin KL, Bogosian G. Novel in-frame two codon translational hop during synthesis of bovine placental lactogen in a recombinant strain of Escherichia coli. Nucleic Acids Research 1992, 20(24):6707. 10.1093/nar/20.24.6707, 334590, 1480491.
    • (1992) Nucleic Acids Research , vol.20 , Issue.24 , pp. 6707
    • Kane, J.F.1    Violand, B.N.2    Curran, D.F.3    Staten, N.R.4    Duffin, K.L.5    Bogosian, G.6
  • 53
    • 0027477087 scopus 로고
    • Increased ribosomal accuracy increases a programmed translational frameshift in Escherichia coli
    • 10.1073/pnas.90.6.2315, 46077, 8460140
    • Sipley J, Goldman E. Increased ribosomal accuracy increases a programmed translational frameshift in Escherichia coli. Proceedings of the National Academy of Sciences of the United States of America 1993, 90(6):2315. 10.1073/pnas.90.6.2315, 46077, 8460140.
    • (1993) Proceedings of the National Academy of Sciences of the United States of America , vol.90 , Issue.6 , pp. 2315
    • Sipley, J.1    Goldman, E.2
  • 54
    • 0028238578 scopus 로고
    • Mass spectrometric analysis of human soluble catechol O-methyltransferase expressed in Escherichia coli. Identification of a product of ribosomal frameshifting and of reactive cysteines involved in S-adenosyl-L-methionine binding
    • 10.1111/j.1432-1033.1994.tb18876.x, 8020475
    • Vilbois F, Caspers P, da Prada M, Lang G, Karrer C, Lahm HW, Cesura AM. Mass spectrometric analysis of human soluble catechol O-methyltransferase expressed in Escherichia coli. Identification of a product of ribosomal frameshifting and of reactive cysteines involved in S-adenosyl-L-methionine binding. Eur J Biochem 1994, 222(2):377-386. 10.1111/j.1432-1033.1994.tb18876.x, 8020475.
    • (1994) Eur J Biochem , vol.222 , Issue.2 , pp. 377-386
    • Vilbois, F.1    Caspers, P.2    da Prada, M.3    Lang, G.4    Karrer, C.5    Lahm, H.W.6    Cesura, A.M.7
  • 55
    • 0028518550 scopus 로고
    • Importance of codon preference for production of human RAP74 and reconstitution of the RAP30/74 complex
    • 10.1006/prep.1994.1067, 7827505
    • Wang BQ, Lei L, Burton ZF. Importance of codon preference for production of human RAP74 and reconstitution of the RAP30/74 complex. Protein Expr Purif 1994, 5(5):476-485. 10.1006/prep.1994.1067, 7827505.
    • (1994) Protein Expr Purif , vol.5 , Issue.5 , pp. 476-485
    • Wang, B.Q.1    Lei, L.2    Burton, Z.F.3
  • 56
    • 0028953776 scopus 로고
    • Selection, mutations and codon usage in a bacterial model
    • 10.1006/jtbi.1995.0062, 7783445
    • Bagnoli F, Liò P. Selection, mutations and codon usage in a bacterial model. Journal of Theoretical Biology 1995, 173(3):271-281. 10.1006/jtbi.1995.0062, 7783445.
    • (1995) Journal of Theoretical Biology , vol.173 , Issue.3 , pp. 271-281
    • Bagnoli, F.1    Liò, P.2
  • 57
    • 0028907431 scopus 로고
    • Consecutive low-usage leucine codons block translation only when near the 5'end of a message in Escherichia coli
    • 10.1006/jmbi.1994.0038, 7844820
    • Goldman E, Rosenberg AH, Zubay G, Studier FW. Consecutive low-usage leucine codons block translation only when near the 5'end of a message in Escherichia coli. J Mol Biol 1995, 245(5):467-473. 10.1006/jmbi.1994.0038, 7844820.
    • (1995) J Mol Biol , vol.245 , Issue.5 , pp. 467-473
    • Goldman, E.1    Rosenberg, A.H.2    Zubay, G.3    Studier, F.W.4
  • 58
    • 0028804911 scopus 로고
    • Effects of rare codon clusters on high-level expression of heterologous proteins in Escherichia coli
    • 10.1016/0958-1669(95)80082-4, 7579660
    • Kane JF. Effects of rare codon clusters on high-level expression of heterologous proteins in Escherichia coli. Curr Opin Biotechnol 1995, 6(5):494-500. 10.1016/0958-1669(95)80082-4, 7579660.
    • (1995) Curr Opin Biotechnol , vol.6 , Issue.5 , pp. 494-500
    • Kane, J.F.1
  • 60
    • 33244484877 scopus 로고    scopus 로고
    • No Evidence for Tissue-Specific Adaptation of Synonymous Codon Usage in Humans
    • 10.1093/molbev/msj053, 16280544
    • Semon M, Lobry JR, Duret L. No Evidence for Tissue-Specific Adaptation of Synonymous Codon Usage in Humans. Molecular Biology and Evolution 2006, 23(3):523. 10.1093/molbev/msj053, 16280544.
    • (2006) Molecular Biology and Evolution , vol.23 , Issue.3 , pp. 523
    • Semon, M.1    Lobry, J.R.2    Duret, L.3
  • 61
    • 0027432923 scopus 로고
    • Reduced synonymous substitution rate at the start of Enterobacterial genes
    • 10.1093/nar/21.19.4599, 311196, 8233796
    • Eyre-Walker A, Bulmer M. Reduced synonymous substitution rate at the start of Enterobacterial genes. Nucleic Acids Research 1993, 21:4599-4603. 10.1093/nar/21.19.4599, 311196, 8233796.
    • (1993) Nucleic Acids Research , vol.21 , pp. 4599-4603
    • Eyre-Walker, A.1    Bulmer, M.2
  • 62
    • 0028106987 scopus 로고
    • Compositional heterogeneity of the Escherichia coli genome - a role for VSP repair
    • 10.1007/BF00160266, 7966364
    • Gutierrez GJ, Casadesus J, Oliver JL, Marin A. Compositional heterogeneity of the Escherichia coli genome - a role for VSP repair. Journal of Molecular Evolution 1994, 39:340-346. 10.1007/BF00160266, 7966364.
    • (1994) Journal of Molecular Evolution , vol.39 , pp. 340-346
    • Gutierrez, G.J.1    Casadesus, J.2    Oliver, J.L.3    Marin, A.4
  • 63
    • 0028220048 scopus 로고
    • Synonymous codon usage in Drosophila melanogaster natural selection and translational accuracy
    • 1205897, 8005445
    • Akashi H. Synonymous codon usage in Drosophila melanogaster natural selection and translational accuracy. Genetics 1994, 136:927-935. 1205897, 8005445.
    • (1994) Genetics , vol.136 , pp. 927-935
    • Akashi, H.1
  • 64
    • 0028584242 scopus 로고
    • NRSUB a nonredundant database for the Bacillus subtilis genome
    • 10.1093/nar/22.25.5525, 310112, 7838704
    • Perriere G, Gouy M, Gojobori T. NRSUB a nonredundant database for the Bacillus subtilis genome. Nucleic Acids Research 1994, 22:5525-5529. 10.1093/nar/22.25.5525, 310112, 7838704.
    • (1994) Nucleic Acids Research , vol.22 , pp. 5525-5529
    • Perriere, G.1    Gouy, M.2    Gojobori, T.3
  • 66
    • 0024405193 scopus 로고
    • Codon usage determines translation rate in Escherichia coli
    • 10.1016/0022-2836(89)90260-X, 2474074
    • Sorensen MA, Kurland CG, Pedersen S. Codon usage determines translation rate in Escherichia coli. J Mol Biol 1989, 207(2):365-377. 10.1016/0022-2836(89)90260-X, 2474074.
    • (1989) J Mol Biol , vol.207 , Issue.2 , pp. 365-377
    • Sorensen, M.A.1    Kurland, C.G.2    Pedersen, S.3
  • 67
    • 0034666040 scopus 로고    scopus 로고
    • Relationship of codon bias to mRNA concentration and protein length in Saccharomyces cerevisiae
    • 10.1002/1097-0061(20000915)16:12<1131::AID-YEA609>3.0.CO;2-F, 10953085
    • Coghlan A, Wolfe KH. Relationship of codon bias to mRNA concentration and protein length in Saccharomyces cerevisiae. Yeast 2000, 16(12):1131-1145. 10.1002/1097-0061(20000915)16:12<1131::AID-YEA609>3.0.CO;2-F, 10953085.
    • (2000) Yeast , vol.16 , Issue.12 , pp. 1131-1145
    • Coghlan, A.1    Wolfe, K.H.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.