-
1
-
-
34249279527
-
Stability and flexibility of epigenetic gene regulation in mammalian development.
-
10.1038/nature05918, 17522676
-
Reik W. Stability and flexibility of epigenetic gene regulation in mammalian development. Nature 2007, 447:425-432. 10.1038/nature05918, 17522676.
-
(2007)
Nature
, vol.447
, pp. 425-432
-
-
Reik, W.1
-
2
-
-
32344450824
-
Genomic DNA methylation: the mark and its mediators.
-
10.1016/j.tibs.2005.12.008, 16403636
-
Klose RJ, Bird AP. Genomic DNA methylation: the mark and its mediators. Trends Biochem Sci 2006, 31:89-97. 10.1016/j.tibs.2005.12.008, 16403636.
-
(2006)
Trends Biochem Sci
, vol.31
, pp. 89-97
-
-
Klose, R.J.1
Bird, A.P.2
-
3
-
-
15744401773
-
Eukaryotic cytosine methyltransferases.
-
10.1146/annurev.biochem.74.010904.153721, 15952895
-
Goll MG, Bestor TH. Eukaryotic cytosine methyltransferases. Annu Rev Biochem 2005, 74:481-514. 10.1146/annurev.biochem.74.010904.153721, 15952895.
-
(2005)
Annu Rev Biochem
, vol.74
, pp. 481-514
-
-
Goll, M.G.1
Bestor, T.H.2
-
4
-
-
0035093826
-
Evolution of imprinting mechanisms: the battle of the sexes begins in the zygote.
-
10.1038/85804, 11242103
-
Reik W, Walter J. Evolution of imprinting mechanisms: the battle of the sexes begins in the zygote. Nat Genet 2001, 27:255-256. 10.1038/85804, 11242103.
-
(2001)
Nat Genet
, vol.27
, pp. 255-256
-
-
Reik, W.1
Walter, J.2
-
5
-
-
19444361995
-
Genomic imprinting and methylation: epigenetic canalization and conflict.
-
10.1016/j.tig.2005.04.005, 15922835
-
Wilkins JF. Genomic imprinting and methylation: epigenetic canalization and conflict. Trends Genet 2005, 21:356-365. 10.1016/j.tig.2005.04.005, 15922835.
-
(2005)
Trends Genet
, vol.21
, pp. 356-365
-
-
Wilkins, J.F.1
-
6
-
-
2342481623
-
Recent advances in X-chromosome inactivation.
-
10.1016/j.ceb.2004.03.005, 15145348
-
Heard E. Recent advances in X-chromosome inactivation. Curr Opin Cell Biol 2004, 16:247-255. 10.1016/j.ceb.2004.03.005, 15145348.
-
(2004)
Curr Opin Cell Biol
, vol.16
, pp. 247-255
-
-
Heard, E.1
-
7
-
-
65349159326
-
X-chromosome inactivation: the molecular basis of silencing.
-
10.1186/jbiol95, 2776401, 18983701
-
Panning B. X-chromosome inactivation: the molecular basis of silencing. J Biol 2008, 7:30. 10.1186/jbiol95, 2776401, 18983701.
-
(2008)
J Biol
, vol.7
, pp. 30
-
-
Panning, B.1
-
8
-
-
46249117780
-
Genomic surveys by methylation-sensitive SNP analysis identify sequence-dependent allele-specific DNA methylation.
-
10.1038/ng.174, 18568024
-
Kerkel K, Spadola A, Yuan E, Kosek J, Jiang L, Hod E, Li K, Murty VV, Schupf N, Vilain E, Morris M, Haghighi F, Tycko B. Genomic surveys by methylation-sensitive SNP analysis identify sequence-dependent allele-specific DNA methylation. Nat Genet 2008, 40:904-908. 10.1038/ng.174, 18568024.
-
(2008)
Nat Genet
, vol.40
, pp. 904-908
-
-
Kerkel, K.1
Spadola, A.2
Yuan, E.3
Kosek, J.4
Jiang, L.5
Hod, E.6
Li, K.7
Murty, V.V.8
Schupf, N.9
Vilain, E.10
Morris, M.11
Haghighi, F.12
Tycko, B.13
-
9
-
-
50849141092
-
An Sp1/Sp3 binding polymorphism confers methylation protection.
-
10.1371/journal.pgen.1000162, 2515197, 18725933
-
Boumber YA, Kondo Y, Chen X, Shen L, Guo Y, Tellez C, Estecio MR, Ahmed S, Issa JP. An Sp1/Sp3 binding polymorphism confers methylation protection. PLoS Genet 2008, 4:e1000162. 10.1371/journal.pgen.1000162, 2515197, 18725933.
-
(2008)
PLoS Genet
, vol.4
-
-
Boumber, Y.A.1
Kondo, Y.2
Chen, X.3
Shen, L.4
Guo, Y.5
Tellez, C.6
Estecio, M.R.7
Ahmed, S.8
Issa, J.P.9
-
10
-
-
34250773900
-
Allelic 'choice' governs somatic hypermutation in vivo at the immunoglobulin kappa-chain locus.
-
10.1038/ni1476, 17546032
-
Fraenkel S, Mostoslavsky R, Novobrantseva TI, Pelanda R, Chaudhuri J, Esposito G, Jung S, Alt FW, Rajewsky K, Cedar H, Bergman Y. Allelic 'choice' governs somatic hypermutation in vivo at the immunoglobulin kappa-chain locus. Nat Immunol 2007, 8:715-722. 10.1038/ni1476, 17546032.
-
(2007)
Nat Immunol
, vol.8
, pp. 715-722
-
-
Fraenkel, S.1
Mostoslavsky, R.2
Novobrantseva, T.I.3
Pelanda, R.4
Chaudhuri, J.5
Esposito, G.6
Jung, S.7
Alt, F.W.8
Rajewsky, K.9
Cedar, H.10
Bergman, Y.11
-
11
-
-
0037454947
-
DNA methylation maintains allele-specific KIR gene expression in human natural killer cells.
-
10.1084/jem.20021127, 2193817, 12538663
-
Chan HW, Kurago ZB, Stewart CA, Wilson MJ, Martin MP, Mace BE, Carrington M, Trowsdale J, Lutz CT. DNA methylation maintains allele-specific KIR gene expression in human natural killer cells. J Exp Med 2003, 197:245-255. 10.1084/jem.20021127, 2193817, 12538663.
-
(2003)
J Exp Med
, vol.197
, pp. 245-255
-
-
Chan, H.W.1
Kurago, Z.B.2
Stewart, C.A.3
Wilson, M.J.4
Martin, M.P.5
Mace, B.E.6
Carrington, M.7
Trowsdale, J.8
Lutz, C.T.9
-
12
-
-
63449103531
-
DNA methylation analysis of chromosome 21 gene promoters at single base pair and single allele resolution.
-
10.1371/journal.pgen.1000438, 2653639, 19325872
-
Zhang Y, Rohde C, Tierling S, Jurkowski TP, Bock C, Santacruz D, Ragozin S, Reinhardt R, Groth M, Walter J, Jeltsch A. DNA methylation analysis of chromosome 21 gene promoters at single base pair and single allele resolution. PLOS Genet 2009, 5:e1000438. 10.1371/journal.pgen.1000438, 2653639, 19325872.
-
(2009)
PLOS Genet
, vol.5
-
-
Zhang, Y.1
Rohde, C.2
Tierling, S.3
Jurkowski, T.P.4
Bock, C.5
Santacruz, D.6
Ragozin, S.7
Reinhardt, R.8
Groth, M.9
Walter, J.10
Jeltsch, A.11
-
13
-
-
33646193822
-
Inherited epigenetic variation--revisiting soft inheritance.
-
10.1038/nrg1834, 16534512
-
Richards EJ. Inherited epigenetic variation--revisiting soft inheritance. Nat Rev Genet 2006, 7:395-401. 10.1038/nrg1834, 16534512.
-
(2006)
Nat Rev Genet
, vol.7
, pp. 395-401
-
-
Richards, E.J.1
-
14
-
-
33751505540
-
DNA methylation profiling of human chromosomes 6, 20 and 22.
-
10.1038/ng1909, 17072317
-
Eckhardt F, Lewin J, Cortese R, Rakyan VK, Attwood J, Burger M, Burton J, Cox TV, Davies R, Down TA, Haefliger C, Horton R, Howe K, Jackson DK, Kunde J, Koenig C, Liddle J, Niblett D, Otto T, Pettett R, Seemann S, Thompson C, West T, Rogers J, Olek A, Berlin K, Beck S. DNA methylation profiling of human chromosomes 6, 20 and 22. Nat Genet 2006, 38:1378-1385. 10.1038/ng1909, 17072317.
-
(2006)
Nat Genet
, vol.38
, pp. 1378-1385
-
-
Eckhardt, F.1
Lewin, J.2
Cortese, R.3
Rakyan, V.K.4
Attwood, J.5
Burger, M.6
Burton, J.7
Cox, T.V.8
Davies, R.9
Down, T.A.10
Haefliger, C.11
Horton, R.12
Howe, K.13
Jackson, D.K.14
Kunde, J.15
Koenig, C.16
Liddle, J.17
Niblett, D.18
Otto, T.19
Pettett, R.20
Seemann, S.21
Thompson, C.22
West, T.23
Rogers, J.24
Olek, A.25
Berlin, K.26
Beck, S.27
more..
-
15
-
-
36249017308
-
Widespread monoallelic expression on human autosomes.
-
10.1126/science.1148910, 18006746
-
Gimelbrant A, Hutchinson JN, Thompson BR, Chess A. Widespread monoallelic expression on human autosomes. Science 2007, 318:1136-1140. 10.1126/science.1148910, 18006746.
-
(2007)
Science
, vol.318
, pp. 1136-1140
-
-
Gimelbrant, A.1
Hutchinson, J.N.2
Thompson, B.R.3
Chess, A.4
-
16
-
-
40149090710
-
Differential allelic expression in the human genome: a robust approach to identify genetic and epigenetic cis-acting mechanisms regulating gene expression.
-
10.1371/journal.pgen.1000006, 2265535, 18454203
-
Serre D, Gurd S, Ge B, Sladek R, Sinnett D, Harmsen E, Bibikova M, Chudin E, Barker DL, Dickinson T, Fan JB, Hudson TJ. Differential allelic expression in the human genome: a robust approach to identify genetic and epigenetic cis-acting mechanisms regulating gene expression. PLoS Genet 2008, 4:e1000006. 10.1371/journal.pgen.1000006, 2265535, 18454203.
-
(2008)
PLoS Genet
, vol.4
-
-
Serre, D.1
Gurd, S.2
Ge, B.3
Sladek, R.4
Sinnett, D.5
Harmsen, E.6
Bibikova, M.7
Chudin, E.8
Barker, D.L.9
Dickinson, T.10
Fan, J.B.11
Hudson, T.J.12
-
17
-
-
61449111951
-
Allele-specific gene expression patterns in primary leukemic cells reveal regulation of gene expression by CpG site methylation.
-
10.1101/gr.083931.108, 2612957, 18997001
-
Milani L, Lundmark A, Nordlund J, Kiialainen A, Flaegstad T, Jonmundsson G, Kanerva J, Schmiegelow K, Gunderson KL, Lonnerholm G, Syvanen AC. Allele-specific gene expression patterns in primary leukemic cells reveal regulation of gene expression by CpG site methylation. Genome Res 2009, 19:1-11. 10.1101/gr.083931.108, 2612957, 18997001.
-
(2009)
Genome Res
, vol.19
, pp. 1-11
-
-
Milani, L.1
Lundmark, A.2
Nordlund, J.3
Kiialainen, A.4
Flaegstad, T.5
Jonmundsson, G.6
Kanerva, J.7
Schmiegelow, K.8
Gunderson, K.L.9
Lonnerholm, G.10
Syvanen, A.C.11
-
18
-
-
58349092614
-
Allele-specific gene expression is widespread across the genome and biological processes.
-
10.1371/journal.pone.0004150, 2613524, 19127300
-
Palacios R, Gazave E, Goni J, Piedrafita G, Fernando O, Navarro A, Villoslada P. Allele-specific gene expression is widespread across the genome and biological processes. PLoS ONE 2009, 4:e4150. 10.1371/journal.pone.0004150, 2613524, 19127300.
-
(2009)
PLoS ONE
, vol.4
-
-
Palacios, R.1
Gazave, E.2
Goni, J.3
Piedrafita, G.4
Fernando, O.5
Navarro, A.6
Villoslada, P.7
-
19
-
-
1042278765
-
The history of cancer epigenetics.
-
10.1038/nrc1279, 14732866
-
Feinberg AP, Tycko B. The history of cancer epigenetics. Nat Rev Cancer 2004, 4:143-153. 10.1038/nrc1279, 14732866.
-
(2004)
Nat Rev Cancer
, vol.4
, pp. 143-153
-
-
Feinberg, A.P.1
Tycko, B.2
-
20
-
-
34250662288
-
An epigenetic approach to cancer etiology.
-
10.1097/PPO.0b013e31803c6e3b, 17464249
-
Feinberg AP. An epigenetic approach to cancer etiology. Cancer J 2007, 13:70-74. 10.1097/PPO.0b013e31803c6e3b, 17464249.
-
(2007)
Cancer J
, vol.13
, pp. 70-74
-
-
Feinberg, A.P.1
-
21
-
-
0031736335
-
Monoallelic expression: 'there can only be one'.
-
10.1016/S0168-9525(98)01583-2, 9825668
-
Ohlsson R, Tycko B, Sapienza C. Monoallelic expression: 'there can only be one'. Trends Genet 1998, 14:435-438. 10.1016/S0168-9525(98)01583-2, 9825668.
-
(1998)
Trends Genet
, vol.14
, pp. 435-438
-
-
Ohlsson, R.1
Tycko, B.2
Sapienza, C.3
-
22
-
-
61449515589
-
DNA methylation analysis by bisulfite conversion, cloning, and sequencing of individual clones.
-
full_text, 18987815
-
Zhang Y, Rohde C, Tierling S, Stamerjohanns H, Reinhardt R, Walter J, Jeltsch A. DNA methylation analysis by bisulfite conversion, cloning, and sequencing of individual clones. Methods Mol Biol 2009, 507:177-187. full_text, 18987815.
-
(2009)
Methods Mol Biol
, vol.507
, pp. 177-187
-
-
Zhang, Y.1
Rohde, C.2
Tierling, S.3
Stamerjohanns, H.4
Reinhardt, R.5
Walter, J.6
Jeltsch, A.7
-
23
-
-
27744577751
-
BiQ Analyzer: visualization and quality control for DNA methylation data from bisulfite sequencing.
-
10.1093/bioinformatics/bti652, 16141249
-
Bock C, Reither S, Mikeska T, Paulsen M, Walter J, Lengauer T. BiQ Analyzer: visualization and quality control for DNA methylation data from bisulfite sequencing. Bioinformatics 2005, 21:4067-4068. 10.1093/bioinformatics/bti652, 16141249.
-
(2005)
Bioinformatics
, vol.21
, pp. 4067-4068
-
-
Bock, C.1
Reither, S.2
Mikeska, T.3
Paulsen, M.4
Walter, J.5
Lengauer, T.6
-
24
-
-
41149172342
-
Bisulfite sequencing Data Presentation and Compilation (BDPC) web server - a useful tool for DNA methylation analysis.
-
10.1093/nar/gkn083, 2275153, 18296484
-
Rohde C, Zhang Y, Jurkowski TP, Stamerjohanns H, Reinhardt R, Jeltsch A. Bisulfite sequencing Data Presentation and Compilation (BDPC) web server - a useful tool for DNA methylation analysis. Nucleic Acids Res 2008, 36:e34. 10.1093/nar/gkn083, 2275153, 18296484.
-
(2008)
Nucleic Acids Res
, vol.36
-
-
Rohde, C.1
Zhang, Y.2
Jurkowski, T.P.3
Stamerjohanns, H.4
Reinhardt, R.5
Jeltsch, A.6
-
25
-
-
76249114815
-
Database for Non-imprinted Allele-specific DNA Methylation on Human Autosomes.
-
Database for Non-imprinted Allele-specific DNA Methylation on Human Autosomes. , http://biochem.jacobs-university.de/ASM/
-
-
-
-
26
-
-
0031860393
-
Databases on transcriptional regulation: TRANSFAC, TRRD and COMPEL.
-
Heinemeyer T, Wingender E, Reuter I, Hermjakob H, Kel AE, Kel OV, Ignatieva EV, Ananko EA, Podkolodnaya OA, Kolpakov FA, Podkolodny NL, Kolchanov NA. Databases on transcriptional regulation: TRANSFAC, TRRD and COMPEL. Nucleic Acids Res 1998, 26:362-367.
-
(1998)
Nucleic Acids Res
, vol.26
, pp. 362-367
-
-
Heinemeyer, T.1
Wingender, E.2
Reuter, I.3
Hermjakob, H.4
Kel, A.E.5
Kel, O.V.6
Ignatieva, E.V.7
Ananko, E.A.8
Podkolodnaya, O.A.9
Kolpakov, F.A.10
Podkolodny, N.L.11
Kolchanov, N.A.12
|