Model calcium sensors for network homeostasis: Sensor and readout parameter analysis from a database of model neuronal networks

Journal of Neuroscience

Volumn 30, Issue 5, 2010, Pages 1686-1698

  Günay, Cengiz ^a   Prinz, Astrid A ^a  

^a EMORY UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CALCIUM ION;

ANIMAL CELL; ANTERIOR BURSTER CELL; ARTICLE; CALCIUM CELL LEVEL; CELL TYPE; GANGLION; HOMARUS AMERICANUS; HOMEOSTASIS; LOBSTER; MODEL; NERVE CELL; NERVE CELL NETWORK; NONHUMAN; PARAMETER; PREDICTION; PRIORITY JOURNAL; PYLORIC CONSTRICTOR CELL; PYLORUS; REGULATORY MECHANISM; SENSOR; SIGNAL TRANSDUCTION; TIME;

BIOSENSING TECHNIQUES; CALCIUM; CALCIUM SIGNALING; FEEDBACK, PHYSIOLOGICAL; HOMEOSTASIS; LINEAR MODELS; MODELS, NEUROLOGICAL; NEURAL NETWORKS (COMPUTER); NEURAL PATHWAYS; NONLINEAR DYNAMICS; PYLORUS; RECEPTORS, CALCIUM-SENSING; SYNAPSES;

EID: 76149091190     PISSN: 02706474     EISSN: 15292401     Source Type: Journal    
DOI: 10.1523/JNEUROSCI.3098-09.2010     Document Type: Article

References (74)

1. Abbott L, LeMasson G (1993) Analysis of neuron models with dynamically regulated conductances. Neural Comp 5:823-842.
2. Achard P, De Schutter E (2006) Complex parameter landscape for a complex neuron model. PLoS Comput Biol 2:e94.
3. Achard P, De Schutter E (2008) Calcium, synaptic plasticity and intrinsic homeostasis in purkinje neuron models. Front Comput Neurosci 2:8.
4. An WF, Bowlby MR, Betty M, Cao J, Ling HP, Mendoza G, Hinson JW, Mattsson KI, Strassle BW, Trimmer JS, Rhodes KJ (2000) Modulation of A-type potassium channels by a family of calcium sensors. Nature 403:553-556.
5. Baines RA, Uhler JP, Thompson A, Sweeney ST, Bate M (2001) Altered electrical properties in Drosophila neurons developing without synaptic transmission. J Neurosci 21:1523-1531.
6. 2+-dependent regulation in neuronal gene expression. Curr Opin Neurobiol 7:419-429.
7. Burgoyne RD (2004) The neuronal calcium-sensor proteins. Biochim Biophys Acta 1742:59-68.
8. Calin-Jageman RJ, Tunstall MJ, Mensh BD, Katz PS, Frost WN (2007) Parameter space analysis suggests multi-site plasticity contributes to motor pattern initiation in Tritonia. J Neurophysiol 98:2382-2398.
9. 2+-regulated transcriptional repressor. Nature 398:80-84.
10. Codd E (1970) A relational model of data for large shared data banks. Commun ACM 13:377-387.
11. De Schutter E, Bower JM (1994) An active membrane model of the cerebellar purkinje-cell. 1. Simulation of current clamps in slice. J Neurophysiol 71:375-400.
12. Felsen G, Mainen ZF (2008) Neural substrates of sensory-guided locomotor decisions in the rat superior colliculus. Neuron 60:137-148.
13. Foster WR, Ungar LH, Schwaber JS (1993) Significance of conductances in Hodgkin-Huxley models. J Neurophysiol 70:2502-2518.
14. Gallin WJ, Greenberg ME (1995) Calcium regulation of gene-expression in neurons: the mode of entry matters. Curr Opin Neurobiol 5:367-374.
15. Goldman MS, Golowasch J, Marder E, Abbott LF (2001) Global structure, robustness, and modulation of neuronal networks. J Neurosci 21:5229-5238.
16. Golowasch J, Abbott LF, Marder E (1999a) Activity-dependent regulation of potassium currents in an identified neuron of the stomatogastric ganglion of the crab Cancer borealis. J Neurosci 19:RC33(1-5).
17. Golowasch J, Casey M, Abbott LF, Marder E (1999b) Network stability from activity-dependent regulation of neuronal conductances. Neural Comput 11:1079-1096.
18. Golowasch J, Goldman MS, Abbott LF, Marder E (2002) Failure of averaging in the construction of a conductance-based neuron model. J Neurophysiol 87:1129-1131.
19. v1.2 encodes a transcription factor. Cell 127:591-606.
20. Guha R, Stanton DT, Jurs PC (2005) Interpreting computational neural network quantitative structure-activity relationship models: a detailed interpretation of the weights and biases. J Chem Inf Model 45:1109-1121.
21. Günay C, Prinz AA (2009) Finding sensors for homeostasis of biological neuronal networks using artificial neural networks. In: Proceedings of the 2009 International Joint Conference on Neural Networks (Kozma R, Venayagamoorthy GK, eds). New York: IEEE Publishing.
22. Günay C, Edgerton JR, Jaeger D (2008) Channel density distributions explain spiking variability in the globus pallidus: a combined physiology and computer simulation database approach. J Neurosci 28:7476-7491.
23. Günay C, Edgerton JR, Li S, Sangrey T, Prinz AA, Jaeger D (2009) Database analysis of simulated and recorded electrophysiological datasets with pandora's toolbox. Neuroinformatics 7:93-111.
24. Hodgkin AL, Huxley AF (1952) A quantitative description of membrane current and its application to conduction and excitation in nerve. J Physiol 117:500-544.
25. Huguenard JR, McCormick DA (1992) Simulation of the currents involved in rhythmic oscillations in thalamic relay neurons. J Neurophysiol 68:1373-1383.
26. Ibata K, Sun Q, Turrigiano GG (2008) Rapid synaptic scaling induced by changes in postsynaptic firing. Neuron 57:819-826.
27. Khorkova O, Golowasch J (2007) Neuromodulators, not activity, control coordinated expression of ionic currents. J Neurosci 27:8709-8718.
28. Lawrence S, Burns I, Back A, Tsoi A, Giles C (1998) Neural network classification and prior class probabilities. Neural Netw 1524:299-313.
29. LeMasson G, Marder E, Abbott LF (1993) Activity-dependent regulation of conductances in model neurons. Science 259:1915-1917.
30. Levenberg K (1944) A method for the solution of certain non-linear problems in least squares. Q Appl Math 2:164-168.
31. Linsdell P, Moody WJ (1995) Electrical-activity and calcium influx regulate ion-channel development in embryonic Xenopus skeletal muscle. J Neurosci 15:4507-4514.
32. Liu Z, Golowasch J, Marder E, Abbott LF (1998) A model neuron with activity-dependent conductances regulated by multiple calcium sensors. J Neurosci 18:2309-2320.
33. MacLean JN, Zhang Y, Johnson BR, Harris-Warrick RM (2003) Activity-independent homeostasis in rhythmically active neurons. Neuron 37: 109-120.
34. MacLean JN, Zhang Y, Goeritz ML, Casey R, Oliva R, Guckenheimer J, Harris-Warrick RM (2005) Activity-independent coregulation of I-A and I-h in rhythmically active neurons. J Neurophysiol 94:3601-3617.
35. Marder E, Bucher D (2001) Central pattern generators and the control of rhythmic movements. Curr Biol 11:R986-R996.
36. Marder E, Calabrese RL (1996) Principles of rhythmic motor pattern generation. Physiol Rev 76:687-717.
37. Marquardt D (1963) An algorithm for least-squares estimation of nonlinear parameters. SIAM J Appl Math 11:431-441.
38. 2+- dependent transcription. Curr Opin Neurobiol 11:312-319.
39. Mermelstein PG, Bito H, Deisseroth K, Tsien RW (2000) Critical dependence of cAMP response element-binding protein phosphorylation on L-type calcium channels supports a selective response to EPSPs in preference to action potentials. J Neurosci 20:266-273.
40. Murphy TH, Worley PF, Baraban JM (1991) L-type voltage-sensitive calcium channels mediate synaptic activation of immediate early genes. Neuron 7:625-635.
41. +-currents. Proc Natl Acad Sci U S A 98:12808-12813.
42. Nelson AB, Krispel CM, Sekirnjak C, du Lac S (2003) Long-lasting increases in intrinsic excitability triggered by inhibition. Neuron 40:609-620.
43. + channels. J Cell Sci 116:4833-4845.
44. Olypher AV, Calabrese RL (2007) Using constraints on neuronal activity to reveal compensatory changes in neuronal parameters. J Neurophysiol 98:3749-3758.
45. Olypher AV, Prinz AA (2010) Geometry and dynamics of activity-dependent homeostatic regulation in neurons. J Comp Neurosci, in press.
46. Poirazi P, Mel BW (2001) Impact of active dendrites and structural plasticity on the memory capacity of neural tissue. Neuron 29:779-796.
47. 2+ release in the presence of maurocalcine in skeletal muscle. Biophys J 91:2206-2215.
48. Prinz AA, Billimoria CP, Marder E (2003) Alternative to hand-tuning conductance-based models: construction and analysis of databases of model neurons. J Neurophysiol 90:3998-4015.
49. Prinz AA, Bucher D, Marder E (2004) Similar network activity from disparate circuit parameters. Nat Neurosci 7:1345-1352.
50. Rabinowitch I, Segev I (2006) The endurance and selectivity of spatial patterns of long-term potentiation/depression in dendrites under homeostatic synaptic plasticity. J Neurosci 26:13474-13484.
51. Reyes MB, Huerta R, Rabinovich MI, Selverston AI (2008) Artificial synaptic modification reveals a dynamical invariant in the pyloric CPG. Eur J Appl Physiol 102:667-675.
52. Rosenblatt F (1958) The perceptron, a probabilistic model of information storage and organization in the brain. Psychol Rev 65:386-408.
53. Ross WN (1989) Changes in intracellular calcium during neuron activity. Annu Rev Physiol 51:491-506.
54. Rumelhart DE, McClelland JL, eds (1986) Parallel distributed processing: explorations in the microstructure of cognition, Vol 1, Foundations. Cambridge, MA: Massachusetts Institute of Technology.
55. Rumelhart DE, Hinton GE, Williams RJ (1986) Learning representations by back-propagating errors. Nature 323:533-536.
56. Schulz DJ, Goaillard JM, Marder E (2006) Variable channel expression in identified single and electrically coupled neurons in different animals. Nat Neurosci 9:356-362.
57. Schulz DJ, Goaillard JM, Marder EE (2007) Quantitative expression profiling of identified neurons reveals cell-specific constraints on highly variable levels of gene expression. Proc Natl Acad SciU S A 104:13187-13191.
58. Siegel M, Marder E, Abbott LF (1994) Activity-dependent current distributions in model neurons. Proc Natl Acad Sci U S A 91:11308-11312.
59. Soto-Treviño C, Thoroughman KA, Marder E, Abbott LF (2001) Activity-dependent modification of inhibitory synapses in models of rhythmic neural networks. Nat Neurosci 4:297-303.
60. Stellwagen D, Malenka RC (2006) Synaptic scaling mediated by glial TNF-alpha. Nature 440:1054-1059.
61. 2+ channel. Cell 133: 1228-1240.
62. Taylor AL, Hickey TJ, Prinz AA, Marder E (2006) Structure and visualization of high-dimensional conductance spaces. J Neurophysiol 96:891-905.
63. Taylor AL, Goaillard JM, Marder E (2009) How multiple conductances determine electrophysiological properties in a multicompartment model. J Neurosci 29:5573-5586.
64. Thoby-Brisson M, Simmers J (1998) Neuromodulatory inputs maintain expression of a lobster motor pattern-generating network in a modulation-dependent state: evidence from long-term decentralization in vitro. J Neurosci 18:2212-2225.
65. Thoby-Brisson M, Simmers J (2000) Transition to endogenous bursting after long-term decentralization requires de novo transcription in a critical time window. J Neurophysiol 84:596-599.
66. Thoby-Brisson M, Simmers J (2002) Long-term neuromodulatory regulation of a motor pattern-generating network: maintenance of synaptic efficacy and oscillatory properties. J Neurophysiol 88:2942-2953.
67. Tierney AJ, Harris-Warrick RM (1992) Physiological-role of the transient potassium current in the pyloric circuit of the lobster stomatogastric ganglion. J Neurophysiol 67:599-609.
68. Turrigiano G, Abbott LF, Marder E (1994) Activity-dependent changes in the intrinsic-properties of cultured neurons. Science 264:974-977.
69. Turrigiano G, LeMasson G, Marder E (1995) Selective regulation of current densities underlies spontaneous changes in the activity of cultured neurons. J Neurosci 15:3640-3652.
70. Turrigiano GG, Leslie KR, Desai NS, Rutherford LC, Nelson SB (1998) Activity-dependent scaling of quantal amplitude in neocortical neurons. Nature 391:892-896.
71. Viana di Prisco G, Alford S (2004) Quantitative investigation of calcium signals for locomotor pattern generation in the lamprey spinal cord. J Neurophysiol 92:1796-1806.
72. A transmission is a critical step in the process of triggering homeostatic increases in quantal amplitude. Proc Natl Acad Sci U S A 105:11412-11417.
73. Zhang Y, MacLean JN, An WF, Lanning CC, Harris-Warrick RM (2003) KChIP1 and frequenin modify shal-evoked potassium currents in pyloric neurons in the lobster stomatogastric ganglion. J Neurophysiol 89:1902-1909.
74. Zhang Y, Khorkova O, Rodriguez R, Golowasch J, Golowaschi J (2009) Activity and neuromodulatory input contribute to the recovery of rhythmic output after decentralization in a central pattern generator. J Neurophysiol 101:372-386.