Molecular systematics of North American phoxinin genera (Actinopterygii: Cyprinidae) inferred from mitochondrial 12S and 16S ribosomal RNA sequences

Zoological Journal of the Linnean Society

Volumn 139, Issue 1, 2003, Pages 63-80

  Simons, Andrew M ^a   Berendzen, Peter B ^a   Mayden, Richard L ^b  

^a UNIVERSITY OF MINNESOTA   (United States)

^b SAINT LOUIS UNIVERSITY   (United States)

Author keywords

Bayesian estimation; Evolution; Maximum likelihood; Parsimony

Indexed keywords

ACTINOPTERYGII; CYPRINIDAE; CYPRINIFORMES; LEUCISCUS CEPHALUS; SEMOTILUS ATROMACULATUS;

EID: 0141819297     PISSN: 00244082     EISSN: None     Source Type: Journal    
DOI: 10.1046/j.1096-3642.2003.00076.x     Document Type: Article

References (61)

1. Bailey RM. 1951. A check-list of the fishes of Iowa, with keys for identification. In: Harlan JR, Speaker EB, eds. Iowa fish and fishing. Des Moines: Iowa State Conservation Commission, 187-238.
2. Bailey RM. 1956. A revised list of the fishes of Iowa, with keys for identification. In: Harlan JR, Speaker EB, eds. Iowa fish and fishing. Des Moines: Iowa State Conservation Commission, 187-238.
3. Bailey RM, Gosline WA. 1955. Variation and systematic significance of vertebral counts in the American fishes of family Percidae. Miscellaneous Publications, Museum of Zoology. University of Michigan 93: 1-44.
4. Bailey RM, Winn HE, Smith CL. 1954. Fishes from the Escambia River, Alabama and Florida, with ecologic and taxonomic notes. Proceedings of the Academy of Natural Sciences of Philadelphia 106: 109-154.
5. Bielawski JP, Gold JR. 2001. Phylogenetic relationships of cyprinid fishes in subgenus Notropis inferred from nucleotide sequences of the mitochondrially encoded cytochrome b gene. Copeia 2001: 656-667.
6. Broughton RE, Gold JR. 2000. Phylogenetic relationships in the North American cyprinid genus Cyprinella (Actinopterygii: Cyprinidae) based on sequences of the mitochondrial ND2 and ND4L genes. Copeia 2000: 1-10.
7. Cavender TM, Coburn MM. 1992. Phylogenetic relationships of North American cyprinids. In: Mayden RL, ed. Systematics, historical ecology, and North American freshwater fishes. Stanford: Stanford University Press, 293-327.
8. Coburn MM. 1982. Anatomy and relationships of Notropis atherinoides. Unpublished PhD Thesis, Ohio State University.
9. Coburn MM, Cavender TM. 1992. Interrelationships of North American cyprinid fishes. In: Mayden RL, ed. Systematics, historical ecology, and North American freshwater fishes. Stanford: Stanford University Press, 328-373.
10. De Rijk P, Van de Peer Y, Chapelle S, Ed Wachter R. 1994. Database on the structure of large ribosomal subunit RNA. Nucleic Acids Research 22: 3495-3501.
11. Dimmick WW. 1993. A molecular perspective on the phylogenetic relationships of the barbeled minnows, historically assigned to the genus Hybopsis (Cyprinidae: Cypriniformes). Molecular Phylogenetics and Evolution 2: 173-184.
12. Dowling TE, Naylor GJP. 1997. Evolutionary relationships of minnow in the genus Luxilus (Teleostei: Cyprinidae) as determined from cytochrome b sequences. Copeia 1997: 758-765.
13. Dowling TE, Tibbets CA, Minckley WL, Smith GR. 2002. Evolutionary relationships of the plagopterins (Teleostei: Cyprinidae) from cytochrome b sequences. Copeia 2002: 665-678.
14. Etnier DA, Starnes WC. 1993. The fishes of Tennessee. Knoxville: The University of Tennessee Press.
15. Farris JS, Källersjö M, Kluge AG, Bult C. 1994. Testing significance of incongruence. Cladistics 10: 315-319.
16. Fletcher DE, Burr BM. 1992. Reproductive biology, larval description, and diet of the North American bluehead shiner, Pteronotropis hubbsi (Cypriniformes: Cyprinidae), with comments on conservation status. Ichthyological Exploration of Freshwaters 3: 193-218.
17. Fletcher DE, Burr BM. 1993. Nest association of dusky shiners (Notropis cummingsae) and redbreast sunfish (Lepomis auritus), a potentially parasitic relationship. Copeia 1993: 159-167.
18. Girard C. 1856. Research upon the cyprinoid fishes inhabiting the freshwaters of the United States, west of the Mississippi valley, from specimens in the museum of the Smithsonian Institution. Proceedings of the Academy of Natural Sciences of Philadelphia 8: 165-213.
19. Graybeal A. 1998. Is it better to add taxa or characters to a difficult phylogenetic problem? Systematic Biology 47: 9-17.
20. Hillis DM. 1998. Taxonomic sampling, phylogenetic accuracy, and investigator bias. Systematic Biology 47: 3-8.
21. Hubbs CL, Lagler KF. 1958. Fishes of the Great Lakes regions. Ann Arbor: University of Michigan Press.
22. Hubbs CL, Miller RR. 1977. Six distinctive cyprinid fish species referred to Dionda inhabiting segments of the Tampico embayment drainage of Mexico. Transactions of the San Diego Society of Natural History 18: 267-336.
23. Huelsenbeck JP, Hillis DM. 1993. Success of phylogenetic methods in the four-taxon case. Systematic Biology 42: 247-264.
24. Huelsenbeck JP, Ronquist FR. 2001. MRBAYES: Bayesian inference of phylogeny. Bioinformatics 17: 154-155.
25. Hull DL. 1988. Science as a process: an evolutionary account of the social and conceptual development of science. Chicago: The University of Chicago Press.
26. Hunter JR, Hasler AD. 1965. Spawning association of the redfin shiner, Notropis umbratilis, and the green sunfish, Lepomis cyanellus. Copeia 1965: 265-281.
27. Jenkins RE, Burkhead NM. 1993. Freshwater fishes of Virginia. Bethesda: American Fisheries Society.
28. Jenkins RE, Lachner EA. 1971. Criteria for analysis and interpretation of the American fish genera Nocomis Girard and Hybopsis Agassiz. Smithsonian Contributions to Zoology 90: 1-15.
29. Johnston CE, Page LM. 1992. The evolution of complex reproductive strategies in North American minnows (Cyprinidae). In: Mayden RL, ed. Systematics, historical ecology, and North American freshwater fishes. Stanford: Stanford University Press, 600-621.
30. Jordan DS. 1924. Concerning the genus Hybopsis of Agassiz. Copeia 1924: 51-52.
31. Lachner EA, Jenkins RE. 1967. Systematics, distribution, and evolution of the chub genus Nocomis (Cyprinidae) in the southwestern Ohio River basin, with the description of a new species. Copeia 1967: 557-580.
32. Leviton AE, Gibbs RH. 1988. Standards in herpetology and ichthyology. Standard symbolic codes for institution resource collections in herpetology and ichthyology. Supplement no. 1. Additions and corrections. Copeia 1988: 280-282.
33. Leviton AE, Gibbs RH, Heal E, Dawson CE. 1985. Standards in herpetology and ichthyology. Part I. Standard symbolic codes for institutional resource collections in herpetology and ichthyology. Copeia 1985: 802-832.
34. Maddison WP, Maddison DR. 2000. MACCLADE: analysis of phylogeny and character evolution, Version 4.0. Sunderland: Sinauer Associates Inc.
35. Mayden RL. 1989. Phylogenetic studies of North American minnows, with emphasis on the genus Cyprinella (Teleostei: Cypriniformes). Miscellaneous Publications, The University of Kansas Museum of Natural History 80: 1-189.
36. Mayden RL. 1991. New World cyprinids. In: Winfield IJ, Nelson JS, eds. Biology of cyprinids. London: Chapman & Hall Ltd, 240-263.
37. Mayden RL, Burr BM. 1992. Phylogenetics and North American freshwater fishes. In: Mayden RL, ed. Systematics, historical ecology, and North American freshwater fishes. Stanford: Stanford University Press, 18-75.
38. Mayden RL, Burr BM, Page LM, Miller RR. 1992. The native freshwater fishes of North America. In: Mayden RL, ed. Systematics, historical ecology, and North American freshwater fishes. Stanford: Stanford University Press, 827-863.
39. McPhail JD, Lindsey CC. 1970. Freshwater fishes of north-western Canada and Alaska. Ottawa: Fisheries Research Board of Canada. Bulletin 173.
40. Miller RR, Hubbs CL. 1960. The spiny-rayed cyprinid fishes (Plagopterini) of the Colorado river system. Miscellaneous Publications Museum of Zoology, University of Michigan 115: 1-39.
41. Nelson JS. 1994. Fishes of the world. New York: John Wiley & Sons Inc.
42. Page LM, Burr BM. 1991. A field guide to freshwater fishes: North America north of Mexico. Boston: Houghton Mifflin Company.
43. Posada D, Crandall KA. 1998. Modeltest: testing the model of DNA substitution. Bioinformatics 14: 817-275.
44. Posada D, Crandall KA. 2001. Selecting the best fit model of nucleotide substitution. Systematic Biology 50: 580-601.
45. Rafinesque CS. 1818. Description of two new genera of North American fishes, Opsanus, and Notropis. The American Monthly Magazine and Critical Review 2: 203-204.
46. Raley ME, Wood RM. 2001. Molecular systematics of members of the Notropis dorsalis species group (Actinopterygii: Cyprinidae). Copeia 2001: 638-645.
47. Schmidt TR, Bielawski JP, Gold JR. 1998. Molecular phylogenetics and evolution of the cytochrome b gene in the cyprinid genus Lythrurus (Actinopterygii: Cypriniformes). Copeia 1998: 14-22.
48. Scott WB, Crossman EJ. 1973. Freshwater fishes of Canada. Fisheries Research Board of Canada. Bulletin 184.
49. Sigler WF, Sigler JW. 1996. Fishes of Utah. Salt Lake City: University of Utah Press.
50. Simons AM, Knott KE, Mayden RL. 2000. Assessment of monophyly of the minnow genus Pteronotropis (Teleostei: Cyprinidae). Copeia 2000: 1068-1075.
51. Simons AM, Mayden RL. 1997. The phylogenetic relationships of the Creek Chubs and Spinefins: an enigmatic group of North American cyprinid fishes (Actinopterygii: Cyprinidae). Cladistics 13: 187-205.
52. Simons AM, Mayden RL. 1998. Phylogenetic relationships of the western North American phoxinins (Actinopterygii: Cyprinidae) as inferred from mitochondrial 12S and 16S ribosomal RNA sequences. Molecular Phylogenetics and Evolution 9: 308-329.
53. Simons AM, Mayden RL. 1999. Phylogenetic relationships of North American Cyprinids and assessment of homology of the open posterior myodome. Copeia 1999: 13-21.
54. Soltis DE, Soltis PS, Mort ME, Chase MW, Savolaine V, Hoot SB, Morton CM. 1998. Inferring complex phylogenies using parsimony: an empirical approach using three large DNA data sets for angiosperms. Systematic Biology 47: 32-42.
55. Swofford DL. 2000. PAUP*: phylogenetic analysis using parsimony (*and other methods). Sunderland: Sinauer Associates.
56. Swofford DL, Waddell PJ, Huelsenbeck JP, Foster PG, Lewis PO, Rogers JS. 2001. Bias in phylogenetic estimation and its relevance to the choice between parsimony and likelihood methods. Systematic Biology 50: 525-539.
57. Thompson JD, Higgins DG, Gibson TJ. 1994. Clustal W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position specific gap penalties and weight matrix choice. Nucleic Acids Research 22: 4673-4680.
58. Uyeno T. 1961. Osteology and phylogeny of the American cyprinid fishes allied to the genus Gila. Unpublished PhD Dissertation, University of Michigan.
59. Van de Peer Y, Van den Brock I, De Rijk P, De Wachter R. 1994. Database on the structure of small ribosomal subunit RNA. Nucleic Acids Research 22: 3488-3494.
60. Woodman DA. 1992. Systematic relationships within the cyprinid genus Rhinichthys. In: Mayden RL, ed. Systematics, historical ecology, and North American freshwater fishes. Stanford: Stanford University Press, 374-391.
61. Zwickl DJ, Hillis DM. 2002. Increased taxon sampling greatly reduces phylogenetic error. Systematic Biology 51: 588-598.