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For a description of the biological assays, see:. Herberich B., Cao G.-Q., Chakrabarti P.P., Falsey J.R., Pettus L., Rzasa R.M., Reed A.B., Reichelt A., Sham K., Thaman M., Wurz R.P., Xu S., Zhang D., Hsieh F., Lee M.R., Syed R., Li V., Grosfeld D., Plant M.H., Henkle B., Sherman L., Middleton S., Wong L.M., and Tasker A.S. J. Med. Chem. 51 (2008) 6271
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76649086733
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note
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The compounds were tested in the PXR luciferase reporter gene assay using HepG2 cells transfected with a luciferase reporter construct driven by human CYP3A4 gene and human PXR cDNA. The incubation duration was 24 h.
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26
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76649108965
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note
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The X-ray coordinates have been deposited in the RCSB Protein Data Bank database (RCSB ID code: RCSB054861 and PDB ID code: 3ITZ). We also thank the Advanced Light Source staff at beamline 5.0.2 for their support. The Advanced Light Source is supported by the Director, Office of Science, Office of Basic Energy Sciences, Materials Sciences Division, of the U.S. Department of Energy under Contract DE-AC03-76SF00098 at Lawrence Berkeley National Laboratory.
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Angell R.M., Angell T.D., Bamborough P., Bamford M.J., Chung C.-w., Cockerill S.G., Flack S.S., Jones K.L., Laine D.I., Longstaff T., Ludbrook S., Pearson R., Smith K.J., Smee P.A., Somers D.O., and Walker A.L. Bioorg. Med. Chem. Lett. 18 (2008) 4433
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76649137320
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note
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50 = 5.4 μM). The plasma protein binding (determined by ultrafiltration methods) was measured in four species: rat, human, cynomolgus monkey, and mouse and found to be 97.1%, 97.3%, 97.6% and 96.7% protein bound, respectively.
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19744365702
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note
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Assays were performed by Ambit Biosciences (San Diego, CA: http://www.ambitbio.com/) utilizing KINOMEscan. Activity is recorded via a competition binding assay of selected kinases that are fused to a proprietary tag. Measurements of the amount of kinase bound to an immobilized, active-site directed ligand in the presence and absence of the test compound provide a% of DMSO control for binding of ligand. For more information on this method, see: Fabian, M. A.; Biggs III, W. H.; Treiber, D. K.; Atteridge, C. E.; Azimioara, M. D.; Benedetti, M. G.; Carter, T. A.; Ciceri, P.; Edeen, P. T.; Floyd, M.; Ford, J. M.; Galvin, M.; Gerlach, J. L.; Grotzfeld, R. M.; Herrgard, S.; Insko, D. E.; Insko, M. A.; Lai, A. G.; Lélias, J.-M.; Mehta, S. A.; Milanov, Z. V.; Velasco, A. M.; Wodicka, L. M.; Patel, H. K.; Zarrinkar P. P.; Lockhart, D. J. Nat. Biotechnol. 2005, 23, 329. Compound 2m was screened at 1 μM and considered active if <30% of binding to immobilized probes remained compared to DMSO control.
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