-
1
-
-
0347125328
-
JASPAR: An open-access database for eukaryotic transcription factor binding profiles
-
Sandelin,A., Alkema,W., Engstrom,P., Wasserman,W.W. and Lenhard,B. (2004) JASPAR: An open-access database for eukaryotic transcription factor binding profiles. Nucleic Acids Res., 32, D91-D94.
-
(2004)
Nucleic Acids Res.
, vol.32
-
-
Sandelin, A.1
Alkema, W.2
Engstrom, P.3
Wasserman, W.W.4
Lenhard, B.5
-
2
-
-
2642572859
-
TRANSFAC, TRANSPATH and CYTOMER as starting points for an ontology of regulatory networks
-
Wingender,E. (2004) TRANSFAC, TRANSPATH and CYTOMER as starting points for an ontology of regulatory networks. In Silico Biol., 4, 55-61.
-
(2004)
In Silico Biol.
, vol.4
, pp. 55-61
-
-
Wingender, E.1
-
3
-
-
0028685490
-
Fitting a mixture model by expectation maximization to discover motifs in biopolymers
-
Bailey,T.L. and Elkan,C. (1994) Fitting a mixture model by expectation maximization to discover motifs in biopolymers. Proc. Int. Conf. Intell. Syst. Mol. Biol., 2, 28-36.
-
(1994)
Proc. Int. Conf. Intell. Syst. Mol. Biol.
, vol.2
, pp. 28-36
-
-
Bailey, T.L.1
Elkan, C.2
-
5
-
-
8644232564
-
Progress and challenges in profiling the dynamics of chromatin and transcription factor binding with DNA microarrays
-
Hanlon,S.E. and Lieb,J.D. (2004) Progress and challenges in profiling the dynamics of chromatin and transcription factor binding with DNA microarrays. Curr. Opin. Genet. Dev., 14, 697-705.
-
(2004)
Curr. Opin. Genet. Dev.
, vol.14
, pp. 697-705
-
-
Hanlon, S.E.1
Lieb, J.D.2
-
6
-
-
0345099564
-
Identifying cooperativity among transcription factors controlling the cell cycle in yeast
-
Banerjee,N. and Zhang,M.Q. (2003) Identifying cooperativity among transcription factors controlling the cell cycle in yeast. Nucleic Acids Res., 31, 7024-7031.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 7024-7031
-
-
Banerjee, N.1
Zhang, M.Q.2
-
7
-
-
13844275301
-
Similarity of position frequency matrices for transcription factor binding sites
-
Schones,D.E., Sumazin,P. and Zhang,M.Q. (2005) Similarity of position frequency matrices for transcription factor binding sites. Bioinformatics, 21, 307-313.
-
(2005)
Bioinformatics
, vol.21
, pp. 307-313
-
-
Schones, D.E.1
Sumazin, P.2
Zhang, M.Q.3
-
8
-
-
1842505125
-
Constrained binding site diversity within families of transcription factors enhances pattern discovery bioinformatics
-
Sandelin,A. and Wasserman,W.W. (2004) Constrained binding site diversity within families of transcription factors enhances pattern discovery bioinformatics. J. Mol. Biol., 338, 207-215.
-
(2004)
J. Mol. Biol.
, vol.338
, pp. 207-215
-
-
Sandelin, A.1
Wasserman, W.W.2
-
9
-
-
0036108622
-
A Gibbs sampling method to detect overrepresented motifs in the upstream regions of coexpressed genes
-
Thijs,G., Marchal,K., Lescot,M., Rombauts,S., De Moor,B., Rouze,P. and Moreau,Y. (2002) A Gibbs sampling method to detect overrepresented motifs in the upstream regions of coexpressed genes. J. Comput. Biol., 9, 447-464.
-
(2002)
J. Comput. Biol.
, vol.9
, pp. 447-464
-
-
Thijs, G.1
Marchal, K.2
Lescot, M.3
Rombauts, S.4
De Moor, B.5
Rouze, P.6
Moreau, Y.7
-
10
-
-
1842433988
-
Computational detection of cis -regulatory modules
-
Aerts,S., Van Loo,P., Thijs,G., Moreau,Y. and De Moor,B. (2003) Computational detection of cis -regulatory modules. Bioinformatics, 19 (Suppl. 2), II5-II14.
-
(2003)
Bioinformatics
, vol.19
, Issue.SUPPL. 2
-
-
Aerts, S.1
Van Loo, P.2
Thijs, G.3
Moreau, Y.4
De Moor, B.5
-
11
-
-
2942558697
-
On the power of profiles for transcription factor binding site detection
-
article 7
-
Rahmann,S., Müller,T. and Vingron,M. (2003) On the power of profiles for transcription factor binding site detection. Statist. Appl. Genet. Mol. Biol., 2 article 7.
-
(2003)
Statist. Appl. Genet. Mol. Biol.
, vol.2
-
-
Rahmann, S.1
Müller, T.2
Vingron, M.3
-
12
-
-
0032945593
-
DIALIGN 2: Improvement of the segment-to-segment approach to multiple sequence alignment
-
Morgenstern,B. (1999) DIALIGN 2: Improvement of the segment-to-segment approach to multiple sequence alignment. Bioinformatics, 15, 211-218.
-
(1999)
Bioinformatics
, vol.15
, pp. 211-218
-
-
Morgenstern, B.1
-
13
-
-
0003409775
-
TESS: Transcription Element Search Software on the WWW Technical Report CBIL-TR-1997-1001-v0.0
-
Computational Biology and Informatics Laboratory School of Medicine University of Pennsylvania
-
Schug,J. and Overton,G.C. (1997) TESS: Transcription Element Search Software on the WWW Technical Report CBIL-TR-1997-1001-v0.0. Computational Biology and Informatics Laboratory School of Medicine University of Pennsylvania.
-
(1997)
-
-
Schug, J.1
Overton, G.C.2
-
14
-
-
0029961701
-
The GA-binding protein can serve as both an activator and repressor of ribosomal protein gene transcription
-
Genuario,R.R. and Perry,R.P. (1996) The GA-binding protein can serve as both an activator and repressor of ribosomal protein gene transcription. J. Biol. Chem., 271, 4388-4395.
-
(1996)
J. Biol. Chem.
, vol.271
, pp. 4388-4395
-
-
Genuario, R.R.1
Perry, R.P.2
-
15
-
-
0034819935
-
A predictive model for regulatory sequences directing liver-specific transcription
-
Krivan,W. and Wasserman,W.W. (2001) A predictive model for regulatory sequences directing liver-specific transcription. Genome Res., 11, 1559-1566.
-
(2001)
Genome Res.
, vol.11
, pp. 1559-1566
-
-
Krivan, W.1
Wasserman, W.W.2
-
16
-
-
0036429011
-
In vitro selection of specific RNA inhibitors of NFATc
-
Bae,S.J., Oum,J.H., Sharma,S., Park,J. and Lee,S.W. (2002) In vitro selection of specific RNA inhibitors of NFATc. Biochem. Biophys. Res. Commun., 298, 486-492.
-
(2002)
Biochem. Biophys. Res. Commun.
, vol.298
, pp. 486-492
-
-
Bae, S.J.1
Oum, J.H.2
Sharma, S.3
Park, J.4
Lee, S.W.5
-
17
-
-
0031741736
-
Identification of DNA recognition sequences and protein interaction domains of the multiple-Zn-finger protein Roaz
-
Tsai,R.Y. and Reed,R.R. (1998) Identification of DNA recognition sequences and protein interaction domains of the multiple-Zn-finger protein Roaz. Mol. Cell. Biol., 18, 6447-6456.
-
(1998)
Mol. Cell. Biol.
, vol.18
, pp. 6447-6456
-
-
Tsai, R.Y.1
Reed, R.R.2
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