Biochemical interactions between proteins and mat1 cis-acting sequences required for imprinting in fission yeast

Molecular and Cellular Biology

Volumn 24, Issue 22, 2004, Pages 9813-9822

  Lee, Bum Soo ^a   Grewal, Shiv I S ^a,b   Klar, Amar J S ^a  

^a NATIONAL CANCER INSTITUTE   (United States)

^b NATIONAL CANCER INSTITUTE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CIS ACTING ELEMENT; PROTEIN SWI; TRANS ACTING FACTOR;

ARTICLE; DNA PROTEIN COMPLEX; DNA RECOMBINATION; DNA REPLICATION; DNA SEQUENCE; FUNGAL STRAIN; GENE IDENTIFICATION; GENE MAPPING; GENE MUTATION; GENE SWITCHING; GENETIC SCREENING; GENOME IMPRINTING; MATING TYPE; MOLECULAR CLONING; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; PROTEIN DNA BINDING; PROTEIN INTERACTION; SCHIZOSACCHAROMYCES POMBE; YEAST;

AMINO ACID SEQUENCE; BASE SEQUENCE; BINDING SITES; DNA REPLICATION; DNA, FUNGAL; DNA-BINDING PROTEINS; GENES, FUNGAL; GENES, MATING TYPE, FUNGAL; GENOMIC IMPRINTING; MACROMOLECULAR SUBSTANCES; MOLECULAR SEQUENCE DATA; MUTATION; SCHIZOSACCHAROMYCES; SCHIZOSACCHAROMYCES POMBE PROTEINS;

FUNGI; INVERTEBRATA; MYXOGASTRIA; SCHIZOSACCHAROMYCES; SCHIZOSACCHAROMYCES POMBE;

EID: 7644244870     PISSN: 02707306     EISSN: None     Source Type: Journal    
DOI: 10.1128/MCB.24.22.9813-9822.2004     Document Type: Article

References (42)

1. Ahmed, S., S. Saini, S. Arora, and J. Singh. 2001. Chromodomain protein Swi6-mediated role of DNA polymerase alpha in establishment of silencing in fission yeast. J. Biol. Chem. 276:47814-47821.
2. Arcangioli, B. 1998. A site- and strand-specific DNA break confers asymmetric switching potential in fission yeast. EMBO J. 17:4503-4510.
3. Arcangioli, B., T. D. Copeland, and A. J. S. Klar. 1994. Sap1, a protein that binds to sequences required for mating-type switching, is essential for viability in Schizosaccharomyces pombe. Mol. Cell. Biol. 14:2058-2065.
4. Arcangioli, B., and A. J. S. Klar. 1991. A novel switch-activating site (SAS1) and its cognate binding factor (Sap1) required for efficient mat1 switching in Schizosaccharomyces pombe. EMBO J. 10:3025-3032.
5. Bahler, J., J.-Q. Wu, M. S. Longtine, N. G. Shah, A. McKenzie III, A. B. Steever, A, Wach, P. Philippsen, and J. R. Pringle. 1998. Heterologous modules for efficient and versatile PCR-based gene targeting in Schizosaccharomyces pombe. Yeast 14:943-951.
6. Beach, D. H. 1983. Cell type switching by DNA transposition in fission yeast. Nature 305:682-687.
7. Beach, D. H., and A. J. S. Klar. 1984. Rearrangements of the transposable mating-type cassettes of fission yeast. EMBO J. 3:603-610.
8. Chan, R. C., A. Chan, M. Jeon, T. F. Wu, D. Pasqualone, A. E. Rougvie, and J. Meyer. 2003. Chromosome cohesion is regulated by a clock gene paralogue TIM-1. Nature 423:1002-1009.
9. Clayton, J. D., C. P. Kyriacou, and S. M. Reppert. 2001. Keeping time with the human genome. Nature 409:829-831.
10. Codlin, S., and J. Z. Dalgaard. 2003. Complex mechanism of site-specific DNA replication termination in fission yeast. EMBO J. 22:3431-3440.
11. Dalgaard, J. Z., and A. J. S. Klar. 2001. A DNA replication-arrest site RTS1 regulates imprinting by determining the direction of replication at mat1 in S. pombe. Genes Dev. 15:2060-2068.
12. Dalgaard, J. Z., and A. J. S. Klar. 2001. Does S. pombe exploit the intrinsic asymmetry of DNA synthesis to imprint daughter cells for mating-type switching? Trends Genet. 17:153-157.
13. Dalgaard, J. Z., and A. J. S. Klar. 1999. Orientation of DNA replication establishes mating-type switching pattern in S. pombe. Nature 400:181-184.
14. Dalgaard, J. Z., and A. J. S. Klar. 2000. swi1 and swi3 perform imprinting, pausing, and termination of DNA replication in S. pombe. Cell 102:745-751.
15. de Lahondes, R., V. Ribes, and B. Arcangioli. 2003. Fission yeast Sap1 protein is essential for chromosome stability. Eukaryot. Cell 2:910-921.
16. Egel, R., D. H. Beach, and A. J. S. Klar. 1984. Genes required for initiation and resolution steps of mating-type switching in fission yeast. Proc. Natl. Acad. Sci. USA 81:3481-3485.
17. Egel, R., and B. Eie. 1987. Cell lineage asymmetry in Schizosaccharomyces pombe: Unilateral transmission of a high frequency state of mating-type switching in diploid pedigrees. Curr. Genet. 12:429-433.
18. Egel, R., J. Kohli, P. Thuriaux, and K. Wolf. 1980. Genetics of the fission yeast Schizosaccharomyces pombe. Annu. Rev. Genet. 14:77-108.
19. Ekwall, K., and J. F. Partridge. 1999. Fission yeast chromosome analysis: fluorescence in-situ hybridization (FISH) and chromatin immunoprecipitation (CHIP), p. 47-57. In W. A. Bickmore (ed.), Chromosome structural analysis: a practical approach. Oxford University Press, Oxford, United Kingdom.
20. Gietz, D., A. S. Jean, R. A. Woods, and R. H. Schiestl, 1992. Improved method for high efficiency transformation of intact yeast cells. Nucleic Acids Res. 20:1425.
21. Gotter, A. L. 2003. Tipin, a novel timeless-interacting protein, is developmentally coexpressed with Timeless and disrupts its self-association. J. Mol. Biol. 331:167-176.
22. Gutz, H., and H. Schmidt. 1985. Switching genes in Schizosaccharomyces pombe. Curr. Genet. 9:325-331.
23. Kaykov, A., A. M. Holmes, and B. Arcangioli. 2004. Formation, maintenance and consequences of the imprint at the mating-type locus in fission yeast. EMBO J. 23:930-938.
24. Kelly, M., J. Burke, A. J. S. Klar, and D. Beach. 1988. Four mating-type genes control sexual differentiation in the fission yeast. EMBO J. 7:1537-1547.
25. Keys, D. A., B.-S. Lee, J. A. Dodd, T. T. Nguyen, L. Vu, E. Fantino, L. M. Burson, Y. Nogi, and M. Nomura. 1996. Multiprotein transcription factor UAF interacts with the upstream element of the yeast RNA polymerase I promoter and forms a stable preinitiation complex. Genes Dev. 10:887-903.
26. Klar, A. J. S. 2001. Differentiated parental DNA chain causes stem cell pattern of cell-type switching in Schizosaccharomyces pombe, p 17-36. In D. R. Marshak, R. L. Gardner, and D. Gottlieb (ed.), Stem cell biology. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y.
27. Klar, A. J. S. 1987. Differentiated parental DNA strands confer developmental asymmetry on daughter cells in fission yeast. Nature 326:466-470.
28. Klar, A. J. S. 1990. The developmental fate of fission yeast cells is determined by the pattern of inheritance of parental and grandparental DNA strands. EMBO J. 9:1407-1415.
29. Klar, A. J. S., and M. J. Bonaduce. 1993. The mechanism of fission yeast mating-type interconversions: evidence for two types of epigenetically inherited chromosomal imprinted events. Cold Spring Harb. Symp. Quant. Biol. 58:457-465.
30. Klar, A. J. S., and L. M. Miglio. 1986. Initiation of meiotic recombination by double-strand DNA breaks in S. pombe. Cell 46:725-731.
31. Laemmli, U. K. 1970. Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature 227:680-685.
32. Lee, B.-S., and M. R. Culbertson. 1995. Identification of an additional gene required for eukaryotic nonsense mRNA turnover. Proc. Natl. Acad. Sci. USA 92:10354-10358.
33. Leupold, U. 1950. Die vererbung von homothallie and heterothallie bei Schizosaccharomyces pombe. CR. Trav. Lab. Carlsberg Ser. Physiol. 24:381-480.
34. Miyata, H., and M. Miyata. 1981. Mode of conjugation in homothallic cells of Schizosaccharomyces pombe. J. Gen. Appl. Microbiol. 27:365-371.
35. Moreno, S. A., A. J. S. Klar, and P. Nurse. 1991. Molecular genetics analysis of fission yeast Schizosaccharomyces pombe. Methods Enzymol. 267:795-823.
36. Nielsen, O., and R. Egel. 1989. Mapping the double-strand breaks at the mating-type locus in fission yeast by genomic sequencing. EMBO J. 8:269-276.
37. Noguchi, E., C. Noguchi, L.-L. Du, and P. Russell. 2003. Swi1 prevents replication fork collapse and controls checkpoint kinase Cds1. Mol. Cell. Biol. 23:7861-7874.
38. Schmidt, H. 1987. Strains of Schizosaccharomyces pombe with a disrupted swi1 gene still show some mating-type switching. Mol. Gen. Genet. 210:485-489.
39. Singh, J., and A. J. S. Klar. 1993. DNA polymerase-α is essential for mating-type switching in fission yeast. Nature 361:271-273.
40. Styrkarsdottir, U., R. Egel, and O. Nielsen. 1993. The smt-0 mutation which abolishes mating-type switching in fission yeast is a deletion. Curr. Genet. 23:184-186.
41. Tan, S., and T. S.-F. Wang. 2000. Analysis of fission yeast primase defines the checkpoint response to aberrant S-phase initiation. Mol. Cell. Biol. 20:7853-7866.
42. Vengrova, S., and J. Z. Dalgaard. 2004. RNase-sensitive DNA modification(s) initiates S. pombe mating-type switching. Genes Dev. 18:794-804.