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Volumn 21, Issue 7, 2005, Pages 1267-1268

SABmark - A benchmark for sequence alignment that covers the entire known fold space

Author keywords

[No Author keywords available]

Indexed keywords

ANALYTICAL ERROR; ARTICLE; CALCULATION; CLASSIFICATION; COMPUTER PROGRAM; MOLECULAR EVOLUTION; PRIORITY JOURNAL; REFERENCE VALUE; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS; SEQUENCE DATABASE; SEQUENCE HOMOLOGY;

EID: 16344394781     PISSN: 13674803     EISSN: 13674811     Source Type: Journal    
DOI: 10.1093/bioinformatics/bth493     Document Type: Article
Times cited : (177)

References (9)
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    • BAliBASE (Benchmark Alignment dataBASE): Enhancements for repeats, transmembrane sequences and circular permutations
    • Bahr,A., Thompson,J., Thierry,J. and Poch,O. (2001) BAliBASE (Benchmark Alignment dataBASE): enhancements for repeats, transmembrane sequences and circular permutations. Nucleic Acids Res., 29, 323-326.
    • (2001) Nucleic Acids Res. , vol.29 , pp. 323-326
    • Bahr, A.1    Thompson, J.2    Thierry, J.3    Poch, O.4
  • 3
    • 0028789439 scopus 로고
    • Optimal protein structure alignments by multiple linkage clustering: Application to distantly related proteins
    • Boutonnet,N., Rooman,M., Ochagavia,M., Richelle,J. and Wodak,S. (1995) Optimal protein structure alignments by multiple linkage clustering: application to distantly related proteins. Protein Eng. 8, 647-662.
    • (1995) Protein Eng. , vol.8 , pp. 647-662
    • Boutonnet, N.1    Rooman, M.2    Ochagavia, M.3    Richelle, J.4    Wodak, S.5
  • 5
    • 0028961335 scopus 로고
    • SCOP: A structural classification of proteins database for the investigation of sequences and structures
    • Murzin,A., Brenner,S., Hubbard,T. and Chothia,C. (1995) SCOP: a structural classification of proteins database for the investigation of sequences and structures. J. Mol. Biol., 247, 536-540.
    • (1995) J. Mol. Biol. , vol.247 , pp. 536-540
    • Murzin, A.1    Brenner, S.2    Hubbard, T.3    Chothia, C.4
  • 7
    • 0034237578 scopus 로고    scopus 로고
    • Large-scale comparison of protein sequence alignment algorithms with structure alignments
    • Sauder,J., Arthur,J. and Dunbrack,R. (2000) Large-scale comparison of protein sequence alignment algorithms with structure alignments. Proteins, 40, 6-22.
    • (2000) Proteins , vol.40 , pp. 6-22
    • Sauder, J.1    Arthur, J.2    Dunbrack, R.3
  • 8
    • 0031715982 scopus 로고    scopus 로고
    • Protein structure alignment by incremental combinatorial extension (CE) of the optimal path
    • Shindyalov,I. and Bourne,P. (1998) Protein structure alignment by incremental combinatorial extension (CE) of the optimal path. Protein Eng., 11, 739-747.
    • (1998) Protein Eng. , vol.11 , pp. 739-747
    • Shindyalov, I.1    Bourne, P.2
  • 9
    • 3042613056 scopus 로고    scopus 로고
    • Align-m - A new algorithm for multiple alignment of highly divergent sequences
    • Van Walle,I., Lasters,I. and Wyns,L. (2004) Align-m - a new algorithm for multiple alignment of highly divergent sequences. Bioinformatics, 20, 1428-1435.
    • (2004) Bioinformatics , vol.20 , pp. 1428-1435
    • Van Walle, I.1    Lasters, I.2    Wyns, L.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.