How multiple conductances determine electrophysiological properties in a multicompartment model

Journal of Neuroscience

Volumn 29, Issue 17, 2009, Pages 5573-5586

  Taylor, Adam L ^a   Goaillard, Jean Marc ^b   Marder, Eve ^a  

^a BRANDEIS UNIVERSITY   (United States)

^b INSERM   (France)

Author keywords

[No Author keywords available]

Indexed keywords

MESSENGER RNA; VOLTAGE GATED CALCIUM CHANNEL;

ARTICLE; CALCIUM CURRENT; COMPARTMENT MODEL; CONDUCTANCE; CORRELATION ANALYSIS; DECAPODA (CRUSTACEA); ELECTROPHYSIOLOGY; GANGLION; MEMBRANE POTENTIAL; NERVE CELL; NONHUMAN; NONLINEAR SYSTEM; PHENOTYPE; PRIORITY JOURNAL; PYLORUS; SPIKE WAVE;

ANIMALS; CRUSTACEA; ELECTROPHYSIOLOGICAL PHENOMENA; NEURAL CONDUCTION; NEURAL NETWORKS (COMPUTER); NEURONS; SYNAPTIC POTENTIALS;

EID: 65649117293     PISSN: 02706474     EISSN: 15292401     Source Type: Journal    
DOI: 10.1523/JNEUROSCI.4438-08.2009     Document Type: Article

References (66)

1. Abbott LF (1990) A network of oscillators. J Physics [A] 23:3835-3859.
2. Achard P, De Schutter E (2006) Complex parameter landscape for a complex neuron model. PLoS Comput Biol 2:e94. (Pubitemid 44147389)
3. + channel genes in the lobster pyloric central pattern generator. Ann N Y Acad Sci 860:281-295.
4. Baro DJ, Ayali A, French L, Scholz NL, Labenia J, Lanning CC, Graubard K, Harris-Warrick RM (2000) Molecular underpinnings of motor pattern generation: differential targeting of shal and shaker in the pyloric motor system. J Neurosci 20:6619-6630.
5. Brivanlou AH, Darnell JE Jr (2002) Signal transduction and the control of gene expression. Science 295:813-818.
6. Bucher D, Prinz AA, Marder E (2005) Animal-to-animal variability in motor pattern production in adults and during growth. J Neurosci 25:1611-1619. (Pubitemid 40282592)
7. Buchholtz F, Golowasch J, Epstein IR, Marder E (1992) Mathematical model of an identified stomatogastric ganglion neuron. J Neurophysiol 67:332-340.
8. Butera RJ Jr, Rinzel J, Smith JC (1999) Models of respiratory rhythm generation in the pre-Bötzinger complex. II. Populations of coupled pacemaker neurons. J Neurophysiol 82:398-415.
9. Carnevale NT, Hines ML (2005) The NEURON book. Cambridge, UK: Cambridge UP.
10. Connor JA, Walter D, McKown R (1977) Neural repetitive firing: modifications of the Hodgkin-Huxley axon suggested by experimental results from crustacean axons. Biophys J 18:81-102. (Pubitemid 8086377)
11. Draper NR, Smith H (1998) Applied regression analysis, Ed 3. New York: Wiley.
12. Eisen JS, Marder E (1982) Mechanisms underlying pattern generation in lobster stomatogastric ganglion as determined by selective inactivation of identified neurons. III. Synaptic connections of electrically coupled pyloric neurons. J Neurophysiol 48:1392-1415.
13. Fakler B, Adelman JP (2008) Control of K(Ca) channels by calcium nano/microdomains. Neuron 59:873-881.
14. Fan IQ, Chen B, Marsh JD (2000) Transcriptional regulation of L-type calcium channel expression in cardiac myocytes. J Mol Cell Cardiol 32:1841-1849.
15. Feng XJ (2005) Optimal identification, analysis, and control of complex bionetworks. PhD thesis, Princeton University.
16. Feng XJ, Rabitz H (2004) Optimal identification of biochemical reaction networks. Biophys J 86:1270-1281. (Pubitemid 38295569)
17. Feng XJ, Hooshangi S, Chen D, Li G, Weiss R, Rabitz H (2004) Optimizing genetic circuits by global sensitivity analysis. Biophys J 87:2195-2202. (Pubitemid 41071322)
18. Feng XJ, Rabitz H, Turinici G, Le Bris C (2006) A closed-loop identification protocol for nonlinear dynamical systems. J Phys Chem A 110:7755-7762. (Pubitemid 44124992)
19. Foster WR, Ungar LH, Schwaber JS (1993) Significance of conductances in Hodgkin-Huxley models. J Neurophysiol 70:2502-2518. (Pubitemid 24006842)
20. French LB, Lanning CC, Matly M, Harris-Warrick RM (2004) Cellular localization of shab and shaw potassium channels in the lobster stomatogastric ganglion. Neuroscience 123:919-930.
21. Goaillard JM, Schulz DJ, Kilman VL, Marder E (2004) Octopamine modulates the axons of modulatory projection neurons. J Neurosci 24:7063-7073. (Pubitemid 39096372)
22. Goldman MS, Golowasch J, Marder E, Abbott LF (2001) Global structure, robustness, and modulation of neuronal models. J Neurosci 21:5229-5238. (Pubitemid 32622948)
23. Golowasch J, Marder E (1992a) Ionic currents of the lateral pyloric neuron of the stomatogastric ganglion of the crab. J Neurophysiol 67:318-331.
24. 2+. J Neurosci 12:810-817.
25. Golowasch J, Goldman MS, Abbott LF, Marder E (2002) Failure of averaging in the construction of a conductance-based neuron model. J Neurophysiol 87:1129-1131. (Pubitemid 34670875)
26. Gunay C, Edgerton JR, Jaeger D (2008) Channel density distributions explain spiking variability in the globus pallidus: a combined physiology and computer simulation database approach. J Neurosci 28:7476-7491.
27. to,s: early afterdepolarizations, atrioventricular block, and ventricular arrhythmias in mice lacking Kv1.4 and expressing a dominant-negative Kv4 alpha subunit. Circ Res 87:73-79.
28. Harris-Warrick RM, Marder E, Selverston AI, Moulins M (1992) Dynamic biological networks: the stomatogastric nervous system. Cambridge, MA: MIT.
29. Hartline DK, Gassie DV Jr (1979) Pattern generation in the lobster (Panulirus) stomatogastric ganglion. I. Pyloric neuron kinetics and synaptic interactions. Biol Cybern 33:209-222.
30. Hartline DK, Graubard K (1992) Cellular and synaptic properties in the crustacean stomatogastric nervous system. In: Dynamic biological networks: the stomatogastric nervous system (Harris-Warrick RM, Marder E, Selverston AI, Moulins M, eds), pp 31-86. Cambridge, MA: MIT.
31. Hastie T, Tibshirani R, Friedman J (2001) The elements of statistical learning. New York: Springer.
32. Hill AA, Lu J, Masino MA, Olsen OH, Calabrese RL (2001) A model of a segmental oscillator in the leech heartbeat neuronal network. J Comput Neurosci 10:281-302. (Pubitemid 32725126)
33. Hill AA, Masino MA, Calabrese RL (2002) Model of intersegmental coordination in the leech heartbeat neuronal network. J Neurophysiol 87:1586-1602. (Pubitemid 34685495)
34. Hille B (2001) Ion channels of excitable membranes, Ed 3. Sunderland, MA: Sinauer.
35. Hobbs KH, Hooper SL (2008) Using complicated, wide dynamic range driving to develop models of single neurons in single recording sessions. J Neurophysiol 99:1871-1883.
36. Jezzini SH, Hill AA, Kuzyk P, Calabrese RL (2004) Detailed model of intersegmental coordination in the timing network of the leech heartbeat central pattern generator. J Neurophysiol 91:958-977. (Pubitemid 38173045)
37. Keim D (2000) An introduction to information visualization techniques for exploring large databases (tutorial). Paper presented at the IEEE Visualization Conference, Salt Lake City, UT, October.
38. Khaliq ZM, Gouwens NW, Raman IM (2003) The contribution of resurgent sodium current to high-frequency firing in Purkinje neurons: an experimental and modeling study. J Neurosci 23:4899-4912. (Pubitemid 36793216)
39. Latchman DS (1997) Transcription factors: an overview. Int J Biochem Cell Biol 29:1305-1312. (Pubitemid 28153484)
40. MacLean JN, Zhang Y, Johnson BR, Harris-Warrick RM (2003) Activity-independent homeostasis in rhythmically active neurons. Neuron 37:109-120. (Pubitemid 36106438)
41. h in rhythmically active neurons. J Neurophysiol 94:3601-3617.
42. Marder E (1984) Roles for electrical coupling in neural circuits as revealed by selective neuronal deletions. J Exp Biol 112:147-167. (Pubitemid 15217372)
43. Marder E (1998) From biophysics to models of network function. Annu Rev Neurosci 21:25-45. (Pubitemid 28150657)
44. Marder E, Eisen JS (1984) Transmitter identification of pyloric neurons: electrically coupled neurons use different neurotransmitters. J Neurophysiol 51:1345-1361. (Pubitemid 14076776)
45. 2+ channels in hippocampal neurons. Nature 395:900-905.
46. Nowotny T, Levi R, Selverston AI (2008) Probing the dynamics of identified neurons with a data-driven modeling approach. PLoS ONE 3:e2627.
47. Olypher AV, Calabrese RL (2007) Using constraints on neuronal activity to reveal compensatory changes in neuronal parameters. J Neurophysiol 98:3749-3758.
48. Prinz AA, Billimoria CP, Marder E (2003) Alternative to hand-tuning conductance-based models: construction and analysis of databases of model neurons. J Neurophysiol 90:3998-4015. (Pubitemid 37541930)
49. Prinz AA, Abbott LF, Marder E (2004a) The dynamic clamp comes of age. Trends Neurosci 27:218-224. (Pubitemid 38376409)
50. Prinz AA, Bucher D, Marder E (2004b) Similar network activity from disparate circuit parameters. Nat Neurosci 7:1345-1352. (Pubitemid 41057757)
51. Rabitz H, Alis O (1999) General foundations of high-dimensional model representations. J Math Chem 197-233.
52. Raman IM, Sprunger LK, Meisler MH, Bean BP (1997) Altered subthreshold sodium currents and disrupted firing patterns in Purkinje neurons of Scn8a mutant mice. Neuron 19:881-891. (Pubitemid 27471392)
53. Rosati B, McKinnon D (2004) Regulation of ion channel expression. Circ Res 94:874-883. (Pubitemid 38490064)
54. Schulz DJ, Goaillard JM, Marder E (2006) Variable channel expression in identified single and electrically coupled neurons in different animals. Nat Neurosci 9:356-362. (Pubitemid 43290965)
55. Schulz DJ, Goaillard JM, Marder EE (2007) Quantitative expression profiling of identified neurons reveals cell-specific constraints on highly variable levels of gene expression. Proc Natl Acad Sci U S A 104:13187-13191.
56. Soto-Trevino C, Rabbah P, Marder E, Nadim F (2005) Computational model of electrically coupled, intrinsically distinct pacemaker neurons. J Neurophysiol 94:590-604. (Pubitemid 40931948)
57. Swensen AM, Bean BP (2005) Robustness of burst firing in dissociated Purkinje neurons with acute or long-term reductions in sodium conductance. J Neurosci 25:3509-3520. (Pubitemid 40503677)
58. Swensen AM, Marder E (2000) Multiple peptides converge to activate the same voltage-dependent current in a central pattern-generating circuit. J Neurosci 20:6752-6759.
59. Taylor AL, Hickey TJ, Prinz AA, Marder E (2006) Structure and visualization of high-dimensional conductance spaces. J Neurophysiol 96:891-905. (Pubitemid 44155224)
60. Tobin AE, Van Hooser SD, Calabrese RL (2006) Creation and reduction of a morphologically detailed model of a leech heart interneuron. J Neurophysiol 96:2107-2120. (Pubitemid 44529664)
61. Turrigiano GG, LeMasson G, Marder E (1995) Selective regulation of current densities underlies spontaneous changes in the activity of cultured neurons. J Neurosci 15:3640-3652.
62. Ward MO, LeBlanc J, Tipnis R (1994) N-Land: a graphical tool for exploring n-dimensional data. Paper presented at the CG International Conference, Melbourne, Australia, June.
63. Weaver CM, Wearne SL (2008) Neuronal firing sensitivity to morphologic and active membrane parameters. PLoS Comput Biol 4:e11.
64. Xu M, Welling A, Paparisto S, Hofmann F, Klugbauer N (2003) Enhanced expression of L-type Cav1.3 calcium channels in murine embryonic hearts from Cav1.2-deficient mice. J Biol Chem 278:40837-40841. (Pubitemid 37280901)
65. 1D) calcium channel in sinoatrial nodes: insight gained using gene-targeted null mutant mice. Circ Res 90:981-987.
66. K,slow2, in Kv1DN mice is abolished by crossbreeding with Kv2DN mice. Am J Physiol Heart Circ Physiol 284:H491-H500.