Association of the stramenopilan protists, the aplanochytrids, with zooplankton of the equatorial Indian Ocean

Marine Ecology Progress Series

Volumn 399, Issue , 2010, Pages 53-68

  Damare, Varada ^a,b   Raghukumar, Seshagiri ^a  

^a NATIONAL INSTITUTE OF OCEANOGRAPHY   (India)

^b UNIVERSITY OF GREIFSWALD   (Germany)

Author keywords

Aplanochytrids; Biotinylated probes; In situ hybridization; Internal transcribed spacer; Labyrinthulomycetes; Stramenopila; Zooplankton

Indexed keywords

DNA; ENZYME ACTIVITY; GENETIC ANALYSIS; PELAGIC ENVIRONMENT; PROTIST; ZOOPLANKTON;

ANIMALIA; APLANOCHYTRIUM YORKENSIS; CHAETOGNATHA; COPEPODA; INVERTEBRATA; LABYRINTHULIDA; PROTISTA; STRAMENOPILES; THRAUSTOCHYTRIIDAE;

EID: 76249098476     PISSN: 01718630     EISSN: None     Source Type: Journal    
DOI: 10.3354/meps08277     Document Type: Article

References (50)

1. Alonzo F, Virtue P, Nicol S, Nichols P (2005) Lipids as trophic markers in Antarctic krill. II. Lipid composition of the body and digestive gland of Euphausia superba in controlled conditions. Mar Ecol Prog Ser 296:65-79 (Pubitemid 41128820)
2. Bahnweg G, Sparrow FK (1972) Aplanochytrium kerguelensis gen. nov. spec. nov., a new phycomycete from subantarctic marine waters. Arch Mikrobiol 81:45-49
3. Bergé JP, Barnathan G (2005) Fatty acids from lipids of marine organisms: molecular biodiversity, roles as biomarkers, biologically active compounds, and economical aspects. Adv Biochem Engin Biotechnol 96:49-125
4. Biegala IC, Not F, Vaulot D, Simon N (2003) Quantitative assessment of picoeukaryotes in the natural environment by using taxon-specific oligonucleotide probes in association with tyramide signal amplification- fluorescence in situ hybridization and flow cytometry. Appl Environ Microbiol 69:5519-5529
5. Bimboim HC, Doly J (1979) A rapid alkaline extraction procedure for screening recombinant plasmid DNA. Nucleic Acids Res 7:1513-1524
6. Boge G, Jean N, Jamet JL (2006) Seasonal changes in phos-66 phatase activities in Toulon Bay (France). Mar Environ Res 61:1-18
7. Bower SM (1987) Labyrinthuloides haliotidis n.sp. (Protozoa: Labyrinthomorpha), a pathogenic parasite of small juvenile abalone in a British Columbia mariculture facility. Can J Zool 65:1996-2007
8. Bower SM, McLean N, Whitaker DJ (1989) Mechanism of infection by Labyrinthuloides haliotidis (Protozoa: Labyrinthomorpha), a parasite of abalone (Haliotis kamtschatkana) (Mollusca: Gastropoda). J Invertebr Pathol 53: 401-409
9. Brown MR (2002) Nutritional value of microalgae for aquculture. In: Cruz-Suárez LE, Ricque-Marie D, Tapia-Salazar M, Gaxiola-Cortés MG, Simoes N (eds) Avances en Nutrición Acuícola VI. Memorias del VI Simposium Internacional de Nutrición Acuícola. 3 al 6 de Septiembre del 2002, Cancún, Universidad Autónoma de Nuevo León, Monterrey, p 281-292
10. Bussolati G, Leonardo E (2008) Technical pitfalls potentially affecting diagnoses in immunohistochemistry. J Clin Pathol 61:1184-1192
11. Cembella AD, Antia NJ, Harrison PJ (1982) The utilization of inorganic and organic phosphorus compounds as nutrients by eukaryotic microalgae: a multidisciplinary perspective. Part I. CRC Crit Rev Microbiol 10:317-391
12. Damare V, Raghukumar S (2006) Morphology and physiology of the marine straminipilan fungi, the aplanochytrids isolated from the equatorial Indian Ocean. Indian J Mar Sci 35:326-340
13. Damare V, Raghukumar S (2008) Abundance of thraustochytrids and bacteria in the equatorial Indian Ocean, in relation to transparent exopolymeric particles (TEPs). FEMS Microbiol Ecol 65:40-49
14. Fell JW, Newell SY (1998) Biochemical and molecular methods for the study of marine fungi. In: Cookse KE (ed) Molecular approaches to the study of the ocean Chapman & Hall Publishers, London, p 259-283
15. Frank U, Rabinowitz C, Rinkevich B (1994) In vitro establishment of continuous cell cultures and cell lines from ten colonial cnidarians. MAr Biol 120:491-499
16. Gambin F, Bogé G, Jamet D (1999) Alkaline phosphatase in a littoral Mediterranean marine ecosystem: role of the main plankton size classes. Mar Environ Res 47:441-456
17. Harel M, Ben-Dov E, Rasoulouniriana D, Siboni N and others (2008) A new thraustochytrid strain Fng1, isolated from the surface mucus of the hermatypic coral Fungia granulose. FEMS Microbiol Ecol 64:378-387
18. Honda D, Yokochi T, Nakahara T, Raghukumar S, Nakagiri A, Schaumann K, Higashihara T (1999) Molecular phylogeny of labyrinthulids and thraustochytrids based on the sequencing of 18S ribosomal RNA gene. J Eukaryot Microbiol 46:637-647
19. Hsu Y, Yang Y, Chen YC, Tung MC, Wu JL, Engelking MH, Leong JC (1995) Development of an in vitro subculture system for the oka organ (lymphoid tissue) of Penaeus monodon. Aquaculture 136:43-55
20. Jamet D, Boge G (1998) Characterisation of marine zooplankton alkaline phosphatase activity in relation to water quality. Hydrobiologia 373/374:311-316
21. Kanazawa A, Teshima S, Tokiwa S (1979a) Biosynthesis of fatty acids from palmitic acid in the prawn, Penaues japonicus. Mem Fac Fish Kagoshima Univ 28:17-20
22. Kanazawa A, Teshima S, Ono K (1979b) Relationship between essential fatty acid requirements of aquatic animals and the capacity for bioconversion of linolenic acid to highly unsaturated fatty acids. Comp Biochem Physiol 63B:295-298
23. Kimura H, Fukuba T, Naganuma T (1999) Biomass of thraustochytrid protoctists in coastal water. Mar Ecol Prog Ser 189:27-33
24. La Cono V, Urzì C (2003) Fluorescent in situ hybridization applied on samples taken with adhesive tape strips. J Microbiol Methods 55:65-71
25. Leander CA, Porter D (2001) The Labyrinthulomycota is comprised of three distinct lineages. Mycologia 93:459-464
26. Leander CL, Porter D, Leander BS (2004) Comparative morphology and molecular phylogeny of aplanochytrids (Labyrinthulomycota). Eur J Protistol 40:317-328
27. Lespilette M, Bogé G, Richard S, Jamet JL (2007) Origin and characteristics of the zooplankton phosphatase activity in a coastal ecosystem of the Mediterranean sea (Toulon Bay). Mar Environ Res 63:445-456
28. Lubzens E, Marko A, Tietz A (1985) De novo synthesis of fatty acids in the rotifer, Brachionus plicatilis. Aquaculture 47: 27-37
29. Lyons MM, Ward JE, Smolowitz R, Uhlinger KR, Gast RJ (2005) Lethal marine snow: pathogen of bivalve mollusc concealed in marine aggregates. Limnol Oceanogr 50: 1983-1988
30. Moter A, Göbel UB (2000) Fluorescence in situ hybridization (FISH) for direct visualization of microorganisms. J Microbiol Methods 41:85-112
31. Nichols PD, Nichols CAM (2008) Microbial signature lipid profiling and exopolysaccharides: experiences initiated with Professor David C White and transported to Tasmania, Australia. J Microbiol Methods 74:33-46
32. Perkins FO (1973) A new species of marine labyrinthulid Labyrinthuloides yorkensis gen. nov. spec. nov.-cytology and fine structure. Arch Mikrobiol 90:1-17
33. Porter D (1990) Phylum Labyrinthulomycota. In: Margulis L, Corliss JO, Melkonian M, Chapman DJ (eds) Handbook of Protoctista. Jones and Bartlett, Boston, p 388-398
34. Porter D, Lingle WL (1992) Endolithic thraustochytrid marine fungi from planted shell fragments. Mycologia 84:289-299
35. Raghukumar S (1985) Enumeration of thraustochytrids (heterotrophic microorganisms) from the Arabian Sea. Mahasagar Bull Natl Inst Oceanogr 18:457-465
36. Raghukumar S (1988) Detection of the thraustochytrid protist Ulkenia visurgensis in a hydroid, using immunofluorescence. Mar Biol 97:253-258
37. Raghukumar S (2002) Ecology of the marine protists, the Labyrinthulomycetes (Thraustochytrids and Labyrinthulids). Eur J Protistol 38:127-145
38. Raghukumar S (2008) Thraustochytrid marine protists: production of PUFAs and other emerging technologies. Mar Biotechnol 10:631-640
39. Raghukumar S, Raghukumar C (1999) Thraustochytrid fungoid protists in faecal pellets of the tunicate Pegea confoederata, their tolerance to deep-sea conditions and implication in degradation processes. Mar Ecol Prog Ser 190:133-140
40. Raghukumar S, Schaumann K (1993) An epifluorescence microscopy method for direct detection and enumeration of the fungi-like marine protists, the thraustochytrids. Limnol Oceanogr 38:182-187
41. Raghukumar S, Ramaiah N, Raghukumar C (2001) Dynamics of thraustochytrid protists in the water column of the Arabian Sea. Aquat Microb Ecol 24:175-186
42. Rinkevich B (1999) Cell cultures from marine invertebrates: obstacles, new approaches and recent improvements. J Biotechnol 70:133-153
43. Rinkevich B, Rabinowitz C (1993) In vitro culture of blood cells from the colonial protochordate Botryllus schlosseri. In Vitro Cell Dev Biol 29:79-85
44. Rinkevich B, Rabinowitz C (1997) Initiation of epithelial cell cultures from palleal buds of Botryllus schlosseri, a colonial tunicate. In Vitro Cell Dev Biol Anim 33:422-424
45. Sambrook J, Fritsch EF, Maniatis T (1989) Molecular cloning: a laboratory manual, 2nd edn. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
46. Smolina I, Lee C, Frank-Kamenetskii M (2007) Detection of low-copy-number genomic DNA sequences in individual bacterial cells by using peptide nucleic acid-assisted rolling-circle amplification and fluorescence in situ hybridization. Appl Environ Microbiol 73:2324-2328
47. Staley JT, Konopka A (1985) Measurements of in situ activities of nonphotosynthetic microorganisms in aquatic and terrestrial habitats. Annu Rev Microbiol 39:321-346
48. Takao Y, Tomaru Y, Nagasaki K, Sasakura Y, Yokoyama R, Honda D (2007) Fluorescence in situ hybridization using 18S rRNA targeted probe for specific detection of thraustochytrids (Labyrinthulomycetes). Plankton Benthos Res 2:91-97
49. Thimm T, Tebbe CC (2003) Protocol for rapid fluorescence in situ hybridization of bacteria in cryosections of microarthropods. Appl Environ Microbiol 69:2875-2878
50. White TJ, Bruns TD, Lee SB, Taylor JW (1990) Analysis of phylogenetic relationships by amplification and direct sequencing of ribosomal DNA genes. In: Innis DH, Sninsky JJ, White TJ (eds) PCR protocols: a guide to methods and applications. Academic Press, New York, p 315-322