Characterization of an atlantic cod (Gadus morhua) embryonic stem cell cDNA library

BMC Research Notes

Volumn 2, Issue , 2009, Pages

  Olsvik, Pål A ^a   Holen, Elisabeth ^a  

^a INSTITUTE OF MARINE RESEARCH   (Norway)

Author keywords

[No Author keywords available]

Indexed keywords

GADUS MORHUA;

EID: 77049125336     PISSN: None     EISSN: 17560500     Source Type: Journal    
DOI: 10.1186/1756-0500-2-74     Document Type: Article

References (21)

1. Global transcription in pluripotent embryonic stem cells. S Efroni R Duttagupta J Cheng H Dehghani DJ Hoeppner C Dash DP Bazett-Jones S Le Grice RDG Mckay KH Buetow, et al. Cell Stem Cell 2008 2 5 437 447 10.1016/j.stem.2008.03. 021 18462694
2. Stages of embryonic development in the Atlantic Cod Gadus morhua. TE Hall P Smith IA Johnston, J Morphol 2004 259 255 270 10.1002/jmor.10222 14994326
3. The medaka midblastula transition as revealed by the expression of the paternal genome. K Aizawa A Shimada K Naruse H Mitani A Shima, Gene Expression Patterns 2003 3 1 43 47 10.1016/S1567-133X(02)00075-3 12609601
4. Identification of zygotic genes expressed at the midblastula transition in zebrafish. S O'boyle RT Bree S McLoughlin M Grealy L Byrnes, Biochem Biophys Res Comm 2007 358 2 462 468 10.1016/j.bbrc.2007.04.116 17490614
5. Cloning and expression of medaka dazl during ernbryogenesis and gametogenesis. HY Xu MY Li JF Gui YH Hong, Gene Expression Patterns 2007 7 3 332 338 10.1016/j.modgep.2006.08.001 16979959
6. Base-calling of automated sequencer traces using Phred. II. Error probabilities. B Ewing P Green, Genome Res 1998 8 3 186 194 9521922 (Pubitemid 28177230)
7. Cap3: A DNA sequence assembly program. XQ Huang A Madan, Genome Res 1999 9 9 868 877 10508846 10.1101/gr.9.9.868 (Pubitemid 29488446)
8. RBR: library-less repeat detection for ESTs. K Malde K Schneeberger E Coward I Jonassen, Bioinformatics 2006 22 18 2232 2236 10.1093/bioinformatics/ btl368 16837527
9. Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research. A Conesa S Gotz JM Garcia-Gomez J Terol M Talon M Robles, Bioinformatics 2005 21 18 3674 3676 10.1093/bioinformatics/bti610 16081474
10. Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes. J Vandesompele KD Preter F Pattyn B Poppe NV Roy AD Paepe F Speleman, Genome Biol 2002 3 7 esearch0034.1 0034.11 10.1186/gb-2002-3-7-research0034
11. Normalization of real-time quantitative reverse transcription-PCR data: A model-based variance estimation approach to identify genes suited for normalization, applied to bladder and colon cancer data sets. CL Andersen JL Jensen TF Orntoft, Cancer Research 2004 64 15 5245 5250 10.1158/0008-5472.CAN- 04-0496 15289330
12. Selection of reference genes for qRT-PCR examination of wild populations of Atlantic cod Gadus morhua. PA Olsvik Liv Søfteland Kai K Lie, BMC Res Notes 2008 1 47 18710500 10.1186/1756-0500-1-47
13. UniGene Atlantic cod Embryonic Stem Cell cDNA library. http://www.ncbi.nlm.nih.gov/UniGene/library.cgi?ORG=Gmr&LID=22021
14. UniGene Atlantic cod cDNA libraries. http://www.ncbi.nlm.nih.gov/UniGene/ lbrowse2.cgi?TAXID=8049&log$=breadcrumbs
15. GeneCards Database. http://www.genecards.org/index.shtml
16. Tackling the epigenome in the pluripotent stem cells. XD Zhao YJ Ruan CL Wei, J Genet Genomics 2008 35 7 403 412 10.1016/S1673-8527(08)60058-2 18640620
17. Identification of FXYD protein genes in a teleost: tissue-specific expression and response to salinity change. CK Tipsmark, Am J Physiol Regul Integr Comp Physiol 2008 294 1367 R1378 18256141
18. Gene Ontology Consortium. http://www.geneontology.org/
19. Selection of reference genes in mouse embryos and in differentiating human and mouse ES cells. E Willems I Mateizel C Kemp G Cauffman K Sermon L Leyns, Int J Develop Biol 2006 50 7 627 635 10.1387/ijdb.052130ew (Pubitemid 44544752)
20. Mechanisms controlling embryonic stem cell self-renewal and differentiation. Y Sun H Li H Yang MS Rao M Zhan, Crit Rev Eukaryot Gene Expr 2006 16 3 211 231 17073552
21. Nanog and Oct4 associate with unique transcriptional repression complexes in embryonic stem cells. J Liang M Wan Y Zhang PL Gu HW Xin SY Jung J Qin JM Wong AJ Cooney D Liu, et al. Nature Cell Biol 2008 10 6 731 739 10.1038/ncb1736 18454139