-
1
-
-
53749085372
-
The rules of gene expression in plants: Organ identity and gene body methylation are key factors for regulation of gene expression in Arabidopsis thaliana
-
doi:10.1186/1471-2164-9-438
-
Aceituno FF, Moseyko N, Rhee SY, Gutiérrez RA (2008) The rules of gene expression in plants: organ identity and gene body methylation are key factors for regulation of gene expression in Arabidopsis thaliana. BMC Genomics 9: 438. doi: 10. 1186/1471-2164-9-438.
-
(2008)
BMC Genomics
, vol.9
, pp. 438
-
-
Aceituno, F.F.1
Moseyko, N.2
Rhee, S.Y.3
Gutiérrez, R.A.4
-
4
-
-
0030949330
-
Induction of alternative oxidase synthesis by herbicides inhibiting branched chain amino acid synthesis
-
Aubert S, Bligny R, Day DA, Whelan J, Douce R (1997) Induction of alternative oxidase synthesis by herbicides inhibiting branched chain amino acid synthesis. Plant J 11: 649-657.
-
(1997)
Plant J
, vol.11
, pp. 649-657
-
-
Aubert, S.1
Bligny, R.2
Day, D.A.3
Whelan, J.4
Douce, R.5
-
5
-
-
38049146159
-
Characterization and engineering of the bifunctional N- and O-glucosyltransferase involved in xenobiotic metabolism in plants
-
Brazier-Hicks M, Offen WA, Gershater MC, Revett TJ, Lim EK, Bowles DJ, Davies GJ, Edwards R (2007) Characterization and engineering of the bifunctional N- and O-glucosyltransferase involved in xenobiotic metabolism in plants. Proc Natl Acad Sci USA 104: 20238-20243.
-
(2007)
Proc Natl Acad Sci USA
, vol.104
, pp. 20238-20243
-
-
Brazier-Hicks, M.1
Offen, W.A.2
Gershater, M.C.3
Revett, T.J.4
Lim, E.K.5
Bowles, D.J.6
Davies, G.J.7
Edwards, R.8
-
6
-
-
33846059234
-
The TIGR plant transcript assemblies database
-
Childs KL, Hamilton JP, Zhu W, Ly E, Cheung F, Wu H, Rabinowicz PD, Town CD, Buell R, Chan AP (2007) The TIGR plant transcript assemblies database. Nucleic Acids Res 35: D846-D851.
-
(2007)
Nucleic Acids Res
, vol.35
-
-
Childs, K.L.1
Hamilton, J.P.2
Zhu, W.3
Ly, E.4
Cheung, F.5
Wu, H.6
Rabinowicz, P.D.7
Town, C.D.8
Buell, R.9
Chan, A.P.10
-
7
-
-
51849115165
-
Improved elucidation of biological processes linked to diabetic nephropathy by single probe-based microarray data analysis
-
Cohen CD, Lindenmeyer MT, Eichinger F, Hahn A, Seifert M, Moll AG, Schmid H, Kiss E, Gröne E, Gröne HJ, Kretzler M, Werner T, Nelson PJ (2008) Improved elucidation of biological processes linked to diabetic nephropathy by single probe-based microarray data analysis. PLoS ONE 3(8): e2937.
-
(2008)
PLoS ONE
, vol.3
, Issue.8
-
-
Cohen, C.D.1
Lindenmeyer, M.T.2
Eichinger, F.3
Hahn, A.4
Seifert, M.5
Moll, A.G.6
Schmid, H.7
Kiss, E.8
Gröne, E.9
Gröne, H.J.10
Kretzler, M.11
Werner, T.12
Nelson, P.J.13
-
8
-
-
0036489046
-
Comparison of discriminant methods for the classification of tumors using gene expression data
-
Dudoit S, Fridlyand J, Speed TP (2002) Comparison of discriminant methods for the classification of tumors using gene expression data. J Am Stat Assoc 97: 77-87.
-
(2002)
J Am Stat Assoc
, vol.97
, pp. 77-87
-
-
Dudoit, S.1
Fridlyand, J.2
Speed, T.P.3
-
9
-
-
41349085389
-
Glyphosate: A once-in-a-century herbicide
-
Duke SO, Powles SB (2008) Glyphosate: a once-in-a-century herbicide. Pest Manag Sci 64: 319-325.
-
(2008)
Pest Manag Sci
, vol.64
, pp. 319-325
-
-
Duke, S.O.1
Powles, S.B.2
-
10
-
-
77950460652
-
-
ECFR
-
ECFR (2009) Data requirements for pesticides. http://ecfr.gpoaccess.gov/cgi/t/text/text-idx?c=ecfr&sid=013b05537f6069487ae3f2252ae1d5a0&rgn=div5&view=text&node=40:23.0.1.1.9&idno=40#40:23.0.1.1.9.7.1.2.
-
(2009)
Data requirements for pesticides
-
-
-
11
-
-
19944433661
-
Crosstalk and differential response to abiotic and biotic stressors reflected at the transcriptional level of effector genes from secondary metabolism
-
Glombitza S, Dubuis PH, Thulke O, Welzl G, Bovet L, Götz M, Affenzeller M, Geist B, Hehn A, Asnaghi C, Ernst D, Seidlitz HK, Gundlach H, Mayer KF, Martinoia E, Werck-Reichhart D, Mauch F, Schäffner AR (2004) Crosstalk and differential response to abiotic and biotic stressors reflected at the transcriptional level of effector genes from secondary metabolism. Plant Mol Biol 54: 817-835.
-
(2004)
Plant Mol Biol
, vol.54
, pp. 817-835
-
-
Glombitza, S.1
Dubuis, P.H.2
Thulke, O.3
Welzl, G.4
Bovet, L.5
Götz, M.6
Affenzeller, M.7
Geist, B.8
Hehn, A.9
Asnaghi, C.10
Ernst, D.11
Seidlitz, H.K.12
Gundlach, H.13
Mayer, K.F.14
Martinoia, E.15
Werck-Reichhart, D.16
Mauch, F.17
Schäffner, A.R.18
-
12
-
-
33845669975
-
Large scale cis-element detection by analysis of correlated expression and sequence conservation between Arabidopsis and Brassica oleracea
-
Haberer G, Mader MT, Kosarev P, Spannagl M, Yang L, Mayer KFX (2006) Large scale cis-element detection by analysis of correlated expression and sequence conservation between Arabidopsis and Brassica oleracea. Plant Physiol 142: 1589-1602.
-
(2006)
Plant Physiol
, vol.142
, pp. 1589-1602
-
-
Haberer, G.1
Mader, M.T.2
Kosarev, P.3
Spannagl, M.4
Yang, L.5
Mayer, K.F.X.6
-
13
-
-
0035963414
-
Protein dispensability and rate of evolution
-
Hirsh AE, Fraser HB (2001) Protein dispensability and rate of evolution. Nature 411: 1046-1049.
-
(2001)
Nature
, vol.411
, pp. 1046-1049
-
-
Hirsh, A.E.1
Fraser, H.B.2
-
14
-
-
0842263119
-
Quantitative expression analysis of GH3, a gene induced by plant growth regulator herbicides in soybean
-
Kelley KB, Lambert KN, Hager AG, Riechers DE (2004) Quantitative expression analysis of GH3, a gene induced by plant growth regulator herbicides in soybean. J Agric Food Chem 52: 474-478.
-
(2004)
J Agric Food Chem
, vol.52
, pp. 474-478
-
-
Kelley, K.B.1
Lambert, K.N.2
Hager, A.G.3
Riechers, D.E.4
-
15
-
-
33750318231
-
Evaluation of auxin responsive genes in soybean for detection of off-target plant growth regulator herbicides
-
Kelley KB, Zhang Q, Lambert KN, Riechers DE (2006) Evaluation of auxin responsive genes in soybean for detection of off-target plant growth regulator herbicides. Weed Sci 54: 220-229.
-
(2006)
Weed Sci
, vol.54
, pp. 220-229
-
-
Kelley, K.B.1
Zhang, Q.2
Lambert, K.N.3
Riechers, D.E.4
-
17
-
-
35348901902
-
Ancestral chromosomal blocks are triplicated in Brassicaceae species with varying chromosome number and genome size
-
Lysak MA, Kwok C, Michaela K, Petr B (2007) Ancestral chromosomal blocks are triplicated in Brassicaceae species with varying chromosome number and genome size. Plant Physiol 145: 402-410.
-
(2007)
Plant Physiol
, vol.145
, pp. 402-410
-
-
Lysak, M.A.1
Kwok, C.2
Michaela, K.3
Petr, B.4
-
18
-
-
33745833417
-
Genome-wide microarray analysis of the effect of a surfactant application in Arabidopsis
-
Madhou P, Raghavan C, Wells A, Stevenson TW (2006) Genome-wide microarray analysis of the effect of a surfactant application in Arabidopsis. Weed Res 46: 275-283.
-
(2006)
Weed Res
, vol.46
, pp. 275-283
-
-
Madhou, P.1
Raghavan, C.2
Wells, A.3
Stevenson, T.W.4
-
19
-
-
34548810391
-
CSR1, the sole target of imidazolinone herbicide in Arabidopsis thaliana
-
Manabe Y, Tinker N, Colville A, Miki B (2007) CSR1, the sole target of imidazolinone herbicide in Arabidopsis thaliana. Plant Cell Physiol 48: 1340-1358.
-
(2007)
Plant Cell Physiol
, vol.48
, pp. 1340-1358
-
-
Manabe, Y.1
Tinker, N.2
Colville, A.3
Miki, B.4
-
20
-
-
6444226267
-
Novel cell wall architecture of isoxaben-habituated Arabidopsis suspension-cultured cells: Global transcript profiling and cellular analysis
-
Manfield IW, Orfila C, McCartney L, Harholt J, Bernal AJ, Scheller HV, Gilmartin PM, Mikkelsen JD, Knox JP, Willats WGT (2004) Novel cell wall architecture of isoxaben-habituated Arabidopsis suspension-cultured cells: global transcript profiling and cellular analysis. Plant J 40: 260-275.
-
(2004)
Plant J
, vol.40
, pp. 260-275
-
-
Manfield, I.W.1
Orfila, C.2
McCartney, L.3
Harholt, J.4
Bernal, A.J.5
Scheller, H.V.6
Gilmartin, P.M.7
Mikkelsen, J.D.8
Knox, J.P.9
Willats, W.G.T.10
-
21
-
-
0038610839
-
Arabidopsis glucosyltransferases with activities toward both endogenous and xenobiotic substrates
-
Messner B, Thulke O, Schäffner AR (2003) Arabidopsis glucosyltransferases with activities toward both endogenous and xenobiotic substrates. Planta 212: 138-146.
-
(2003)
Planta
, vol.212
, pp. 138-146
-
-
Messner, B.1
Thulke, O.2
Schäffner, A.R.3
-
22
-
-
26944477806
-
Gene expression and microscopic analysis of Arabidopsis exposed to chloroacetanilide herbicides and explosive compounds. A phytoremediation approach
-
Mezzari MP, Walters K, Jelinkova M, Shih MC, Just CL, Schnoor JL (2005) Gene expression and microscopic analysis of Arabidopsis exposed to chloroacetanilide herbicides and explosive compounds. A phytoremediation approach. Plant Physiol 138: 858-869.
-
(2005)
Plant Physiol
, vol.138
, pp. 858-869
-
-
Mezzari, M.P.1
Walters, K.2
Jelinkova, M.3
Shih, M.C.4
Just, C.L.5
Schnoor, J.L.6
-
23
-
-
0034721782
-
Cytochrome P450 CYP79B2 from Arabidopsis catalyzes the conversion of tryptophan to indole-3-acetaldoxime, a precursor of indole glucosinolates and indole-3-acetic acid
-
Mikkelsen MD, Hansen CH, Wittstock U, Halkier BA (2000) Cytochrome P450 CYP79B2 from Arabidopsis catalyzes the conversion of tryptophan to indole-3-acetaldoxime, a precursor of indole glucosinolates and indole-3-acetic acid. J Biol Chem 275: 33712-33717.
-
(2000)
J Biol Chem
, vol.275
, pp. 33712-33717
-
-
Mikkelsen, M.D.1
Hansen, C.H.2
Wittstock, U.3
Halkier, B.A.4
-
24
-
-
34547701767
-
Arabidopsis cytochrome P450 monooxygenase 71A13 catalyzes the conversion of indole-3-acetaldoxime in camalexin synthesis
-
Nafisi M, Goregaoker S, Botanga CJ, Glawischnig E, Olsen CE, Halkier BA, Glazebrook J (2007) Arabidopsis cytochrome P450 monooxygenase 71A13 catalyzes the conversion of indole-3-acetaldoxime in camalexin synthesis. Plant Cell 19: 2039-2052.
-
(2007)
Plant Cell
, vol.19
, pp. 2039-2052
-
-
Nafisi, M.1
Goregaoker, S.2
Botanga, C.J.3
Glawischnig, E.4
Olsen, C.E.5
Halkier, B.A.6
Glazebrook, J.7
-
25
-
-
33845286150
-
Common and distinct gene expression patterns induced by the herbicides 2, 4-dichlorophenoxyacetic acid, cinidon-ethyl and tribenuron-methyl in wheat
-
Pasquer F, Ochsner U, Zarn J, Keller B (2006) Common and distinct gene expression patterns induced by the herbicides 2, 4-dichlorophenoxyacetic acid, cinidon-ethyl and tribenuron-methyl in wheat. Pest Manag Sci 62: 1155-1167.
-
(2006)
Pest Manag Sci
, vol.62
, pp. 1155-1167
-
-
Pasquer, F.1
Ochsner, U.2
Zarn, J.3
Keller, B.4
-
26
-
-
40549146278
-
The TAIR database
-
Poole RL (2007) The TAIR database. Methods Mol Biol 406: 179-212.
-
(2007)
Methods Mol Biol
, vol.406
, pp. 179-212
-
-
Poole, R.L.1
-
27
-
-
11244309576
-
Effect of herbicidal application of 2, 4-dichlorophenoxyacetic acid in Arabidopsis
-
Raghavan C, Ong EK, Dalling MJ, Stevenson TW (2005) Effect of herbicidal application of 2, 4-dichlorophenoxyacetic acid in Arabidopsis. Funct Integr Genomics 5: 4-17.
-
(2005)
Funct Integr Genomics
, vol.5
, pp. 4-17
-
-
Raghavan, C.1
Ong, E.K.2
Dalling, M.J.3
Stevenson, T.W.4
-
28
-
-
29544441569
-
Regulation of genes associated with auxin, ethylene and ABA pathways by 2, 4-dichlorophenoxyacetic acid in Arabidopsis
-
Raghavan C, Ong EK, Dalling MJ, Stevenson TW (2006) Regulation of genes associated with auxin, ethylene and ABA pathways by 2, 4-dichlorophenoxyacetic acid in Arabidopsis. Funct Integr Genomics 6: 60-70.
-
(2006)
Funct Integr Genomics
, vol.6
, pp. 60-70
-
-
Raghavan, C.1
Ong, E.K.2
Dalling, M.J.3
Stevenson, T.W.4
-
29
-
-
33747839466
-
CARMAweb: Comprehensive R- and bioconductor- based web service for microarray data analysis
-
Rainer J, Sanchez-Cabo F, Stocker G, Sturn A, Trajanoski Z (2006) CARMAweb: comprehensive R- and bioconductor- based web service for microarray data analysis. Nucleic Acids Res 34: W498-W503.
-
(2006)
Nucleic Acids Res
, vol.34
-
-
Rainer, J.1
Sanchez-Cabo, F.2
Stocker, G.3
Sturn, A.4
Trajanoski, Z.5
-
30
-
-
4444357701
-
Metabolite profiling of plants-a new diagnostic technique
-
Sauter H, Lauer M, Fritsch H (1988) Metabolite profiling of plants-a new diagnostic technique. Abstr Pap Am Chem Soc 195: 129.
-
(1988)
Abstr Pap Am Chem Soc
, vol.195
, pp. 129
-
-
Sauter, H.1
Lauer, M.2
Fritsch, H.3
-
31
-
-
2942608807
-
-
New York: Springer
-
Simon RM, Korn EL, McShane LM, Radmacher MD, Wright GW, Zhao Y (2003) Design and analysis of DNA microarray investigations. Series: statistics in biology and health. Springer, New York.
-
(2003)
Design and Analysis of DNA Microarray Investigations. Series: Statistics in Biology and Health
-
-
Simon, R.M.1
Korn, E.L.2
Mcshane, L.M.3
Radmacher, M.D.4
Wright, G.W.5
Zhao, Y.6
-
32
-
-
85047683800
-
AtFXG1, an Arabidopsis gene encoding α-l-fucosidase active against fucosylated xyloglucan oligosaccharides
-
Torre FDL, Sampedro J, Zarra I, Revilla G (2002) AtFXG1, an Arabidopsis gene encoding α-l-fucosidase active against fucosylated xyloglucan oligosaccharides. Plant Physiol 128: 247-255.
-
(2002)
Plant Physiol
, vol.128
, pp. 247-255
-
-
Torre, F.D.L.1
Sampedro, J.2
Zarra, I.3
Revilla, G.4
-
33
-
-
33745467604
-
Comparative genomics of Brassica oleracea and Arabidopsis thaliana reveal gene loss, fragmentation, and dispersal after polyploidy
-
Town CD, Cheung F, Maiti R, Crabtree J, Haas BJ, Wortman JR, Hine EE, Althoff R, Arbogast TS, Tallon LJ, Vigouroux M, Trick M, Bancroft I (2006) Comparative genomics of Brassica oleracea and Arabidopsis thaliana reveal gene loss, fragmentation, and dispersal after polyploidy. Plant Cell 18: 1348-1359.
-
(2006)
Plant Cell
, vol.18
, pp. 1348-1359
-
-
Town, C.D.1
Cheung, F.2
Maiti, R.3
Crabtree, J.4
Haas, B.J.5
Wortman, J.R.6
Hine, E.E.7
Althoff, R.8
Arbogast, T.S.9
Tallon, L.J.10
Vigouroux, M.11
Trick, M.12
Bancroft, I.13
-
34
-
-
0035942271
-
Significance analysis of microarrays applied to the ionizing radiation response
-
Tusher VG, Tibshirani R, Chu G (2001) Significance analysis of microarrays applied to the ionizing radiation response. Proc Natl Acad Sci USA 98: 5116-5121.
-
(2001)
Proc Natl Acad Sci USA
, vol.98
, pp. 5116-5121
-
-
Tusher, V.G.1
Tibshirani, R.2
Chu, G.3
-
35
-
-
27244453164
-
Extension of the visualization tool MapMan to allow statistical analysis of arrays, display of corresponding genes, and comparison with known responses
-
Usadel B, Nagel A, Thimm O, Redestig H, Blaesing OE, Palacios-Rojas N, Selbig J, Hannemann J, Piques MC, Steinhauser D, Scheible WR, Gibon Y, Morcuende R, Weicht D, Meyer S, Stitt M (2005) Extension of the visualization tool MapMan to allow statistical analysis of arrays, display of corresponding genes, and comparison with known responses. Plant Physiol 138: 1195-1204.
-
(2005)
Plant Physiol
, vol.138
, pp. 1195-1204
-
-
Usadel, B.1
Nagel, A.2
Thimm, O.3
Redestig, H.4
Blaesing, O.E.5
Palacios-Rojas, N.6
Selbig, J.7
Hannemann, J.8
Piques, M.C.9
Steinhauser, D.10
Scheible, W.R.11
Gibon, Y.12
Morcuende, R.13
Weicht, D.14
Meyer, S.15
Stitt, M.16
-
36
-
-
0037129827
-
Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes
-
Vandesompele J, Preter KD, Pattyn F, Poppe B, Roy ND, Paepe AD, Speleman F (2002) Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes. Genome Biol 3: 34. 1-34. 11.
-
(2002)
Genome Biol
, vol.3
, pp. 1-11
-
-
Vandesompele, J.1
Preter, K.D.2
Pattyn, F.3
Poppe, B.4
Roy, N.D.5
Paepe, A.D.6
Speleman, F.7
-
37
-
-
0035983888
-
Probing the diversity of the Arabidopsis glutathione S-transferase gene family
-
Wagner U, Edwards R, Dixon DP, Mauch F (2002) Probing the diversity of the Arabidopsis glutathione S-transferase gene family. Plant Mol Biol 49: 515-532.
-
(2002)
Plant Mol Biol
, vol.49
, pp. 515-532
-
-
Wagner, U.1
Edwards, R.2
Dixon, D.P.3
Mauch, F.4
-
38
-
-
34548188940
-
Action mechanisms of acetolactate synthase inhibiting herbicides
-
Zhou Q, Liu W, Zhang Y, Liu KK (2007) Action mechanisms of acetolactate synthase inhibiting herbicides. Pest Biochem Physiol 89: 89-96.
-
(2007)
Pest Biochem Physiol
, vol.89
, pp. 89-96
-
-
Zhou, Q.1
Liu, W.2
Zhang, Y.3
Liu, K.K.4
|