Using Trawler-standalone to discover overrepresented motifs in DNA and RNA sequences derived from various experiments including chromatin immunoprecipitation

Nature Protocols

Volumn 5, Issue 2, 2010, Pages 323-334

  Haudry, Yannick ^a,c   Ramialison, Mirana ^a,c   Paten, Benedict ^b   Wittbrodt, Joachim ^a,c,d   Ettwiller, Laurence ^a,c  

^a EUROPEAN MOLECULAR BIOLOGY LABORATORY   (Germany)

^b University of California Santa Cruz   (United States)

^c UNIVERSITY OF HEIDELBERG   (Germany)

^d KARLSRUHE INSTITUTE OF TECHNOLOGY   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; CHROMATIN IMMUNOPRECIPITATION; CLUSTER ANALYSIS; COMPUTER PROGRAM; DATA ANALYSIS SOFTWARE; DNA SEQUENCE; GENE REGULATORY NETWORK; GENOME ANALYSIS; GENOME WIDE ANALYSIS; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; PROTEIN MOTIF; RNA SEQUENCE;

AMINO ACID MOTIFS; BASE SEQUENCE; CHROMATIN; CLUSTER ANALYSIS; DNA; GENE EXPRESSION REGULATION; INTERNET; REPETITIVE SEQUENCES, NUCLEIC ACID; RNA;

EID: 76649138607     PISSN: 17542189     EISSN: 17502799     Source Type: Journal    
DOI: 10.1038/nprot.2009.158     Document Type: Article

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