-
1
-
-
1642453927
-
Photoreceptor proteins, "star actors of modern times": a review of the functional dynamics in the structure of representative members of six different photoreceptor families
-
10.1021/ar020219d, 14730990
-
Horst MA, Hellingwerf KJ. Photoreceptor proteins, "star actors of modern times": a review of the functional dynamics in the structure of representative members of six different photoreceptor families. Acc Chem Res 2004, 37(1):13-20. 10.1021/ar020219d, 14730990.
-
(2004)
Acc Chem Res
, vol.37
, Issue.1
, pp. 13-20
-
-
Horst, M.A.1
Hellingwerf, K.J.2
-
2
-
-
0030457156
-
Localizing the NADP+ binding site on the MurB enzyme by NMR
-
10.1038/nsb1296-995, 8946851
-
Farmer BT, Constantine KL, Goldfarb V, Friedrichs MS, Wittekind M, Yanchunas J, Robertson JG, Mueller L. Localizing the NADP+ binding site on the MurB enzyme by NMR. Nat Struct Biol 1996, 3(12):995-997. 10.1038/nsb1296-995, 8946851.
-
(1996)
Nat Struct Biol
, vol.3
, Issue.12
, pp. 995-997
-
-
Farmer, B.T.1
Constantine, K.L.2
Goldfarb, V.3
Friedrichs, M.S.4
Wittekind, M.5
Yanchunas, J.6
Robertson, J.G.7
Mueller, L.8
-
3
-
-
0033543577
-
Altered flexibility in the substrate-binding site of related native and engineered high-alkaline Bacillus subtilisins
-
10.1006/jmbi.1999.3034, 10493861
-
Mulder FA, Schipper D, Bott R, Boelens R. Altered flexibility in the substrate-binding site of related native and engineered high-alkaline Bacillus subtilisins. J Mol Biol 1999, 292(1):111-123. 10.1006/jmbi.1999.3034, 10493861.
-
(1999)
J Mol Biol
, vol.292
, Issue.1
, pp. 111-123
-
-
Mulder, F.A.1
Schipper, D.2
Bott, R.3
Boelens, R.4
-
4
-
-
0037039335
-
Mapping protein-protein interactions in solution by NMR spectroscopy
-
10.1021/bi011870b, 11771996
-
Zuiderweg ER. Mapping protein-protein interactions in solution by NMR spectroscopy. Biochemistry 2002, 41(1):1-7. 10.1021/bi011870b, 11771996.
-
(2002)
Biochemistry
, vol.41
, Issue.1
, pp. 1-7
-
-
Zuiderweg, E.R.1
-
5
-
-
35848958773
-
Combined chemical shift changes and amino acid specific chemical shift mapping of protein-protein interactions
-
10.1007/s10858-007-9197-z, 17955183
-
Schumann FH, Riepl H, Maurer T, Gronwald W, Neidig KP, Kalbitzer HR. Combined chemical shift changes and amino acid specific chemical shift mapping of protein-protein interactions. J Biomol NMR 2007, 39(4):275-289. 10.1007/s10858-007-9197-z, 17955183.
-
(2007)
J Biomol NMR
, vol.39
, Issue.4
, pp. 275-289
-
-
Schumann, F.H.1
Riepl, H.2
Maurer, T.3
Gronwald, W.4
Neidig, K.P.5
Kalbitzer, H.R.6
-
6
-
-
38549138986
-
BioMagResBank
-
Database, 2238925, 17984079
-
Ulrich EL, Akutsu H, Doreleijers JF, Harano Y, Ioannidis YE, Lin J, Livny M, Mading S, Maziuk D, Miller Z, et al. BioMagResBank. Nucleic Acids Res 2008, (36 Database):D402-408. 2238925, 17984079.
-
(2008)
Nucleic Acids Res
, Issue.36
-
-
Ulrich, E.L.1
Akutsu, H.2
Doreleijers, J.F.3
Harano, Y.4
Ioannidis, Y.E.5
Lin, J.6
Livny, M.7
Mading, S.8
Maziuk, D.9
Miller, Z.10
-
7
-
-
0024278654
-
The three-dimensional structure of Bacillus amyloliquefaciens subtilisin at 1.8 A and an analysis of the structural consequences of peroxide inactivation
-
Bott R, Ultsch M, Kossiakoff A, Graycar T, Katz B, Power S. The three-dimensional structure of Bacillus amyloliquefaciens subtilisin at 1.8 A and an analysis of the structural consequences of peroxide inactivation. J Biol Chem 1988, 263(16):7895-7906.
-
(1988)
J Biol Chem
, vol.263
, Issue.16
, pp. 7895-7906
-
-
Bott, R.1
Ultsch, M.2
Kossiakoff, A.3
Graycar, T.4
Katz, B.5
Power, S.6
-
8
-
-
0036678453
-
A clogged gutter mechanism for protease inhibitors
-
10.1073/pnas.112332899, 124911, 12142461
-
Radisky ES, Koshland DE. A clogged gutter mechanism for protease inhibitors. Proc Natl Acad Sci USA 2002, 99(16):10316-10321. 10.1073/pnas.112332899, 124911, 12142461.
-
(2002)
Proc Natl Acad Sci USA
, vol.99
, Issue.16
, pp. 10316-10321
-
-
Radisky, E.S.1
Koshland, D.E.2
-
9
-
-
0028607435
-
Identification of a human ubiquitin-conjugating enzyme that mediates the E6-AP-dependent ubiquitination of p53
-
10.1073/pnas.91.19.8797, 44693, 8090726
-
Scheffner M, Huibregtse JM, Howley PM. Identification of a human ubiquitin-conjugating enzyme that mediates the E6-AP-dependent ubiquitination of p53. Proc Natl Acad Sci USA 1994, 91(19):8797-8801. 10.1073/pnas.91.19.8797, 44693, 8090726.
-
(1994)
Proc Natl Acad Sci USA
, vol.91
, Issue.19
, pp. 8797-8801
-
-
Scheffner, M.1
Huibregtse, J.M.2
Howley, P.M.3
-
10
-
-
0034141888
-
Isolation and characterization of human orthologs of yeast CCR4-NOT complex subunits
-
10.1093/nar/28.3.809, 102560, 10637334
-
Albert TK, Lemaire M, van Berkum NL, Gentz R, Collart MA, Timmers HT. Isolation and characterization of human orthologs of yeast CCR4-NOT complex subunits. Nucleic Acids Res 2000, 28(3):809-817. 10.1093/nar/28.3.809, 102560, 10637334.
-
(2000)
Nucleic Acids Res
, vol.28
, Issue.3
, pp. 809-817
-
-
Albert, T.K.1
Lemaire, M.2
van Berkum, N.L.3
Gentz, R.4
Collart, M.A.5
Timmers, H.T.6
-
11
-
-
30044437590
-
Mechanistic insight into the allosteric activation of a ubiquitin-conjugating enzyme by RING-type ubiquitin ligases
-
10.1073/pnas.0509418102, 1316884,1316884, 16365295
-
Ozkan E, Yu H, Deisenhofer J. Mechanistic insight into the allosteric activation of a ubiquitin-conjugating enzyme by RING-type ubiquitin ligases. Proc Natl Acad Sci USA 2005, 102(52):18890-18895. 10.1073/pnas.0509418102, 1316884,1316884, 16365295.
-
(2005)
Proc Natl Acad Sci USA
, vol.102
, Issue.52
, pp. 18890-18895
-
-
Ozkan, E.1
Yu, H.2
Deisenhofer, J.3
-
12
-
-
36748998784
-
HADDOCK versus HADDOCK: new features and performance of HADDOCK2.0 on the CAPRI targets
-
10.1002/prot.21723, 17803234
-
de Vries SJ, van Dijk AD, Krzeminski M, van Dijk M, Thureau A, Hsu V, Wassenaar T, Bonvin AM. HADDOCK versus HADDOCK: new features and performance of HADDOCK2.0 on the CAPRI targets. Proteins 2007, 69(4):726-733. 10.1002/prot.21723, 17803234.
-
(2007)
Proteins
, vol.69
, Issue.4
, pp. 726-733
-
-
de Vries, S.J.1
van Dijk, A.D.2
Krzeminski, M.3
van Dijk, M.4
Thureau, A.5
Hsu, V.6
Wassenaar, T.7
Bonvin, A.M.8
-
13
-
-
0037442962
-
HADDOCK: a protein-protein docking approach based on biochemical or biophysical information
-
10.1021/ja026939x, 12580598
-
Dominguez C, Boelens R, Bonvin AM. HADDOCK: a protein-protein docking approach based on biochemical or biophysical information. J Am Chem Soc 2003, 125(7):1731-1737. 10.1021/ja026939x, 12580598.
-
(2003)
J Am Chem Soc
, vol.125
, Issue.7
, pp. 1731-1737
-
-
Dominguez, C.1
Boelens, R.2
Bonvin, A.M.3
-
14
-
-
0034682718
-
Structure of a c-Cbl-UbcH7 complex: RING domain function in ubiquitin-protein ligases
-
10.1016/S0092-8674(00)00057-X, 10966114
-
Zheng N, Wang P, Jeffrey PD, Pavletich NP. Structure of a c-Cbl-UbcH7 complex: RING domain function in ubiquitin-protein ligases. Cell 2000, 102(4):533-539. 10.1016/S0092-8674(00)00057-X, 10966114.
-
(2000)
Cell
, vol.102
, Issue.4
, pp. 533-539
-
-
Zheng, N.1
Wang, P.2
Jeffrey, P.D.3
Pavletich, N.P.4
-
15
-
-
0034283147
-
Specificity in protein-protein interactions: the structural basis for dual recognition in endonuclease colicin-immunity protein complexes
-
10.1006/jmbi.2000.3945, 10966813
-
Kuhlmann UC, Pommer AJ, Moore GR, James R, Kleanthous C. Specificity in protein-protein interactions: the structural basis for dual recognition in endonuclease colicin-immunity protein complexes. J Mol Biol 2000, 301(5):1163-1178. 10.1006/jmbi.2000.3945, 10966813.
-
(2000)
J Mol Biol
, vol.301
, Issue.5
, pp. 1163-1178
-
-
Kuhlmann, U.C.1
Pommer, A.J.2
Moore, G.R.3
James, R.4
Kleanthous, C.5
-
16
-
-
0033147288
-
Assignment of 1H, 13C and 15N signals of the DNase domain of colicin E9
-
10.1023/A:1008394407597, 10610142
-
Whittaker SB, Boetzel R, MacDonald C, Lian LY, James R, Kleanthous C, Moore GR. Assignment of 1H, 13C and 15N signals of the DNase domain of colicin E9. J Biomol NMR 1999, 14(2):201-202. 10.1023/A:1008394407597, 10610142.
-
(1999)
J Biomol NMR
, vol.14
, Issue.2
, pp. 201-202
-
-
Whittaker, S.B.1
Boetzel, R.2
MacDonald, C.3
Lian, L.Y.4
James, R.5
Kleanthous, C.6
Moore, G.R.7
-
17
-
-
0034051071
-
Slow conformational dynamics of an endonuclease persist in its complex with its natural protein inhibitor
-
2144623, 10794413
-
Whittaker SB, Czisch M, Wechselberger R, Kaptein R, Hemmings AM, James R, Kleanthous C, Moore GR. Slow conformational dynamics of an endonuclease persist in its complex with its natural protein inhibitor. Protein Sci 2000, 9(4):713-720. 2144623, 10794413.
-
(2000)
Protein Sci
, vol.9
, Issue.4
, pp. 713-720
-
-
Whittaker, S.B.1
Czisch, M.2
Wechselberger, R.3
Kaptein, R.4
Hemmings, A.M.5
James, R.6
Kleanthous, C.7
Moore, G.R.8
-
18
-
-
0029783011
-
Three-dimensional solution structure and 13C nuclear magnetic resonance assignments of the colicin E9 immunity protein Im9
-
10.1021/bi960401k, 8755730
-
Osborne MJ, Breeze AL, Lian LY, Reilly A, James R, Kleanthous C, Moore GR. Three-dimensional solution structure and 13C nuclear magnetic resonance assignments of the colicin E9 immunity protein Im9. Biochemistry 1996, 35(29):9505-9512. 10.1021/bi960401k, 8755730.
-
(1996)
Biochemistry
, vol.35
, Issue.29
, pp. 9505-9512
-
-
Osborne, M.J.1
Breeze, A.L.2
Lian, L.Y.3
Reilly, A.4
James, R.5
Kleanthous, C.6
Moore, G.R.7
-
19
-
-
0032201577
-
Assignment of 1H, 13C and 15N signals of the inhibitor protein Im9 bound to the DNase domain of colicin E9
-
10.1023/A:1008397523780, 9917143
-
Boetzel R, Czisch M, MacDonald CJ, Kaptein R, Hemmings AM, James R, Kleanthous C, Moore GR. Assignment of 1H, 13C and 15N signals of the inhibitor protein Im9 bound to the DNase domain of colicin E9. J Biomol NMR 1998, 12(4):567-568. 10.1023/A:1008397523780, 9917143.
-
(1998)
J Biomol NMR
, vol.12
, Issue.4
, pp. 567-568
-
-
Boetzel, R.1
Czisch, M.2
MacDonald, C.J.3
Kaptein, R.4
Hemmings, A.M.5
James, R.6
Kleanthous, C.7
Moore, G.R.8
-
20
-
-
34249951731
-
Structural analysis of lac repressor bound to allosteric effectors
-
10.1016/j.jmb.2007.04.028, 2715899, 17543986
-
Daber R, Stayrook S, Rosenberg A, Lewis M. Structural analysis of lac repressor bound to allosteric effectors. J Mol Biol 2007, 370(4):609-619. 10.1016/j.jmb.2007.04.028, 2715899, 17543986.
-
(2007)
J Mol Biol
, vol.370
, Issue.4
, pp. 609-619
-
-
Daber, R.1
Stayrook, S.2
Rosenberg, A.3
Lewis, M.4
-
21
-
-
0029938053
-
Crystal structure of the lactose operon repressor and its complexes with DNA and inducer
-
10.1126/science.271.5253.1247, 8638105
-
Lewis M, Chang G, Horton NC, Kercher MA, Pace HC, Schumacher MA, Brennan RG, Lu P. Crystal structure of the lactose operon repressor and its complexes with DNA and inducer. Science 1996, 271(5253):1247-1254. 10.1126/science.271.5253.1247, 8638105.
-
(1996)
Science
, vol.271
, Issue.5253
, pp. 1247-1254
-
-
Lewis, M.1
Chang, G.2
Horton, N.C.3
Kercher, M.A.4
Pace, H.C.5
Schumacher, M.A.6
Brennan, R.G.7
Lu, P.8
-
22
-
-
0035253082
-
The Lac repressor: a second generation of structural and functional studies
-
10.1016/S0959-440X(00)00180-9, 11179887
-
Bell CE, Lewis M. The Lac repressor: a second generation of structural and functional studies. Curr Opin Struct Biol 2001, 11(1):19-25. 10.1016/S0959-440X(00)00180-9, 11179887.
-
(2001)
Curr Opin Struct Biol
, vol.11
, Issue.1
, pp. 19-25
-
-
Bell, C.E.1
Lewis, M.2
-
23
-
-
0032463483
-
Current topics in signal transduction in bacteria
-
10.1023/A:1001738419877, 10081581
-
Hellingwerf KJ, Crielaard WC, Joost Teixeira de Mattos M, Hoff WD, Kort R, Verhamme DT, Avignone-Rossa C. Current topics in signal transduction in bacteria. Antonie Van Leeuwenhoek 1998, 74(4):211-227. 10.1023/A:1001738419877, 10081581.
-
(1998)
Antonie Van Leeuwenhoek
, vol.74
, Issue.4
, pp. 211-227
-
-
Hellingwerf, K.J.1
Crielaard, W.C.2
Joost Teixeira de Mattos, M.3
Hoff, W.D.4
Kort, R.5
Verhamme, D.T.6
Avignone-Rossa, C.7
-
24
-
-
0037596438
-
Solution structure and backbone dynamics of the photoactive yellow protein
-
10.1021/bi9806652, 9737845
-
Dux P, Rubinstenn G, Vuister GW, Boelens R, Mulder FA, Hard K, Hoff WD, Kroon AR, Crielaard W, Hellingwerf KJ, et al. Solution structure and backbone dynamics of the photoactive yellow protein. Biochemistry 1998, 37(37):12689-12699. 10.1021/bi9806652, 9737845.
-
(1998)
Biochemistry
, vol.37
, Issue.37
, pp. 12689-12699
-
-
Dux, P.1
Rubinstenn, G.2
Vuister, G.W.3
Boelens, R.4
Mulder, F.A.5
Hard, K.6
Hoff, W.D.7
Kroon, A.R.8
Crielaard, W.9
Hellingwerf, K.J.10
-
25
-
-
0031821274
-
Structural and dynamic changes of photoactive yellow protein during its photocycle in solution
-
10.1038/823, 9665170
-
Rubinstenn G, Vuister GW, Mulder FA, Dux PE, Boelens R, Hellingwerf KJ, Kaptein R. Structural and dynamic changes of photoactive yellow protein during its photocycle in solution. Nat Struct Biol 1998, 5(7):568-570. 10.1038/823, 9665170.
-
(1998)
Nat Struct Biol
, vol.5
, Issue.7
, pp. 568-570
-
-
Rubinstenn, G.1
Vuister, G.W.2
Mulder, F.A.3
Dux, P.E.4
Boelens, R.5
Hellingwerf, K.J.6
Kaptein, R.7
-
26
-
-
0032568630
-
Photoactive yellow protein: a structural prototype for the three-dimensional fold of the PAS domain superfamily
-
10.1073/pnas.95.11.5884, 34491, 9600888
-
Pellequer JL, Wager-Smith KA, Kay SA, Getzoff ED. Photoactive yellow protein: a structural prototype for the three-dimensional fold of the PAS domain superfamily. Proc Natl Acad Sci USA 1998, 95(11):5884-5890. 10.1073/pnas.95.11.5884, 34491, 9600888.
-
(1998)
Proc Natl Acad Sci USA
, vol.95
, Issue.11
, pp. 5884-5890
-
-
Pellequer, J.L.1
Wager-Smith, K.A.2
Kay, S.A.3
Getzoff, E.D.4
-
27
-
-
21744460380
-
The solution structure of a transient photoreceptor intermediate: Delta25 photoactive yellow protein
-
10.1016/j.str.2005.04.017, 16004868
-
Bernard C, Houben K, Derix NM, Marks D, Horst MA, Hellingwerf KJ, Boelens R, Kaptein R, van Nuland NA. The solution structure of a transient photoreceptor intermediate: Delta25 photoactive yellow protein. Structure 2005, 13(7):953-962. 10.1016/j.str.2005.04.017, 16004868.
-
(2005)
Structure
, vol.13
, Issue.7
, pp. 953-962
-
-
Bernard, C.1
Houben, K.2
Derix, N.M.3
Marks, D.4
Horst, M.A.5
Hellingwerf, K.J.6
Boelens, R.7
Kaptein, R.8
van Nuland, N.A.9
-
28
-
-
0033931867
-
Assessing the accuracy of prediction algorithms for classification: an overview
-
10.1093/bioinformatics/16.5.412, 10871264
-
Baldi P, Brunak S, Chauvin Y, Andersen CA, Nielsen H. Assessing the accuracy of prediction algorithms for classification: an overview. Bioinformatics 2000, 16(5):412-424. 10.1093/bioinformatics/16.5.412, 10871264.
-
(2000)
Bioinformatics
, vol.16
, Issue.5
, pp. 412-424
-
-
Baldi, P.1
Brunak, S.2
Chauvin, Y.3
Andersen, C.A.4
Nielsen, H.5
|