Phylogenetic relationships and a revised taxonomy for north american cyprinids currently assigned to phoxinus (actinopterygii: Cyprinidae)

Copeia

Volumn 2009, Issue 3, 2009, Pages 494-501

  Strange, Rex Meade ^a   Mayden, Richard L ^b  

^a UNIVERSITY OF SOUTHERN INDIANA   (United States)

^b SAINT LOUIS UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BOREAL KINGDOM; CYPRINID; CYTOCHROME; EVOLUTIONARY THEORY; GENE; GEOGRAPHICAL DISTRIBUTION; MITOCHONDRIAL DNA; PHYLOGENETICS; TAXONOMY;

ACTINOPTERYGII; CHROSOMUS; CHROSOMUS NEOGAEUS; CYPRINIDAE; CYPRINIFORMES; PHOXINUS; PHOXINUS PHOXINUS;

EID: 76849092710     PISSN: 00458511     EISSN: None     Source Type: Journal    
DOI: 10.1643/CI-07-070     Document Type: Article

References (50)

1. Akaike, H. 1974. A new look at the statistical model identification. IEEE Transactions on Automatic Control 19:716-723.
2. Bailey, R. M. 1951. A revised checklist of the fishes of Iowa, with keys for identification, p. 187-238. In: Iowa Fish and Fishing. Third edition. J. R. Harlan and E. B. Speaker (eds.). State Conservation Commission, Ames, Iowa.
3. Banarescu, P. 1964. Fauna Republicii Populare Romine. Pisces-Osteichthys. Editura Academiei Republicii Populare Romine, Bucuresti, Romine.
4. Banarescu, P. 1990. Zoogeography of Freshwaters. AULA-Verlag, Weisbaden, Germany.
5. th edition, 1964). Academy of Sciences of the U.S.S.R., Zoological Institute, Moscow.
6. Briolay, J., N. Galtier, R. M. Brito, and Y. Bouvet. 1998. Molecular phylogeny of Cyprinidae inferred from cyto-chrome b DNA sequences. Molecular Phylogenetics and Evolution 9:100-108.
7. Brooks, D. R., and D. A. McLennan. 1991. Phylogeny, Ecology, and Behavior. University of Chicago Press, Chicago.
8. Burr, B. M., and M. L. Warren. 1986. A Distributional Atlas of Kentucky Fishes. Kentucky Nature Preserves Commission Scientific and Technical Series No. 4.
9. Cantatore, P., M. Roberti, G. Pesole, A. Ludovico, F. Milella, M. N. Gadaleta, and C. Saccone. 1994. Evolutionary analysis of cytochrome b sequences in some perciformes: evidence for a slower rate of evolution than in mammals. Journal of Molecular Evolution 39:589-597.
10. Chen, X. Y. 1994. Morphology, phylogeny, biogeography, and systematics of Phoxinus (Pisces: Cyprinidae). Unpubl. Ph.D. diss., University of Kansas, Lawrence, Kansas.
11. Coburn, M. M., and T. M. Cavender. 1992. Interrelationships of North American cyprinid fishes, p. 328-373. In: Systematics, Historical Ecology, and North American Freshwater Fishes. R. L. Mayden (ed.). Stanford University Press, Stanford, California.
12. Cunha, C., N. Mesquita, T. E. Dowling, A. Gilles, and M. M. Coelho. 2002. Phylogenetic relationships of Eurasian and American cyprinids using cytochrome b sequences. Journal of Fish Biology 61:929-944.
13. Etnier, D. A., and W. C. Starnes. 1993. The Fishes of Tennessee. University of Tennessee Press, Knoxville, Tennessee.
14. Felsenstein, J. 1981. Evolutionary trees from DNA sequences: a maximum likelihood approach. Journal of Molecular Evolution 17:368-376.
15. Felsenstein, J. 1985a. Phylogenies and the comparative method. American Naturalist 125:1-12.
16. Felsenstein, J. 1985b. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39:783-791.
17. Howes, G. J. 1985. A revised synonymy of the minnow genus Phoxinus Rafinesque, 1820 (Teleostei: Cyprinidae) with comments on its relationships and distribution. Bulletin of the British Museum of Natural History (Zoology) 48:57-74.
18. Hubbs, C. L., and K. F. Lagler. 1949. Fishes of the Great Lakes Region. Cranbrook Institute of Science, Bulletin Number 26.
19. Huelsenbeck, J. P., and D. M. Hillis. 1993. Success of phylogenetic methods in the four taxon case. Systematic Biology 42:247-264.
20. Huelsenbeck, J. P., and F. R. Ronquist. 2001. MRBAYES: Bayesian inference of phylogeny. Bioinformatics 17:154-155.
21. Jordan, D. S. 1924. Concerning the American dace allied to the genus Leuciscus. Copeia 1924:70-72.
22. Joswiak, G. R. 1980. Genetic divergence within a genus of cyprinid fish (Phoxinus: Cyprinidae). Unpubl. Ph.D. diss., Wayne State University, Detroit, Michigan.
23. Jukes, T. H., and C. R. Cantor. 1969. Evolution of protein molecules, p. 21-123. In: Mammalian Protein Metabolism. H. Munro (ed.). Academic Press, New York.
24. Kocher, T. D., W. Thomas, A. Meyer, S. V. Edwards, F. X. Pallablanca, and A. C. Wilson. 1989. Dynamics of mitochondrial DNA evolution in animals: amplification and sequencing with conserved primers. Proceedings of the National Academy of Sciences of the United States of America 86:6196-6200.
25. Koster, W. J. 1957. Guide to the Fishes of New Mexico. University of New Mexico Press, Albuquerque, New Mexico.
26. Legendre, P. 1970. The bearing of Phoxinus (Cyprinidae) hybridity on the classification of its North American species. Canadian Journal of Zoology 48:1167-1177.
27. Leviton, A. E., and R. H. Gibbs, Jr. 1988. Standards in herpetology and ichthyology. Standard symbolic codes for institution resource collections in herpetology and ichthyology. Supplement No. 1: additions and corrections. Copeia 1988:280-282.
28. Leviton, A. E., R. H. Gibbs, Jr., E. Heal, and C. E. Dawson. 1985. Standards in herpetology and ichthyology: part I. Standard symbolic codes for institutional resource collections in herpetology and ichthyology. Copeia 1985:802-832.
29. Mayden, R. L. 1992. An emerging revolution in comparative biology and the evolution of North American freshwater fishes, p. 865-890. In: Systematics, Historical Ecology, and North American Freshwater Fishes. R. L. Mayden (ed.). Stanford University Press, Stanford, California.
30. Mayden, R. L., A. M. Simons, R. M. Wood, P. M. Harris, and B. R. Kuhajda. 2006. Molecular systematics and classification of North American notropin shiners and minnows (Cypriniformes: Cyprinidae), p. 72-101. In: Studies of North American Desert Fishes in Honor of E. P. (Phil) Pister, Conservationist. M. D. L. Lozano-Vilano and A. J. Contreras-Balderas (eds.). Universidad Autonoma de Nuevo Leon, Mexico.
31. Pflieger, W. L. 1971. A distributional study of Missouri fishes. University of Kansas Museum of Natural History Publication 20:225-570.
32. Posada, D., and K. A. Crandall. 1998. MODELTEST: testing the model of DNA substitution. Bioinformatics 14:817-818.
33. Robison, H. W., and T. M. Buchanan. 1988. Fishes of Arkansas. University of Arkansas Press, Fayetteville, Arkansas.
34. Sakai, H., Y. Ito, S. V. Shedko, S. N. Safronov, S. V. Frolov, I. A. Chereshnev, S. R. Jeon, and A. Goto. 2006. Phylogenetic and taxonomic relationships of northern far eastern phoxinin minnows, Phoxinus and Rhynchocypris (Pisces, Cyprinidae), as inferred from allozyme and mitochondrial 16s rRNA sequence analyses. Zoological Science 23:323-331.
35. Schmidt, T. R., and J. R. Gold. 1993. Complete sequence of the mitochondrial cytochrome b gene in the cherryfin shiner Lythrurus roseipinnis (Teleostei: Cyprinidae). Copeia 1993:880-883.
36. Scott, W. B., and E. J. Crossman. 1973. Freshwater fishes of Canada. Fisheries Research Board of Canada Bulletin 184:1-966.
37. Simons, A. M., P. B. Berendzen, and R. L. Mayden. 2003. Molecular systematics of North American phoxinin genera (Actinopterygii: Cyprinidae) inferred from mitochondrial 12S and 16S ribosomal RNA sequences. Zoological Journal of the Linnaean Society 139:63-80.
38. Simons, A. M., and R. L. Mayden. 1998. Phylogenetic relationships of the western North American phoxinins (Actinopterygii: Cyprinidae) as inferred from mitochondrial 12S and 16S ribosomal RNA sequences. Molecular Phylogenetics and Evolution 9:308-329.
39. Skelton, C. E. 2001. New dace of the genus Phoxinus (Cyprinidae: Cypriniformes) from the Tennessee River drainage, Tennessee. Copeia 2001:118-128.
40. Sloss, B. L., N. Billington, and B. M. Burr. 2004. A molecular phylogeny of the Percidae (Teleostei, Perciformes) based on mitochondrial DNA sequence. Molecular Phylogenetics and Evolution 32:545-562.
41. Starnes, W. C., and R. E. Jenkins. 1988. A new cyprinid fish of the genus Phoxinus (Pisces: Cypriniformes) from the Tennessee drainage with comments on relationships and biogeography. Proceedings of the Biological Society of Washington 101:517-529.
42. Starnes, W. C., and L. B. Starnes. 1978. A new cyprinid of the genus Phoxinus endemic to the upper Cumberland River drainage. Copeia 1978:508-516.
43. Strange, R. M., and B. M. Burr. 1997. Intraspecific phylogeography of North American highland fishes: a test of the Pleistocene vicariance hypothesis. Evolution 51:885-897.
44. Strimmer, K., and A. von Haeseler. 1996. Quartet puzzling: a quartet maximum likelihood method for reconstructing tree topologies. Molecular Biology and Evolution 13:964-969.
45. *and other methods). version 4.0b10. Sinauer Associates, Sunderland, Massachusetts.
46. Thompson, J. D., T. J. Gibson, F. Plewniak, F. Jeanmougin, and D. G. Higgins. 1997. The ClustalX windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Research 25:4876-4882.
47. Wiley, E. O., and R. L. Mayden. 1985. Species and speciation in phylogenetic systematics, with examples from the North American fish fauna. Annals of the Missouri Botanical Gardens 72:596-635.
48. Xia, X., and Z. Xie. 2001. DAMBE: Data analysis in molecular biology and evolution. Journal of Heredity 92:371-373.
49. Xia, X., Z. Xie, M. Salemi, L. Chen, and Y. Wang. 2002. An index of substitution saturation and its application. Molecular Phylogenetics and Evolution 26:1-7.
50. Zardoya, R., and I. Doadrio. 1999. Molecular evidence on the evolutionary and biogeographical patterns of European cyprinids. Journal of Molecular Evolution 49: 227-237.