-
2
-
-
25144458667
-
A new progressive-iterative algorithm for multiple structure alignment
-
10.1093/bioinformatics/bti527, 15941743
-
Lupyan D, Leo-Macias A, Ortiz AR. A new progressive-iterative algorithm for multiple structure alignment. Bioinformatics 2005, 21:3255-3263. 10.1093/bioinformatics/bti527, 15941743.
-
(2005)
Bioinformatics
, vol.21
, pp. 3255-3263
-
-
Lupyan, D.1
Leo-Macias, A.2
Ortiz, A.R.3
-
3
-
-
38949150854
-
Matt: Local Flexibility Aids Protein Multiple Structure Alignment
-
Menke M, Berger B, Cowen L. Matt: Local Flexibility Aids Protein Multiple Structure Alignment. PLoS Computational Biology 2008, 4:0088-0099.
-
(2008)
PLoS Computational Biology
, vol.4
, pp. 88-99
-
-
Menke, M.1
Berger, B.2
Cowen, L.3
-
4
-
-
0033954256
-
The Protein Data Bank
-
10.1093/nar/28.1.235, 102472, 10592235
-
Berman HM, Westbrook J, Feng Z, Gilliland G, Bhat TN, Weissig H, Shindyalov IN, Bourne PE. The Protein Data Bank. Nucleic Acids Research 2000, 28:235-242. 10.1093/nar/28.1.235, 102472, 10592235.
-
(2000)
Nucleic Acids Research
, vol.28
, pp. 235-242
-
-
Berman, H.M.1
Westbrook, J.2
Feng, Z.3
Gilliland, G.4
Bhat, T.N.5
Weissig, H.6
Shindyalov, I.N.7
Bourne, P.E.8
-
5
-
-
8444245971
-
Approximate multiple protein structure alignment using the Sum-of-Pairs distance
-
10.1089/cmb.2004.11.986, 15700413
-
Ye J, Janardan R. Approximate multiple protein structure alignment using the Sum-of-Pairs distance. Journal of Computational Biology 2004, 11(5):986-1000. 10.1089/cmb.2004.11.986, 15700413.
-
(2004)
Journal of Computational Biology
, vol.11
, Issue.5
, pp. 986-1000
-
-
Ye, J.1
Janardan, R.2
-
7
-
-
10944222215
-
Pairwise protein structure alignment based on an orientation-independent backbone representation
-
10.1142/S021972000400082X, 15617162
-
Ye J, Janardan R, Liu S. Pairwise protein structure alignment based on an orientation-independent backbone representation. Journal of Bioinformatics and Computational Biology 2004, 2(4):699-717. 10.1142/S021972000400082X, 15617162.
-
(2004)
Journal of Bioinformatics and Computational Biology
, vol.2
, Issue.4
, pp. 699-717
-
-
Ye, J.1
Janardan, R.2
Liu, S.3
-
8
-
-
65449188232
-
Jalview Version 2 - a multiple sequence alignment editor and analysis workbench
-
10.1093/bioinformatics/btp033, 2672624, 19151095
-
Waterhouse AM, Procter JB, A MDM, M C, Barton GJ. Jalview Version 2 - a multiple sequence alignment editor and analysis workbench. Bioinformatics 2009, 25(9):1189-1191. 10.1093/bioinformatics/btp033, 2672624, 19151095.
-
(2009)
Bioinformatics
, vol.25
, Issue.9
, pp. 1189-1191
-
-
Waterhouse, A.M.1
Procter, J.B.2
A, M.D.M.3
M, C.4
Barton, G.J.5
-
9
-
-
84888283849
-
Chemis3D: Molecular Viewer Applet
-
Chemis3D: Molecular Viewer Applet. , http://chemis.free.fr/mol3d/
-
-
-
-
10
-
-
0031766401
-
HOMSTRAD: a database of protein structure alignments for homologous families
-
10.1002/pro.5560071126, 2143859, 9828015
-
Mizuguchi K, Deane CM, Blundell TL, Overington JP. HOMSTRAD: a database of protein structure alignments for homologous families. Protein Science 1998, 7:2469-2471. 10.1002/pro.5560071126, 2143859, 9828015.
-
(1998)
Protein Science
, vol.7
, pp. 2469-2471
-
-
Mizuguchi, K.1
Deane, C.M.2
Blundell, T.L.3
Overington, J.P.4
-
11
-
-
16344394781
-
SABmark - A benchmark for sequence alignment that covers the entire known fold space
-
10.1093/bioinformatics/bth493, 15333456
-
VanWalle I, Lasters I, Wyns L. SABmark - A benchmark for sequence alignment that covers the entire known fold space. Bioinformatics 2005, 21:1267-1268. 10.1093/bioinformatics/bth493, 15333456.
-
(2005)
Bioinformatics
, vol.21
, pp. 1267-1268
-
-
VanWalle, I.1
Lasters, I.2
Wyns, L.3
-
12
-
-
77249126602
-
Alignment of multiple protein structures based on sequence and structure features
-
Madhusudhanm MS, Webb BM, Marti-Renom MA, Eswar N, Sali A. Alignment of multiple protein structures based on sequence and structure features. Protein Engineering, Design & Selection 2009, 22(9):569-574.
-
(2009)
Protein Engineering, Design & Selection
, vol.22
, Issue.9
, pp. 569-574
-
-
Madhusudhanm, M.S.1
Webb, B.M.2
Marti-Renom, M.A.3
Eswar, N.4
Sali, A.5
-
13
-
-
0035748996
-
Comparison of performance in successive CASP experiments
-
S
-
Venclovas C, Zemla A, Fidelis K, Moult J. Comparison of performance in successive CASP experiments. Proteins 2001, 45(S5):163-170.
-
(2001)
Proteins
, vol.45
, Issue.5
, pp. 163-170
-
-
Venclovas, C.1
Zemla, A.2
Fidelis, K.3
Moult, J.4
-
14
-
-
0027440362
-
Protein Structure Comparison by Alignment of Distance Matrices
-
10.1006/jmbi.1993.1489, 8377180
-
Holm L, Sander C. Protein Structure Comparison by Alignment of Distance Matrices. Journal of Molecular Biology 1993, 233:123-138. 10.1006/jmbi.1993.1489, 8377180.
-
(1993)
Journal of Molecular Biology
, vol.233
, pp. 123-138
-
-
Holm, L.1
Sander, C.2
-
18
-
-
0026137964
-
Least-square estimation of transformation parameters between two point patterns
-
Umeyama S. Least-square estimation of transformation parameters between two point patterns. IEEE Transactions on Pattern Analysis and Machine Intelligence 1991, 13(4):376-380.
-
(1991)
IEEE Transactions on Pattern Analysis and Machine Intelligence
, vol.13
, Issue.4
, pp. 376-380
-
-
Umeyama, S.1
|